HHsearch 1.5 NAME c3zey8_ FAM FILE c3zey8_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3zey8_.a3m DATE Sat Feb 16 08:34:32 2013 LENG 42 match states, 42 columns in multiple alignment FILT 34 out of 38 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.6 EVD 0.4505 2.0609 SEQ >ss_dssp CCSSCCTTTTSCSSSEECCTTCCEEHHHHHHHHHHHTCCCCC >sa_dssp EEEEDEAEECEDDEDBDEEEEDCBBEDCCEECCEEDEEEEEE >ss_pred CCCCCEEEECCCCCCEEEHHHHHHHHHHHHHHHHHCCHHCCC >ss_conf 976411013016686220122278899999676410811029 >Consensus GkgsRxCrxCgxxxglIrkYglxlCRqCFRExAxdiGFxKyr >c3zey8_ GKGSRHCVICSNQKAVIRKYELNVCRQCFRENAANIGFSKLR >UniRef50_A2DYA8(16-56:57) 40S ribosomal protein S29, putative n=1 Tax=Trichomonas vaginalis RepID=A2DYA8_TRIVA E=2e-06 s/c=1.31 id=50% cov=100% GSVERSCRICGKRRGVIRQYRLNICRRCFRERAELLGFKKY- >UniRef50_P58731(13-54:54) 30S ribosomal protein S14P n=10 Tax=root RepID=RS14_AERPE E=3e-06 s/c=1.27 id=51% cov=102% GRGAQRCQRCGTRDAVIQKYGLYLCRQCFREIAPTLGFRKNR >UniRef50_B8N234(15-56:171) 40S ribosomal protein S29, putative n=1 Tax=Aspergillus flavus NRRL3357 RepID=B8N234_ASPFN E=5e-11 s/c=1.63 id=56% cov=102% GKGSRGCRVCTHRAGLIRKYGMNICRQCFREKSQDIGFHKVR >UniRef50_UPI0001C41CC2(9-49:50) ribosomal protein S14P Rps14p n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41CC2 E=7e-08 s/c=1.43 id=50% cov=100% GKASKKCSRCGDHSAIVSRYGLNLCRQCFREIAPKIGFKKY- >UniRef50_B9ZHX2(27-64:65) Ribosomal protein S14 n=2 Tax=Halobacteriaceae RepID=B9ZHX2_NATMA E=8e-08 s/c=1.53 id=36% cov=93% ---QRVCRDTGREQGLIGTYDIWLCRQSFREMARDMGFRKY- >UniRef50_Q8SS73(16-54:55) 40S ribosomal protein S29 n=1 Tax=Encephalitozoon cuniculi RepID=RS29_ENCCU E=1e-05 s/c=1.29 id=55% cov=95% GKGSRSCVSCYTFRGIIRK--LMMCRRCFREYAGDIGFAIY- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 2457 0 0 K 2 4694 * * * * * * * 701 * * * 3704 5075 2782 4058 * * * 4861 2 0 * * * * * * 2457 0 0 G 3 3140 * * * * 275 * * * * * * * * * * * 4058 * * 3 0 * * * * * * 2457 0 0 S 4 1805 * * 4141 * * * 4915 * * * * * 3383 * 921 * * * * 4 0 * * * * * * 2541 0 0 R 5 * * * * * * * * 3898 * * 3590 * 4618 306 * * * * * 5 0 * * * * * * 2663 0 0 H 6 * * * 2686 * 4106 4733 * 3471 * * * 5159 2669 2276 2859 * 3247 * 5383 6 0 * * * * * * 2659 0 0 C 7 * 60 * * * * * * * * * * * * * 4615 * * * * 7 0 * * * * * * 2675 0 0 V 8 * * * 4224 * * * * 5334 * 4237 * * 3404 711 4417 4941 3571 * * 8 0 * * * * * * 2584 0 0 I 9 5675 * 3883 * * * * 2745 * * * * * * 1455 4362 * 1514 * * 9 0 * * * * * * 2584 0 0 C 10 * 207 * * * * * * * * * * * * * * 2904 * * * 10 0 * * * * * * 2584 0 0 S 11 2846 * * 4615 * 636 * * * * * * * * * 3331 5116 * * 4362 11 0 * * * * * * 2584 0 0 N 12 * * 3655 * * 5499 