HHsearch 1.5 NAME c3vbhD_ FAM FILE c3vbhD_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3vbhD_.a3m DATE Sat Mar 3 11:40:43 2012 LENG 58 match states, 58 columns in multiple alignment FILT 10 out of 14 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.0 EVD 0.4825 3.0036 SEQ >ss_dssp CCCBCCCTTTTCSSCCCCCCCSSBGGGSCCCCCCCCCCTHHHHCCCSSCCCSSSCSCC >sa_dssp EEDDEDCEDDEDECECEDECEEECBEDCDEDEECEEEDDEEEECEDEEEDEEEDEEEE >ss_pred CCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCCC >ss_conf 9654332148744677775431010012222320000867766789999985132569 >Consensus sHexxnxasxgSxinytxINYykdsasxsaxkqdfsqDPsKFTxPVkDimxkxapxlx >c3vbhD_ SHENSNSATEGSTINYTTINYYKDSYAATAGKQSLKQDPDKFANPVKDIFTEMAAPLK >UniRef50_B3SRP0(12-69:2187) Polyprotein n=637 Tax=Picornaviridae RepID=B3SRP0_9ENTO E=9e-14 s/c=1.34 id=66% cov=102% SHENTNFAAGGSTINYTTINYYKDSYAASANKQDFSQDPSKFTQPVVDALKEGAPVLK >UniRef50_P06209(12-68:2206) RNA-directed RNA polymerase 3D-POL n=4988 Tax=root RepID=POLG_POL32 E=2e-11 s/c=1.22 id=59% cov=100% AHENSNRAYGGSTINYTTINYYKDSASNAASKQDYSQDPSKFTEPLKDVLIKTAPAL- >UniRef50_P04936(12-61:2150) RNA-directed RNA polymerase 3D-POL n=87 Tax=root RepID=POLG_HRV2 E=1e-06 s/c=1.08 id=45% cov=88% THSTQNSVSNGSSLNYFNINYFKDAASNGASKLEFTQDPSKFTDPVKDVL-------- >UniRef50_Q82081(12-68:855) Protein VP1 (Fragment) n=59 Tax=Enterovirus RepID=POLG_HRV3 E=2e-05 s/c=0.88 id=47% cov=100% SHENQNILTNGSNQTFTVINYYKDAASSSSAGQSFSMDPSKFTEPVKDLMLKGAPAL- >UniRef50_P36290(12-68:2214) RNA-directed RNA polymerase 3D-POL n=3134 Tax=Enterovirus RepID=POLG_CXA24 E=1e-23 s/c=1.93 id=59% cov=100% AHENTNVATGGSTVNYTTINYYKDSASNAASKLDFSQDPSKFTEPVKDIMLKSAPAL- >UniRef50_P03313(12-68:2185) RNA-directed RNA polymerase 3D-POL n=4566 Tax=root RepID=POLG_CXB3N E=2e-22 s/c=1.86 id=45% cov=100% AHETRLNASGNSIIHYTNINYYKDAASNSANRQDFTQDPGKFTEPVKDIMIKSLPAL- >UniRef50_P29813(12-68:2195) RNA-directed RNA polymerase 3D-POL n=2871 Tax=Picornaviridae RepID=POLG_EC11G E=6e-22 s/c=1.84 id=45% cov=100% AHETGLNASGSSIIHYTNINYYKDAASNSANRQEFSQDPGKFTEPVKDIMVKSLPAL- >UniRef50_P07210(12-69:2164) RNA-directed RNA polymerase 3D-POL n=290 Tax=root RepID=POLG_HRV89 E=8e-21 s/c=1.74 id=39% cov=102% THSTQNSVSNGSSLNYFNINYFKDAASSGASRLDFSQDPSKFTDPVKDVLEKGIPTLQ >UniRef50_Q8QUZ7(12-69:115) Capsid protein VP4 n=2 Tax=Porcine enterovirus B RepID=Q8QUZ7_PEV9U E=1e-18 s/c=1.62 id=47% cov=102% SHTTVTQASGGSHINYTNINYYSHSASASQNKQDITQDPSKFTQPVVDMMKEAAVPVR # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 1571 * * * * * * * * * * * * * * 1053 2463 * * * 1 0 * * * * * * 2038 0 0 H 2 * * * * * * 0 * * * * * * * * * * * * * 2 0 * * * * * * 2038 0 0 E 3 * * * 546 * * * * * * * * * * * 2463 2900 * * * 3 0 * * * * * * 2038 0 0 N 4 * * * * * * * * * * * 965 * * * * 1036 * * * 4 0 * * * * * * 2038 0 0 S 5 * * * * * 3516 * * * * * * * 1703 3557 2196 2570 2900 * * 5 0 * * * * * * 2038 0 0 N 6 * * * * * * * * * 2537 * 528 * * * * 2900 * * * 6 0 * * * * * * 2038 0 0 S 7 * * * * 3438 * * 2990 * * * 2537 * 2900 3503 1684 * 3716 * * 7 0 * * * * * * 2038 0 0 A 8 529 * * * * * * * * 2990 * * * * * * * 2463 * * 8 0 * * * * * * 2038 0 0 T 9 3438 * * * * * * * * * * * * * * 1036 1591 * * 3503 9 0 * * * * * * 2038 0 0 E 10 * * * 2943 * 829 * * * * * 1703 * * * * * * * * 10 0 * * * * * * 2038 0 0 G 11 * * * * * 273 * * * * * 3557 * * * 3516 * * * * 11 0 * * * * * * 2038 0 0 S 12 * * * * * * * * * * * * * * * 0 * * * * 12 0 * * * * * * 2038 0 0 T 13 * * * * * * 2900 2537 * * * 2990 * * * 2463 1371 * * * 13 0 * * * * * * 2038 0 0 I 14 * * * * * * * 