HHsearch 1.5 NAME c3zey9_ FAM FILE c3zey9_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3zey9_.a3m DATE Sat Feb 16 08:32:03 2013 LENG 65 match states, 65 columns in multiple alignment FILT 22 out of 26 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.5 EVD 0.4374 1.3826 SEQ >ss_dssp CCCCCCCCCCCSCCCSBCCCTTTTTTCSCCBSSCBCSSCTTGGGCBCEEETTEEECTTTCCEEEC >sa_dssp EEEEEEEEEEEEEDEDEDEEEEBEEEEEEDCDCDDBDEBEDDEECBADCEEDDBCAEECECEDEE >ss_pred CCCCCCCEEEEEEEEEEEECCCCCCCCEEEEHHHHCCCCCCCCCEEEECCCCCCEECCCEEEEEC >ss_conf 97531001357666778863777632102012541899876642697214474220232111359 >Consensus xxxhxhxxxkLavLxyYkVdxngxxxgKVxrlrxeCpxxxCgxGxfMAxHxDRxyCGKCxltyxx >c3zey9_ KPIHRHKLEKMRALKYFKVTENDDGSFKVERTRDECPNPNCGAGVFMAQHKGRKYCGKCHLTYTM >UniRef50_P05759(24-74:76) 40S ribosomal protein S31 n=14 Tax=Eukaryota RepID=RS37_YEAST E=7e-09 s/c=1.21 id=56% cov=80% ----------LAVLSYYKV----DAEGKVTKLRRECSNPTCGAGVFLANHKDRLYCGKCHSVYKV >UniRef50_UPI00006CAF49(88-143:189) Ribosomal protein S27a containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CAF49 E=2e-14 s/c=1.44 id=52% cov=83% ---HRHVHTKLGALAFYKLENNG----KVSLQQKGCP--KCGPGIFMAKHYDRHYCGKCHLT--- >UniRef50_A0PDJ3(293-324:630) Polyprotein (Fragment) n=8 Tax=Bovine viral diarrhea virus 1 RepID=A0PDJ3_BVDV E=1e-05 s/c=1.59 id=48% cov=51% -------------------SETQQENGKISRLRRECPSDECGAGVFMASHF-------------- >UniRef50_UPI0000DC1016(90-137:145) UPI0000DC1016 related cluster n=1 Tax=Rattus norvegicus RepID=UPI0000DC1016 E=0.0001 s/c=0.99 id=35% cov=75% ---NKHEKVKLAVLKYYEVDKNGKIKNVLLM------------NVVMGSHFDRHYYGKCCPTY-- >UniRef50_Q6A1P6(93-148:177) Putative uncharacterized protein n=1 Tax=Euplotes vannus RepID=Q6A1P6_EUPVA E=7e-11 s/c=1.22 id=45% cov=86% ---HKHENIKMRVLSYFEVDKNG----KIEKLKQESPEQ---AGCYLADHKDRMHCGKTgYMFYKM >UniRef50_A8BNY1(85-134:137) Putative uncharacterized protein n=2 Tax=Giardia intestinalis RepID=A8BNY1_GIALA E=5e-09 s/c=1.25 id=40% cov=77% ---HEPKKVRLACLKYYTIKGDTA-----EPTREYCPN--CGPGIRIARHADRCHCGRC------ >UniRef50_Q98S99(68-112:115) 40S ribosomal protein S27A n=1 Tax=Guillardia theta RepID=Q98S99_GUITH E=8e-08 s/c=1.29 id=41% cov=71% ----------LRVLSYYHLDQN-----KITRILKESPD---SPGCFMANHFNRITCGKTGLTF-- >UniRef50_Q9FWV0(101-147:147) Putative uncharacterized protein n=2 Tax=Oryza sativa RepID=Q9FWV0_ORYSJ E=9e-08 s/c=1.23 id=43% cov=72% ---HEHRKEELAVLRHYRVD---DVMGKVERLRLMCPNPECkDVGALMAKHHD------------- >UniRef50_D1HQI3(77-108:113) Whole genome shotgun sequence of line PN40024, scaffold_144.