HHsearch 1.5 NAME c3uzeC_ FAM FILE c3uzeC_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3uzeC_.a3m DATE Sat Feb 25 11:29:37 2012 LENG 94 match states, 94 columns in multiple alignment FILT 15 out of 19 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.0 EVD 0.4228 0.4558 SEQ >ss_dssp CCBCCSCEEESSCCBCCCCEEEEEEECCSCCSEECCEEEECTTSCBCCCEECSSSCEESCCCEEEEECCSEEEEEEESSTTTSEEEEEEECCCC >sa_dssp EEDAECCBDDEEECDEEDBADACADBDAEDCDADBBCDBCCEEDEEDECDDCCEEBCBEEEDEACACABDCDACABABDEEEBCEBECECEEEE >ss_pred CCCCCCCEEEEECCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEECCCEEEEEEEEEECCCCCCCEEEECCCCCCEEEEHHCCCCC >ss_conf 9223771599762577766999999638888626579984488873121587248511001789952899864899813676142101046789 >Consensus YxmCxxxfxxxKxpsxHgTVvmeVxyxgxxxPCkIPvxvxdxxxxxxxGrLITxNPivxxkvxIExePPfGdSxIxVGxgxxxlxxxWxkkGxx >c3uzeC_ YAMCLNTFVLKKEVSEHGTILIKVEYKGEDAPCKIPFSTEDGQGKAHNGRLITANPVVTKKVNIEAEPPFGESNIVIGIGDKALKINWYRKGPF >UniRef50_Q91KY8(187-280:280) Envelope protein (Fragment) n=2 Tax=Aroa virus RepID=Q91KY8_9FLAV E=2e-13 s/c=0.82 id=44% cov=95% YAQCTGSFKMEKSPADtgHGTVVLDISYQGSEAPCKVPIVITPNLAEIEPvGRLVSAHPVVTGKnvrTMIEVEPPYGDSYIIIGTGDGKLKQHW------ >UniRef50_C1KC23(301-397:497) Envelope protein (Fragment) n=1 Tax=Chaoyang virus RepID=C1KC23_9FLAV E=5e-32 s/c=1.42 id=42% cov=99% YVTCAQAFTFAKRPVDtgHGTVVFQVSYAGTDAPCKIPVAVTDKPNGEHVGRLVTAHPFIAkqnEKAVVEVEPPFGDSYIEIGAGTTKISEAWHKPG-- >UniRef50_Q91KY7(188-287:291) Envelope protein (Fragment) n=1 Tax=Spondweni virus RepID=Q91KY7_9FLAV E=2e-31 s/c=1.36 id=46% cov=99% YALCTGAFTFARTPSEtiHGTATVELQYAGEDGPCKVPIVITsDTNSMASTGRLITANPVVTEsgansKMMVEIDPPFGDSYIIVGTGTTKITHHWHRAG -- >UniRef50_B5KM05(582-678:3418) Polyprotein (Fragment) n=1 Tax=Barkedji virus RepID=B5KM05_9FLAV E=1e-30 s/c=1.37 id=43% cov=99% FVTCGGTFSFSKQPSDtgHGTVIMEVTTTTSSVPCRLLMGFEDASGKTIKGRLITVNPIVITAntgVIVEMEPPFGESFITVGSGTTMIKYAWHRKG-- >UniRef50_Q1X881(582-678:3412) Methyltransferase/RNA-directed RNA polymerase NS5 n=397 Tax=Flavivirus RepID=POLG_YEFVN E=3e-29 s/c=1.33 id=39% cov=98% YKMCTDKMSFVKNPTDtgHGTVVMQVKVP-KGAPCKIPVIVADDLTAAvNKGILVTVNPIASTNddeVLIEVNPPFGDSYIIVGTGDSRLTYQWHKEG-- >UniRef50_B9TRQ0(594-690:3442) Polyprotein n=705 Tax=Flavivirus RepID=B9TRQ0_9FLAV E=3e-28 s/c=1.30 id=44% cov=99% YPVCPNTVVLTKEPVDtgHSTVVVEVKLSTFTMACRLAVTFTDAAGTKITGRLITVNPIITaadEKVTIEMEPPFGESFIEIGVTADSVKHHWNRKG-- >UniRef50_Q9JAD5(563-656:3379) Polyprotein