HHsearch 1.5
NAME  c3vgyD_
FAM   
FILE  c3vgyD_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c3vgyD_.a3m 
DATE  Wed Jan  9 17:37:17 2013
LENG  30 match states, 30 columns in multiple alignment
FILT  26 out of 30 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  2.5 
EVD   0.5045  3.4675 
SEQ
>ss_dssp
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>sa_dssp
EEEDEEDDDDEDEDEEDEEEEDDEEDDEEE
>ss_pred
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>ss_conf
975119999998855689999999997409
>Consensus
WxNmTWxqWdreixNyTxxIyxllexaQxQ
>c3vgyD_
WNEMTWMEWEREIENYTKLIYKILEESQEQ
>UniRef50_Q9IDV2(595-624:836) Transmembrane protein gp41 n=2955 Tax=Primate lentivirus group RepID=ENV_HV1YB  E=7e-05 s/c=1.61 id=39% cov=103%
WXNLTWQQWDRKVRNYSGVIFDLIEQAQEQ
>UniRef50_Q8AIH5(624-653:871) Transmembrane protein gp41 n=57 Tax=Primate lentivirus group RepID=ENV_SIVTN  E=0.0001 s/c=1.58 id=52% cov=103%
WNNLTWQEWDRLVENSTGTIYSLLEKAQTQ
>UniRef50_Q699U6(620-649:840) Env protein n=3 Tax=Primate lentivirus group RepID=Q699U6_SIVCZ   E=0.0007 s/c=1.50 id=48% cov=103%
WENMTWHTWERQVDNLTDHIDNLLREAQEQ
>UniRef50_Q1A261(640-669:880) Transmembrane protein gp41 n=32471 Tax=Lentivirus RepID=ENV_SIVMB   E=2e-09 s/c=2.12 id=52% cov=103%
WYNMTWMQWDKEVSNYTDVIYNLLEKAQTQ
>UniRef50_D2XT72(668-697:901) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=D2XT72_9HIV1  E=6e-09 s/c=2.07 id=58% cov=103%
WDNMTWMQWEKEIDNYTQEIYKLIGEAQNQ
>UniRef50_Q1XE72(646-675:890) Env protein n=10 Tax=Primate lentivirus group RepID=Q1XE72_SIVCZ   E=0.0002 s/c=1.58 id=45% cov=103%
WQNMTWQEWEKLVDNASDTITVLLQEAQEQ
>UniRef50_Q79670(636-665:876) Transmembrane protein gp41 n=384 Tax=Primate lentivirus group RepID=ENV_HV1MV  E=0.0004 s/c=1.53 id=32% cov=103%
WDNLTWQQWDQHINNVSSIIYDEIQAAQDQ
>UniRef50_Q64G84(70-99:140) Envelope glycoprotein (Fragment) n=3 Tax=Human immunodeficiency virus 1 RepID=Q64G84_9HIV1  E=0.0005 s/c=1.51 id=58% cov=103%
WGNMTWLQWDREISNYTQLIQILLEDSQNQ
>UniRef50_Q6VG43(646-675:897) Env protein n=92 Tax=Primate lentivirus group RepID=Q6VG43_SIVCZ   E=0.0006 s/c=1.51 id=42% cov=103%
WENMTWQQWSRLVDNDTTTIQELLELAQRQ
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
W 1    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	1
       0	*	*	*	*	*	*	2495	0	0	

N 2    4037	*	1907	2394	*	2957	*	*	4924	*	*	2057	*	4372	*	*	*	*	*	4969	2
       0	*	*	*	*	*	*	2476	0	0	

E 3    *	*	*	4436	*	*	*	*	*	*	*	165	*	*	*	*	4020	*	*	*	3
       0	*	*	*	*	*	*	2495	0	0	

M 4    *	*	*	*	*	*	*	*	*	1894	452	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	2491	0	0	

T 5    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	5
       0	*	*	*	*	*	*	2491	0	0	

W 6    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	6
       0	*	*	*	*	*	*	2491	0	0	

M 7    *	*	*	*	*	*	3944	3640	*	3375	1474	*	*	1327	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	2491	0	0	

E 8    *	*	*	1266	*	*	*	*	*	*	*	*	*	946	*	*	3944	*	*	*	8
       0	*	*	*	*	*	*	2491	0	0	

W 9    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	9
       0	*	*	*	*	*	*	2491	0	0	

E 10   *	*	804	1417	*	*	*	*	*	*	*	*	*	*	*	4250	*	*	*	*	10
       0	*	*	*	*	*	*	2491	0	0	

R 11   *	*	*	*	*	*	*	*	1534	*	*	*	*	3937	763	*	*	*	*	*	11
       0	*	*	*	*	*	*	2491	0	0	

E 12   *	*	*	898	*	*	3937	*	4475	2134	*	*	*	2995	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	2491	0	0	

I 13   *	*	*	*	*	*	*	747	*	*	*	*	*	*	*	*	*	1308	*	*	13
       0	*	*	*	*	*	*	2491	0	0	

E 14   5024	*	1661	3687	*	*	*	*	*	*	*	2528	*	4117	4475	1739	*	*	*	*	14
       0	*	*	*	*	*	*	2491	0	0	

N 15   *	*	*	*	*	*	*	*	*	*	*	62	*	*	*	4577	*	*	*	*	15
       0	*	*	*	*	*	*	2491	0	0	

Y 16   3616	*	4250	*	*	*	*	4049	*	3944	*	*	*	*	*	3478	*	3937	*	772	16
       0	*	*	*	*	*	*	2491	0	0	

T 17   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	2213	350	*	*	*	17
       0	*	*	*	*	*	*	2491	0	0	

K 18   *	*	2063	*	*	1613	*	*	4457	*	*	5184	*	3035	*	2686	3586	*	*	*	18
       0	*	*	*	*	*	*	2491	0	0	

L 19   *	*	*	4840	*	*	3944	2951	4623	2244	*	*	*	4117	*	*	1656	2794	*	*	19
       0	*	*	*	*	*	*	2491	0	0	

I 20   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	2491	0	0	

Y 21   *	*	3944	*	3547	*	5076	*	*	*	*	*	*	3527	*	*	4477	*	*	539	21
       0	*	*	*	*	*	*	2491	0	0	

K 22   *	*	2574	2799	*	4623	*	4870	2831	*	*	2416	*	5030	4771	2527	*	4477	*	*	22
       0	*	*	*	*	*	*	2491	0	0	

I 23   *	*	*	2992	*	*	*	3277	*	375	*	*	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	2491	0	0	

L 24   *	*	*	*	*	*	*	1277	*	767	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	2491	0	0	

E 25   *	*	*	655	*	4840	*	*	4771	*	*	*	*	2131	3944	*	*	*	*	*	25
       0	*	*	*	*	*	*	2491	0	0	

E 26   3343	*	4870	1306	*	*	*	4117	3033	4250	*	3960	*	3791	*	*	*	3412	*	*	26
       0	*	*	*	*	*	*	2491	0	0	

S 27   875	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1137	*	*	*	*	27
       0	*	*	*	*	*	*	2397	0	0	

Q 28   4937	*	*	*	*	*	4096	*	4923	*	*	*	*	191	*	*	*	*	*	*	28
       0	*	*	*	*	*	*	2397	0	0	

E 29   *	*	3860	1688	*	*	*	3399	*	*	*	2140	*	*	4200	4539	2834	4021	*	*	29
       0	*	*	*	*	*	*	2397	0	0	

Q 30   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	30
       0	*	*	0	*	*	*	2400	0	0	

//