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1HQI3_VITVI E=1e-05 s/c=1.59 id=44% cov=49% --------------------------------RRDCLDSECCVGTFMASHLDRHYYAKCSLAY-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 0 * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 P 2 * * * * * * * * * * * * 0 * * * * * * * 2 0 * * * * * * 1000 0 0 I 3 * * * * * * * 0 * * * * * * * * * * * * 3 0 * * * * * * 1000 0 0 H 4 * * * * * * 237 * * * * 2724 * * * * * * * * 4 0 * * * * * * 2459 0 0 R 5 * * * 1536 * * * * 1669 * * * * * 1553 * * * * * 5 0 * * * * * * 2459 0 0 H 6 * * * * * * 269 * * * * * 2558 * * * * * * * 6 0 * * * * * * 2459 0 0 K 7 * * * 1669 * * * * 1533 * * * * * 2516 * * 2597 * * 7 0 * * * * * * 2459 0 0 L 8 * * * * * * 2597 * 1011 2509 * 2617 * * * * * * * * 8 0 * * * * * * 2459 0 0 E 9 * * * 1512 * * * 2617 * * * * * * * * 2597 1638 * * 9 0 * * * * * * 2459 0 0 K 10 * * * 2516 * * * * 610 * * * * * 2558 * * * * * 10 0 * * * * * * 2459 0 0 M 11 * * * * * * * * * 255 2627 * * * * * * * * * 11 0 * * * * * * 2597 0 0 R 12 534 * * * * 3762 * * * * * * * * 2084 * * * * * 12 0 * * * * * * 2597 0 0 A 13 2651 2587 * * * * * * * * * * * * * * 4551 663 * * 13 0 * * * * * * 2597 0 0 L 14 * * * * * * * * * 0 * * * * * * * * * * 14 0 * * * * * * 2630 0 0 K 15 3818 * * * * * * * 1135 * * 4256 * 4414 3053 2454 3807 * * * 15 0 * * * * * * 2630 0 0 Y 16 * * * * 1981 * 2944 * * * * * * * * * * * * 697 16 0 * * * * * * 2703 0 0 F 17 * * * * 2841 * * * * * * * * * * * * * * 217 17 0 * * * * * * 2703 0 0 K 18 * * * 2613 * * 4086 * 972 * * 3850 * * 4044 4221 3568 * * * 18 0 * * * * * * 2703 0 0 V 19 * * * * * * * 2919 * 3048 * * * * * * * 421 * * 19 70 * 4391 * * * * 2703 0 0 T 20 * * 757 4008 * 4210 * * 3634 * * * * * * 4066 2719 * * * 20 226 * 2788 * * * 0 3001 0 1000 E 21 * * 2936 1703 * 2333 * * 2403 * * 3894 * 3888 * 4652 * * * * 21 95 * 3978 * * * 0 2616 0 1614 N 22 * * 2133 * * * * * * * * 613 * * * 4278 3909 * * * 22 228 * 2771 * * * 0 2574 0 1827 D 23 * * 3197 * * 473 * * * * * * * 3973 * * 3226 * * * 23 1353 * 717 * * 1502 628 2392 0 2128 D 24 2508 * 1050 * * * * * 2678 * * * * 2433 * * * * * * 24 279 * 2508 * * 2818 221 2391 0 2255 G 25 2832 * * 2370 * 2579 * 2541 * * * * * * * 2632 * 2594 * * 25 0 * * * * * 0 2255 0 2350 S 26 2632 * * 2832 * * * * 2541 * 2594 2370 * * * 2579 * * * * 26 0 * * * * 3397 144 2255 0 2350 F 27 * * * * 2756 529 * * * * * 2652 * * * * * * * * 27 0 * * * * 200 2952 2437 0 2334 K 28 * * * * * * * * 155 * * * * * * * * 3296 * * 28 0 * * * * * 0 2846 0 1000 V 29 * * * * * * * 1510 * 3226 * * * * * * * 884 * * 29 0 * * * * 0 * 2947 0 1000 E 30 * * * 1491 4285 * 4148 * 4541 3294 * * * 4683 * 2804 2656 4299 * * 30 0 * * * * * * 3100 0 0 R 31 * * * * * * * * 2832 4187 3294 * 3206 * 751 * * * * * 31 155 * 3294 * * * * 3100 0 0 T 32 * * * * * * * 4321 * 536 * * * 3371 * * 2612 * * * 32 0 * * * * * 0 2877 0 1000 R 33 * * * * * * * * 3012 3115 * * * 4202 502 * * * * * 33 0 * * * * * 0 2722 0 1000 D 34 * * 4393 3362 * * * * 1574 