n=215 Tax=root RepID=Q9JAD5_9FLAV E=3e-24 s/c=1.19 id=44% cov=95% YQMCSSSFVWHKRPvaTQHGTVAMEVKYKGSDAPCRIPVSVEkEGYNGKNFGNLITANPFAANNeavVFLELEAPLGVSTIKVGGA----VFQWKQEG-- >UniRef50_Q04538(582-675:3415) Methyltransferase/RNA-directed RNA polymerase NS5 n=425 Tax=root RepID=POLG_POWVL E=3e-28 s/c=1.34 id=36% cov=95% YSMCDKAKFKWKRVpvdSGHDTVVMEVSYTGSDKPCRIPVrAVAHGVPAVNVAMLITPNPTIETNggGFIEMQLPPGDNIIYVG----DLSQQWFQKG-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Y 1 * * * * 3663 * * * * * * * * * * * * * * 119 1 0 * * * * * * 3027 0 0 A 2 2302 * * * * 4045 * * 3305 * * * 3524 3631 * 2945 2825 2344 * * 2 0 * * * * * * 3027 0 0 M 3 * * * * * * * * * 3880 836 * * 3758 * * 2809 2686 * * 3 0 * * * * * * 3027 0 0 C 4 * 0 * * * * * * * * * * * * * * * * * * 4 0 * * * * * * 3027 0 0 L 5 3971 * 2949 * * 3663 * * 3782 4038 * * 3524 * * 3631 1229 * * * 5 0 * * * * * * 3027 0 0 N 6 * * 3305 4045 * 1264 * * 2949 * * 2758 * 3971 * 3631 * * * * 6 78 4250 * 1000 1000 * * 3027 1000 0 T 7 2375 * * * * 3782 * * 2491 * * * * * * 1935 1760 * * * 7 0 * * * * * * 3027 0 0 F 8 * * * * 594 * * * 2949 * 4364 * * * * * * 3524 * 3782 8 0 * * * * * * 3027 0 0 V 9 * * * * 2949 * * * 2345 * * * * * * 2321 2379 1831 * * 9 0 * * * * * * 3027 0 0 L 10 * * * * 1349 * * 3862 3138 2307 3758 * * * * * 3869 * 3631 * 10 0 * * * * * * 3027 0 0 K 11 2925 * * 2964 * * 3631 * 4038 * * 4250 * * * 2236 3524 3091 2949 * 11 0 * * * * * * 3027 0 0 K 12 * * * * * * * * 185 * * * 4250 * 3880 * * * * * 12 0 * * * * * * 3027 0 0 E 13 * * * 1885 * * * * * * * 3195 * 3663 1868 3758 2372 * * * 13 102 3869 * 1585 585 * * 3027 1000 0 V 14 * * 3047 * * * * 3862 * * * * 657 * * * * 2505 * * 14 348 2221 * 1194 829 * * 3027 1762 0 S 15 1957 * * * * * * * * * * * * * * 1287 2459 2730 * * 15 0 * * * * * * 3027 0 0 E 16 * * 1277 1990 * 1973 * * * * * * * 3631 * * * * * * 16 1335 728 * 1000 1000 * * 3027 2571 0 H 17 * * * * * * 0 * * * * * * * * * * * * * 17 0 * * * * * * 3027 0 0 G 18 * * 2949 * * 492 * * * * * * * 3782 * 3524 * * * * 18 0 * * * * * * 3027 0 0 T 19 * * * * * * * * * * * * * * * * 0 * * * 19 0 * * * * * * 3027 0 0 I 20 3880 * * * * * * 2947 * * * * * * * * * 318 * * 20 0 * * * * * * 3027 0 0 L 21 3631 * * * * * * 2722 * 3119 * * * * * * 3880 774 * * 21 0 * * * * * * 3027 0 0 I 22 * * * * 3971 * * 2947 * 2894 1111 * * * * * * 