3172 * 4671 * * 1854 * 4237 1666 5450 3630 * * * 12 0 * * * * * * 2584 0 0 Q 13 * * * 4036 4362 * 2784 * 2910 * 3924 5587 6286 3377 2250 4996 * 5740 * 2678 13 0 * * * * * * 2584 0 0 K 14 3439 * 3545 * * 2861 2965 * 4815 * * 4330 * 2672 2981 3265 5450 * 4042 * 14 127 3564 * 739 1319 * * 2584 1342 0 A 15 2412 * * * * 495 * * * * * * 4237 * * 4330 * * * * 15 0 * * * * * * 2584 0 0 V 16 * * * * * * * 2059 * 809 4941 * * * * * * 2674 * * 16 0 * * * * * * 2584 0 0 I 17 * * * * * * * 353 * * * * * * * * * 2580 * 4330 17 0 * * * * * * 2584 0 0 R 18 * * * * * 2920 * * * * * * * 4958 360 4142 * * * * 18 0 * * * * * * 2584 0 0 K 19 * * * * * * * 4237 480 * 5553 * * 4671 2912 * 4779 * * * 19 72 * 4362 * * * * 2584 0 0 Y 20 * * * * * * 4201 * * * * * * * * * * * * 81 20 0 * * * * * 0 2534 0 1000 E 21 * * 2862 4686 * 478 * * * * * 3953 * * 4613 * * * * * 21 0 * * * * 0 * 2534 0 1000 L 22 * * * * * * * 2057 * 498 4270 * * * * * * * * * 22 0 * * * * * * 2584 0 0 N 23 * * 4470 * 4330 * * * * 4631 2569 1409 * * * 4128 * * 3438 2556 23 0 * * * * * * 2584 0 0 V 24 * 4502 * * * * * 1788 * 1137 2880 * * * * * * 3720 * * 24 0 * * * * * * 2584 0 0 C 25 * 98 * * * * * * 3924 * * * * * * * * * * * 25 0 * * * * * * 2584 0 0 R 26 * * * * * * * * 4224 * * * * * 79 * * * * * 26 0 * * * * * * 2584 0 0 Q 27 * * 4224 * * * 3683 * * * * * * 539 2469 * * * * * 27 0 * * * * * * 2584 0 0 C 28 * 203 * * * * * * * * * * * * * 3903 * 3950 * * 28 0 * * * * * * 2590 0 0 F 29 * * * * 0 * * * * * * * * * * * * * * * 29 0 * * * * * * 2590 0 0 R 30 * * * * * * * * 3301 * * * * * 154 * * * * * 30 0 * * * * * * 2590 0 0 E 31 * * * 117 * * * * * * * * * 4531 * 4864 * * * * 31 0 * * * * * * 2590 0 0 N 32 * * 4864 * * * * 2494 2741 5456 3903 3561 * 5466 3275 * * 2605 * 2524 32 0 * * * * * * 2590 0 0 A 33 155 * * * * * * * * * * * * * * 3297 * * * * 33 0 * * * * * * 2590 0 0 A 34 4136 * * 4694 * 3361 3380 * 3075 3950 * 4374 2597 3281 2702 4116 * * * * 34 0 * * * * * * 2590 0 0 N 35 * * 795 3453 * * * * 2325 4694 * 4060 * * * * 4867 * * * 35 0 * * * * * * 2590 0 0 I 36 * * * * * * * 945 * 1942 2182 * * * * * * * * * 36 0 * * * * * * 2590 0 0 G 37 * * * * * 0 * * * * * * * * * * * * * * 37 0 * * * * * * 2590 0 0 F 38 * * * * 96 * * * * * * * * * * * * * 3950 * 38 0 * * * * * * 2590 0 0 S 39 4379 * 5350 3486 4260 * 5008 3742 1462 * * 5149 * 4647 3402 4818 * 3418 * 5291 39 0 * * * * * * 2590 0 0 K 40 * * * * * * * 4379 71 * * * * * * * * * * * 40 0 * * * * * * 2590 0 0 L 41 * * * * 5003 * * * * 2054 * 3853 * * * * * 3966 * 750 41 0 * * * * * * 2528 0 0 R 42 * * * * * * * * * * * * * * 0 * * * * * 42 0 * * 0 * * * 2000 0 0 //