4362 * * * 3779 1330 * * * * * 34 0 * * * * * 0 2681 0 1000 E 35 * 3916 2935 828 * 3787 * * * * 4362 * * 4259 * * * * * 3917 35 0 * * * * * 0 2681 0 1000 C 36 * 280 * * * * * * * * * * * * * 2504 * * * * 36 0 * * * * * 0 2681 0 1000 P 37 3916 * 4259 4470 * * * * * 3756 * * 811 4435 * 4831 3169 * * * 37 61 * 4595 * * * 0 2681 0 1000 N 38 * * 2943 3736 * 3089 * * * * * 1079 * 3305 * 3281 * * * * 38 475 * 1834 * * * 0 2674 0 1368 P 39 3397 * 3257 2115 * * * * 3374 * * * 1806 3156 * 3737 * * * * 39 172 * 3156 * * 2688 243 2686 0 2311 N 40 * * * 1722 * * * * 2192 * * 2735 * 3651 * 2754 3321 * * * 40 0 * * * * 1671 544 2569 0 2395 C 41 * 0 * * * * * * * * * * * * * * * * * * 41 120 3652 * 0 * 786 1251 2752 1000 2141 G 42 4082 2458 4278 * * 769 * * * * * * * * * 3054 * * * * 42 0 * * * * 879 1132 2576 0 1353 A 43 1323 * * * * 4435 * * 4470 * * * 1925 * 4139 * * 2404 * * 43 0 * * * * 0 * 2681 0 1000 G 44 4087 * * * * 172 * * * * * 4224 * * * * * * * * 44 0 * * * * * * 2714 0 0 V 45 4402 2159 * * * * * 3260 * * * * * * * 4316 2562 1305 * * 45 0 * * * * * * 2714 0 0 F 46 * * * * 593 * * * * 3354 * * * * 3950 * * 3279 * 3809 46 0 * * * * * * 2714 0 0 M 47 * * * * * * * 3950 * 2611 374 * * * * * * * * * 47 0 * * * * * * 2714 0 0 A 48 79 * * * * 4224 * * * * * * * * * * * * * * 48 0 * * * * * * 2714 0 0 Q 49 4180 * 3809 4316 * * * * 2938 * * 3146 * 2743 3950 1934 4336 4198 * * 49 0 * * * * * * 2714 0 0 H 50 * * * * * * 81 * * * 4198 * * * * * * * * * 50 0 * * * * * * 2714 0 0 K 51 3194 * * 3265 1846 * 4402 * 1982 3988 * 4180 * * * 4316 * * * 4656 51 0 * * * * * * 2714 0 0 G 52 * * 319 * * 4457 * * * * * 2709 * * * * * * * * 52 66 4476 * 0 * * * 2775 1000 0 R 53 * * * * * * * * * * * * * * 0 * * * * * 53 0 * * * * * * 2716 0 0 K 54 * 4025 4203 4919 * * 1260 4341 4443 2359 3540 * * * * * 4117 * * * 54 0 * * * * * * 2716 0 0 Y 55 * * * * * * 2762 * * * * * * * * * 2674 * * 523 55 0 * * * * * * 2716 0 0 C 56 * 206 * * * * * * * * * * * * * * * * * 2909 56 0 * * * * * * 2716 0 0 G 57 3740 * * * * 191 * * * * * * * * * 4344 * * * * 57 0 * * * * * * 2716 0 0 K 58 * * * * * * * * 447 * * 4534 * * 2163 * * * * * 58 0 * * * * * * 2716 0 0 C 59 * 297 * * * * * * * * * * * * * * 2427 * * * 59 139 3449 * 0 * * * 2716 1000 0 H 60 * 3459 * * * 2553 1090 * * * * * * 4033 * 3707 4837 * * 3375 60 0 * * * * * * 2645 0 0 L 61 * * 4124 * * * * * * 593 3299 * 3924 * * 3158 * * * * 61 0 * * * * * * 2602 0 0 T 62 3597 * * * 3299 * * * * * * * * * * * 391 4231 * * 62 0 * * * * * * 2602 0 0 Y 63 * * * * 3121 * * * * * * * * * * * * * * 176 63 0 * * * * * * 2297 0 0 T 64 * * * * * * * * 649 * * * * * * * 1465 * * * 64 0 * * * * * * 1591 0 0 M 65 * * * * * * * * * * 559 * * * * * * 1638 * * 65 0 * * 0 * * * 1591 0 0 //