2258 * * 22 0 * * * * * * 3027 0 0 K 23 * * 3758 987 * * * * 2905 * * * * 2190 3862 * * * * * 23 0 * * * * * * 3027 0 0 V 24 * * * * * * * 3758 * 2960 * * * * * * * 326 * * 24 0 * * * * * * 3027 0 0 E 25 * * * 4038 * 3869 * * 1337 * * * * 2342 * 2331 3663 * * * 25 0 * * * * * * 3027 0 0 Y 26 * * * * 3869 * * * * 3524 * * * * * * 3663 2524 * 757 26 0 * * * * * * 3027 0 0 K 27 2925 * * 3023 * * * * 2820 * * * 3305 3758 * 2133 2318 * * * 27 275 * 2524 * * * * 3027 0 0 G 28 * * * * * 319 * * * * * * * * * * 2333 * * * 28 0 * * * * 0 * 2902 0 1411 E 29 * * 3862 2957 3524 * * * 2524 * * * * * * 1493 2423 * * * 29 102 * 3869 * * * * 3027 0 0 D 30 3708 * 1011 3717 * 2490 * * * * * * * * * 3609 3454 * * * 30 0 * * * * 0 * 2982 0 1000 A 31 1202 * * * * 2960 * * 4034 * 3524 * * * 3869 3862 3782 3663 * * 31 0 * * * * * * 3027 0 0 P 32 3524 * * * * * * * * * * * 131 * * * * * * * 32 0 * * * * * * 3027 0 0 C 33 * 0 * * * * * * * * * * * * * * * * * * 33 0 * * * * * * 3027 0 0 K 34 * * * * * * * * 859 * * * * * 1156 * * * * * 34 0 * * * * * * 3027 0 0 I 35 * * * * * * * 531 * 2592 * * * * * * * 2818 * * 35 0 * * * * * * 3027 0 0 P 36 3524 * * * * * * * * 3663 * * 262 * * * * * * * 36 0 * * * * * * 3027 0 0 F 37 * * * * 2443 * * 2304 * * 3663 * * * * * * 903 * * 37 304 2395 * 0 * * * 3027 1560 0 S 38 1911 * * 3862 * 3663 * 3305 * * * * * * * 1963 3524 2818 * * 38 0 * * * * * * 3027 0 0 T 39 * * * * 2592 * * 2247 * * * * * * * * 3119 976 * * 39 0 * * * * * * 3027 0 0 E 40 1780 * * 2181 * * * 3782 * * 3862 * * 4205 * * 1773 * * * 40 232 2750 * 0 * * * 3027 1542 0 D 41 * * 610 3631 * * 2949 * * * * * 3758 * * 4045 * * * * 41 0 * * * * * * 3027 0 0 G 42 2592 * 3305 4205 * 1883 * * 3971 2951 * 3758 * * * 3782 3880 * * * 42 109 3782 * 0 * * * 3027 1000 0 Q 43 3524 * * 3862 * * * * 4205 2514 * 2960 3971 2905 * 3663 * 2949 * 3631 43 0 * * * * * * 3027 0 0 G 44 3758 * 4045 * * 1831 * * 3862 * * 2791 2949 * * 2830 3305 * * * 44 0 * * * * * * 3027 0 0 K 45 2624 * * 2813 * 2791 * * 2838 * 2960 3782 * * 3862 * 3524 4205 * * 45 0 * * * * * * 3027 0 0 A 46 2120 * * 3971 * * 3862 2770 2576 * * * * * * * 2368 2949 * * 46 72 4364 * 0 * * * 3027 1000 0 H 47 * * * 3758 * * 3004 2592 * * * 1593 4045 4205 * 3880 * 3043 * * 47 0 * * * * * * 3027 0 0 N 48 * * * * 3631 * * * 2971 3862 * 2576 3758 * 3782 * 2691 1978 * * 48 288 2983 4205 