HHsearch 1.5 NAME c3vdoB_ FAM FILE c3vdoB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3vdoB_.a3m DATE Sat Apr 13 09:10:57 2013 LENG 73 match states, 73 columns in multiple alignment FILT 107 out of 154 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.0 EVD 0.4451 0.3091 SEQ >ss_dssp CCGGGGHHHHHTTCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHGGGGCCCCCHHHHHHHHHTTC >sa_dssp EEBCECADDBBDEECDEEDCDDADEDCEECEEECCDDADECBDDCDDEDEEDDEEEEEEEDEEDEEDEDEEEE >ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC >ss_conf 9379977987658999999999999973085666799999999999999996306767899799999999609 >Consensus xelxelxxxYxlgaLxxxExxxxexHLxxCxxCxxxxxrxExxxlxxtxxxlxxxxxxxPPpxLrxriLaxvr >c3vdoB_ FELLELATPYALNAVSDDERADIDRRVAAAPSPVAAAFNDEVRAVRETMAVVSAATTAEPPAHLRTAILDATK >UniRef50_Q82D60(26-106:272) Putative membrane protein n=2 Tax=Streptomyces RepID=Q82D60_STRAW E=5e-10 s/c=0.81 id=19% cov=96% -DVHETVGAYALGILDDAEATAFEAHLATCDWCAQQ--LDDLAGMEPMLAALAdlpssqgtpaigESLSARPSPRLAERLVDEV- >UniRef50_D1VEQ0(11-77:87) Putative transmembrane anti-sigma factor n=1 Tax=Frankia sp. EuI1c RepID=D1VEQ0_9ACTO E=9e-06 s/c=0.77 id=24% cov=93% -ELVEIVTDYLEGALDADTRRRFTEHLDLCDGCDAY-----VEQMRDTIRLAGTLQQDELRPDMRDKLLAAFR >UniRef50_A9B195(5-72:263) Putative transmembrane anti-sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B195_HERA2 E=0.0007 s/c=0.66 id=22% cov=93% -QLEELLIGYALGILSLDEQQSVEIQIANNP-----LLRTKIQQLQRTVHQLALAAPrVQPAPIVKQQLLARAR >UniRef50_A5D0C5(5-71:416) Hypothetical membrane protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D0C5_PELTS E=6e-09 s/c=0.93 id=19% cov=93% -EARELLSPYLDGELDAATGDMVSAHLAGCPEC-----RTEYNVLRELLNMFRGLPEVVPPSRISDRVINKIK >UniRef50_UPI0001AEF78F(12-77:236) hypothetical protein SghaA1_01277 n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AEF78F E=6e-06 s/c=0.79 id=25% cov=86% --LRDIAAEMALGVLPAQERAAALAHLQRCPAC-----LENVRELARTADELLHLIPgREPPGGFETRVL---- >UniRef50_C7QDX2(13-80:93) Anti-sigma factor n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QDX2_CATAD E=2e-05 s/c=0.74 id=21% cov=92% -EVLDHLYEYIDNEMPDEDCAAVKRHLDECQPC------LEKYGLDAMVKKLVQrcCGCDEPPVDLRDKVLARIR >UniRef50_Q13ZH3(5-68:320) Predicted transmembrane Transcriptional regulator (Anti-sigma factor) n=4 Tax=Burkholderia RepID=Q13ZH3_BURXL E=0.0002 s/c=0.73 id=24% cov=45% --------------------------------------RRESENLRALSGALRAAPYHRAPQSLRERIVA--- >UniRef50_Q1D4V0(5-71:302) Putative transmembrane regulator PrtR n=2 Tax=Myxococcus xanthus RepID=Q1D4V0_MYXXD E=0.001 s/c=0.67 id=21% cov=93% -DLERLLYPYLDGEFQPEERVDLETHLSGCADCRRRAEEEKQMQQALRRAARHSVSGMRAPASLRAGI----- >UniRef50_Q0B0L8(5-76:347) Putative transmembrane anti-sigma factor n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0L8_SYNWW E=3e-06 s/c=0.74 