697 * 2463 * * * 2990 * * * 3716 * * 14 0 * * * * * * 2038 0 0 N 15 * * * * * * 2537 * * * * 511 * * * * 2990 * * * 15 0 * * * * * * 2038 0 0 Y 16 * * * * 2990 * * * * * * * * * * * * * * 194 16 0 * * * * * * 2038 0 0 T 17 * * * * 2463 * * * * * * * * * * * 289 * * * 17 0 * * * * * * 2038 0 0 T 18 * * * * * * * * * * * 1036 * * * * 1371 2990 * * 18 0 * * * * * * 2038 0 0 I 19 * * * * * * * 0 * * * * * * * * * * * * 19 0 * * * * * * 2038 0 0 N 20 * * * * * * * * * * * 0 * * * * * * * * 20 0 * * * * * * 2038 0 0 Y 21 * * * * * * * * * * * * * * * * * * * 0 21 0 * * * * * * 2038 0 0 Y 22 * * * * 2463 * * * * * * * * * * * * * * 289 22 0 * * * * * * 2038 0 0 K 23 * * * * * * * * 208 * * * * * * 2900 * * * * 23 0 * * * * * * 2038 0 0 D 24 * * 208 * * * 2900 * * * * * * * * * * * * * 24 0 * * * * * * 2038 0 0 S 25 1060 * * * * * * * * * * * * * * 942 * * * * 25 0 * * * * * * 2038 0 0 Y 26 363 * * * * * * * * * * * * * * * * * * 2170 26 0 * * * * * * 2038 0 0 A 27 2170 * * * * * * * * * * * * * * 363 * * * * 27 0 * * * * * * 2038 0 0 A 28 1489 * * * * * * * * * * 1257 * * * 2150 * * * * 28 0 * * * * * * 2038 0 0 T 29 2606 * * * * 2463 * * * * * * * * * 931 2943 * * * 29 0 * * * * * * 2038 0 0 A 30 434 * * * * * * * * * * * * 2900 * 2990 * * * * 30 0 * * * * * * 2038 0 0 G 31 2990 * * * * 2943 * * * * * 1327 * * * 1533 * * * * 31 0 * * * * * * 2038 0 0 K 32 * * * * * 2990 * * 731 * * * * * 1880 * * * * * 32 0 * * * * * * 2038 0 0 Q 33 * * * * * * * * * 1958 * * * 429 * * * * * * 33 0 * * * * * * 2038 0 0 S 34 * * 799 2563 * * * * * * * * * * * 1967 * * * * 34 0 * * * * * * 2038 0 0 L 35 * * * * 626 * * 2900 * 2943 * * * * * * * * * 3503 35 0 * * * * * * 2038 0 0 K 36 * * * * * * * * 2943 * * * * * * 813 1733 * * * 36 0 * * * * * * 2038 0 0 Q 37 * * * * * * * * * * 2990 * * 194 * * * * * * 37 0 * * * * * * 2038 0 0 D 38 * * 0 * * * * * * * * * * * * * * * * * 38 0 * * * * * * 2038 0 0 P 39 * * * * * * * * * * * * 0 * * * * * * * 39 0 * * * * * * 2038 0 0 D 40 * * 2943 * * 2537 * * * * * * * * * 519 * * * * 40 0 * * * * * * 2038 0 0 K 41 * * * * * * * * 0 * * * * * * * * * * * 41 0 * * * * * * 2038 0 0 F 42 * * * * 0 * * * * * * * * * * * * * * * 42 0 * * * * * * 2038 0 0 A 43 2943 * * * * * * * * * * * * * * * 201 * * * 43 0 * * * * * * 2038 0 0 N 44 * * 2463 1113 * * * * * * * 2943 * 2144 * * * * * * 44 0 * * * * * * 2038 0 0 P 45 * * * * * * * * * * * * 0 * * * * * * * 45 0 * * * * * * 2038 0 0 V 46 * * * * * * * * * 3503 * * * * * * * 133 * * 46 0 * * * * * * 2038 0 0 K 47 * * * * * * * * 370 * * * * * * * * 2144 * * 47 0 * * * * * * 2038 0 0 D 48 * * 0 * * * * * * * * * * * * * * * * * 48 0 * * * * * * 2038 0 0 I 49 3438 * * * * * * 1402 * 2990 2900 * * * * * * 1892 * * 49 0 * * * * * * 2038 0 0 F 50 * * * * 2943 * * * * 1467 976 * * * * * * * * * 50 0 * * * * * * 2038 0 0 T 51 * * * 2883 * * * 2433 2083 2225 * * * * * * 2900 3388 * * 51 0 * * * * * * 2029 0 0 E 52 * * * 1435 * * * * 666 * * * * * * * * * * * 52 0 * * * * * * 2029 0 0 M 53 2843 * * * * 1460 * * * * 2900 * * * * 1893 3412 * * * 53 0 * * * * * * 2029 0 0 A 54 561 * * * * * * 2883 * 2421 * * * * * * * * * * 54 0 * * * * * * 2029 0 0 A 55 2900 * * * * * * * * * * * 461 * * * * 2843 * * 55 0 * * * * * * 2029 0 0 P 56 1016 * * * * * * * * * * * 1871 * * * 2883 3373 * * 56 0 * * * * * * 2029 0 0 L 57 * * * * * * * * * 217 * * * * * * * 2843 * * 57 0 * * * * * * 2029 0 0 K 58 * * * * * * * * 1130 * * * * 1792 1975 * * * * * 58 0 * * 0 * * * 1800 0 0 //