id=18% cov=100% -EAREFFSPWIDHEMEDAEREALQLHLDSCPDCQHELADWERISALLRESLAEAAEERTAPPELTRAVMITLR # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * F 1 * * * * 0 * * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 E 2 * * 1918 583 * * * * * * * * * 3879 * * * * * * 2 0 * * * * * * 5275 0 0 L 3 3585 * * * * * * 3950 * 825 * * * 5175 * * * 2110 * 5143 3 0 * * * * * * 5498 0 0 L 4 4117 4338 * 3861 5257 * 3064 4455 5380 2289 * 5543 * 5257 2292 * * 2984 * 5263 4 0 * * * * * * 5513 0 0 E 5 6060 * 2531 712 * 5128 * * * * * * * 6028 4936 3838 4184 * * * 5 0 * * * * * * 5694 0 0 L 6 * * 6084 6105 4071 * 4266 4882 * 625 3823 * * 4358 * * 5898 5646 * 5592 6 0 * * * * * * 5615 0 0 A 7 1717 6051 * * 5379 * * 4050 * 1709 5444 * * * 7050 4227 3785 3244 * 5144 7 0 * * * * * * 5604 0 0 T 8 2217 * * 2709 * 3177 * 4886 * * * * 2606 * * 2944 3632 5242 * 3536 8 0 * * * * * * 6181 0 0 P 9 1401 * 4240 3957 * 3322 * * * 2440 5656 * 2744 * * 5953 * 4858 * * 9 0 * * * * * * 6219 0 0 Y 10 * * * * 4494 * 5081 * * 6588 5122 * * * 6684 * * 5955 3907 332 10 0 * * * * * * 5990 0 0 A 11 1314 * * * 6294 5960 * 3294 * 2518 7345 * * * * 5699 * 2000 * 5862 11 0 * * * * * * 6261 0 0 L 12 * * 2380 5016 * 6017 * 4197 * 638 6146 5523 * * * 6476 * * * 5862 12 0 * * * * * * 6261 0 0 N 13 * * 2909 6422 * 684 3512 * * * * 3355 * * 6126 6546 * * * 5482 13 0 * * * * * * 6261 0 0 A 14 1014 * 3930 3144 * 5392 6145 4983 * 6544 7256 6338 * 4520 6794 5677 4312 3260 * * 14 0 * * * * * * 6264 0 0 V 15 5937 5555 * * 4807 * * 7046 * 356 4889 * * * * * 5688 3558 * * 15 0 * * * * * * 5997 0 0 S 16 4215 * 1492 3485 * 6273 * * * * * 5867 3422 5672 * 2038 3306 6192 * * 16 0 * * * * * * 5997 0 0 D 17 2494 * 2522 2646 * * * * 6192 4330 * * 1720 5447 6209 4397 5434 6109 * * 17 0 * * * * * * 5997 0 0 D 18 2414 * 2519 1772 * 4798 5254 * 5747 * * 6762 5319 3492 5724 4758 3900 5768 * * 18 0 * * * * * * 6017 0 0 E 19 6790 * 2994 458 * 6867 * 6457 * * * * * 4377 * 5973 4226 * * * 19 0 * * * * * * 6017 0 0 R 20 3295 5047 * 4073 * 6283 6598 4996 2951 4847 5248 * * 3928 1290 5935 4268 5598 * * 20 0 * * * * * * 6017 0 0 A 21 1982 * 4406 3227 4784 * 5664 6794 4765 4884 7019 5877 6631 3783 2308 4592 4315 4156 * * 21 0 * * * * * * 6017 0 0 D 22 1695 * 3847 2163 * 5573 * 6109 5879 3760 5772 8362 * 5437 2677 5406 5122 5720 * * 22 0 * * * * * * 6017 0 0 I 23 6333 6675 * * 1625 * * 3656 * 2500 6441 * * * * * * 1483 * 5153 23 0 * * * * * * 6017 0 0 D 24 4551 * 3762 640 * * * * 5423 5311 * 6752 * 3870 4071 6283 5447 6799 * 6453 24 33 * 5486 * * * * 6017 0 0 R 25 1539 6320 4010 3886 * 6817 5966 6195 5056 4758 * 5606 * 3017 2665 5188 4043 7629 * 6238 25 45 * 5036 * * * 0 6386 0 1389 R 26 4729 * 6164 5939 * * 465 * * 4556 * 4961 * 6117 4091 5432 * * 5455 6168 26 0 * * * * * 0 6316 0 2218 V 27 * * * * * * * 3589 * 269 4927 * * * * * * 4209 * * 27 25 5848 * 0 * * 0 6316 1000 2218 A 28 1672 * 3517 3037 * 5908 5752 * 3473 4818 5478 6389 4107 4250 3933 3958 4868 7109 * * 28 122 * 3627 * * * 0 6316 0 2218 A 29 3610 * 5266 2633 * 2685 4510 * 6413 5701 * 4835 * 3652 4570 3272 2144 6136 * * 29 69 * 4421 * * 2471 287 6236 0 3347 A 30 4568 302 5227 5837 * * * * * 5931 * 5018 * * * 6054 4635 * * * 30 30 * 5619 * * 2359 313 6148 0 3521 P 31 3289 * 2625 3071 * 4807 6903 * 6643 5082 4366 * 1267 5745 6322 6716 5583 7079 * * 31 44 * 5064 * * 3009 191 6225 0 3331 S 32 2025 * 2488 3300 6946 4022 * * * 6774 * * 4331 5066 3859 2539 4830 5104 6494 * 32 17 * 6440 * * * 0 6226 0 3509 P 33 4908 383 4259 5612 * * 6063 * * 5005 * * 5977 * * 5172 * 4735 * * 33 518 * 1730 * * 1007 993 6135 0 3501 V 34 1551 * 5557 4354 * * * 4346 4877 6231 5432 5395 * 2728 3480 4739 3059 4407 * * 34 247 * 2669 * * 3580 126 5737 0 4587 A 35 2023 * 4246 4464 * 6647 4212 * * 5044 * 4426 * 3391 2088 3757 * 6024 * 3391 35 294 5395 2639 1000 1000 3810 107 5624 1000 4899 A 36 2088 * * 2831 * 5054 * * * 4752 * * 2260 4638 3538 4208 5874 4348 * 3297 36 365 5429 2321 2322 322 3180 169 5626 1000 4980 A 37 2431 * 5709 1515 * * 4924 4109 * 3441 5246 * * 5705 4255 4007 * 3284 * * 37 126 5326 4097 2322 322 4268 77 5764 1000 5098 F 38 2741 4450 5348 4410 2380 * * 3310 4818 1843 4886 * * * * * 3941 5214 * * 38 23 5971 * 3700 115 1127 883 5388 1000 5172 N 39 3672 * 3432 5224 * * 5424 * 3539 4011 * 4877 * * 912 * 4841 * 5038 * 39 0 * * * * 1330 732 6115 0 4684 D 40 2429 * 2819 2503 * 4254 * * * 4063 * 4544 6578 4702 3005 5001 3892 4928 4791 * 40 28 * 5706 * * 956 1045 6232 0 3917 E 41 5347 * 4656 545 * 6165 6121 * 4697 5442 * 6285 * 3908 4050 * 6761 6425 * * 41 31 * 5544 * * 542 1675 6108 0 3320 V 42 3673 * * * 5103 * * 4480 5776 1490 5874 * * 4777 5877 6099 5403 1602 * 4829 42 0 * * * * 2000 415 6226 0 2257 R 43 2687 * 2950 2554 * 6837 6058 5207 5376 4591 4478 4826 * 3819 2091 * 5945 * * 5236 43 0 * * * * 1546 605 6245 0 1965 A 44 3196 * 4174 1971 * 3661 5440 * * 4004 * 7334 5592 2127 3703 4284 6920 5397 * * 44 0 * * * * * 0 6244 0 1616 V 45 4541 5782 * * 3624 * * 4231 * 938 3690 * * 4560 * 6298 4543 4100 * 4358 45 23 * 5989 * * 1000 1000 6244 0 1616 R 46 3364 * 5822 3400 * 5752 6839 * 3628 4738 * * * 2735 1450 3415 5123 * * 7374 46 0 * * * * 1023 977 6249 0 1553 E 47 2693 * 3825 1574 * 5459 * 6048 5152 3838 7073 5546 4771 3620 3767 5524 4390 6214 * * 47 0 * * * * * 0 6238 0 1000 T 48 2505 6548 5629 * * * 6552 5369 * 3439 4424 6090 * * 4738 3948 1271 3505 * * 48 0 * * * * * 0 6239 0 1000 M 49 2256 * 6352 5883 4347 * 5604 3716 * 2502 2883 * 5174 * 5610 5518 4357 2507 6835 * 49 12 * 6896 * * 0 * 6240 0 1000 A 50 1496 * 3621 3399 6613 3116 5083 * 5886 6088 * 4381 3695 5658 5504 4496 5361 4409 * * 50 14 * 6730 * * * 0 6270 0 1000 V 51 2470 * 5048 4216 5397 4621 5337 4631 4923 1963 4927 * 6991 4598 3912 5306 4121 3842 6002 * 51 17 * 6449 * * 1000 1000 6270 0 1522 V 52 4276 * * * 5165 * * 4474 * 721 4554 * * 5612 4963 * 4759 3570 * 4251 52 76 4289 * 1345 722 1000 1000 6259 2288 1667 S 53 1661 * 6208 4567 6315 2678 5135 * 6011 6379 * * 3543 5451 3451 3835 6328 4368 * 3791 53 37 5310 * 2157 366 0 * 6260 1849 1000 A 54 2441 * 5855 3743 5839 3943 3803 * * 3099 5173 6614 6610 3341 4594 3124 3443 6338 5050 6001 54 80 4814 5744 524 1715 * * 6267 2007 0 A 55 1529 5865 5216 * 5681 5834 * 5616 6444 2776 * * 5357 6775 5129 3087 3566 3079 6395 * 55 29 7138 6270 0 * 1000 1000 6256 1000 1448 T 56 3128 * 4097 3075 5555 3801 4273 5269 * 3347 5486 6944 3247 4966 5664 3064 3724 4137 * * 56 12 6883 * 0 * 879 1132 6271 1000 1564 T 57 2118 5857 5265 2301 * 4415 6357 6065 * * * * 1934 4841 6139 4018 4763 5280 * 6117 57 125 4286 4970 876 1136 * 0 6274 2500 1000 A 58 3010 * 4068 2123 * 6003 5347 4244 5436 4790 5071 6757 7160 5007 4732 7278 5207 1804 * * 58 100 3896 * 864 1150 0 * 6232 2759 1986 E 59 3946 * 4026 1462 * 7402 * 6925 5217 6210 * 6609 3476 3058 3904 4793 3289 5019 * * 59 108 3792 * 461 1869 * * 6270 2776 0 P 60 3522 * * * * * * 6484 * 4144 7184 * 335 * * * 6602 4836 * * 60 39 5225 * 452 1893 * * 6273 1906 0 P 61 3787 * 4402 * * 5321 * * * * * * 428 5828 6176 3639 * * * * 61 11 7053 * 2000 415 * * 6273 1000 0 A 62 2283 * 5801 4241 * 4529 5707 * 5322 5555 * * 1108 4681 6197 4403 5313 5270 * * 62 0 * * * * * * 6273 0 0 H 63 3490 * 2732 2989 * 2588 5107 6085 * 6183 * 6023 6316 5807 2769 2805 4635 * 4838 * 63 4 8347 * 1000 1000 * * 6273 1000 0 L 64 5238 * * * 3523 * * 5070 * 552 3721 * * * * 6821 5238 3980 * * 64 21 6134 * 1585 585 * * 6273 1000 0 R 65 5495 * * 4220 3942 6460 * 5552 2466 4454 * * 6590 * 1042 5719 4361 6076 5538 * 65 0 * * * * * * 6149 0 0 T 66 2585 * 1802 2810 * 5077 * 6084 5930 6904 * 5716 6284 3483 3842 4000 3816 6606 * * 66 0 * * * * * * 6155 0 0 A 67 3695 * 5467 4776 * 4129 * * 3485 6781 * 4991 * 4454 954 3258 6619 * * * 67 0 * * * * * * 6155 0 0 I 68 * * * * * * * 1479 * 1877 5725 * * * * * 5649 1598 * * 68 0 * * * * * * 6147 0 0 L 69 * * * * 4256 * * 5587 * 542 2318 * * * 5643 * * 5690 * * 69 0 * * * * * * 6059 0 0 D 70 1020 * 2582 4337 * 5258 * 5440 6564 6300 * 5552 * 4487 5073 4075 4315 6280 * * 70 0 * * * * * * 5974 0 0 A 71 1731 * 5443 2425 5975 * 6232 * 4572 * * 6185 * 2775 3065 3504 4298 * * * 71 0 * * * * * * 5946 0 0 T 72 2595 * * * 3827 * * 1730 * 3909 * * * * * * 5440 1423 * * 72 0 * * * * * * 5688 0 0 K 73 * * * * * * * * 2924 * * * * 3014 426 * * * * * 73 0 * * 0 * * * 5164 0 0 //