0 * * * 3027 1468 0 G 49 2894 * * * * 208 * * * * * * * * * * * * * * 49 0 * * * * 0 * 3020 0 1000 R 50 * * * * * * * 3305 * * 2949 3631 * * 699 * * 3782 * * 50 0 * * * * * * 3027 0 0 L 51 * * * * * * * * * 206 4045 * * * * * * 3782 * * 51 0 * * * * * * 3027 0 0 I 52 * * * * * * * 671 * * * * * * * * * 1426 * * 52 0 * * * * * * 3027 0 0 T 53 * * * * * * * * * * * * * * * 3758 111 * * * 53 0 * * * * * * 3027 0 0 A 54 1114 * * * * * * * * * * * 2949 * * * 3782 1574 * * 54 0 * * * * * * 3027 0 0 N 55 * * * * * * 2861 * * * * 214 * * * * * * * * 55 0 * * * * * * 3027 0 0 P 56 * * * * * * * * * * * * 0 * * * * * * * 56 0 * * * * * * 3027 0 0 V 57 * * * * 2791 * * 1358 * * * * * * * * 2949 1860 * 4045 57 109 3782 * 1585 585 * * 3027 1000 0 V 58 1974 * * * * * * 2239 * * 3869 * * * * * * 1104 * * 58 0 * * * * * * 3027 0 0 T 59 1848 * * 2949 * * * 3663 * * * * * * * 3305 1277 * * * 59 236 2730 * 1585 585 * * 3027 1514 0 K 60 * * 4205 1799 * 3758 * * 4038 * * 2745 * * * 4045 1672 * * * 60 288 2465 * 2142 371 * * 3027 1686 0 K 61 3663 * * 2997 * * * * 897 * * 1950 * * * * * * * * 61 1104 903 * 1461 651 * * 3027 2670 0 V 62 3971 * * * * 2949 * * * * 3880 * * * * * 3758 589 * * 62 0 * * * * * * 3027 0 0 N 63 * * * * 2250 * * 3663 * 2628 2221 2443 * * * * 3524 3971 * * 63 0 * * * * * * 3027 0 0 I 64 * * * * * * * 626 * 3631 * * * * * * * 1882 * * 64 0 * * * * * * 3027 0 0 E 65 * * * 0 * * * * * * * * * * * * * * * * 65 0 * * * * * * 3027 0 0 A 66 2947 * * * * * * 2960 * 3631 1759 * * * * * 4205 1683 * * 66 0 * * * * * * 3027 0 0 E 67 * * 3880 669 * * * * * * * 3305 * 2949 * * * 3782 * * 67 0 * * * * * * 3027 0 0 P 68 3631 * * * * * * * * 2949 * * 340 * * * * * * * 68 0 * * * * * * 3027 0 0 P 69 * * * * * * * * * * * * 0 * * * * * * * 69 0 * * * * * * 3027 0 0 F 70 * * * * 482 * * * * 3631 * * 2949 * * * * * * 3758 70 0 * * * * * * 3027 0 0 G 71 * * * * * 0 * * * * * * * * * * * * * * 71 0 * * * * * * 3027 0 0 E 72 * * 822 1500 * * * * * * * * * * * * * 3631 * * 72 0 * * * * * * 3027 0 0 S 73 * * * * * * * * * * * 2949 * * * 200 * * * * 73 0 * * * * * * 3027 0 0 N 74 * * * * 2592 * * 2949 * * * 4038 * * * * 3631 3782 * 1028 74 0 * * * * * * 3027 0 0 I 75 * * * * * * * 0 * * * * * * * * * * * * 75 0 * * * * * * 3027 0 0 V 76 * * * 2730 * * * 1682 3631 * * * * * * * 2722 2509 * 2949 76 0 * * * * * * 3027 0 0 I 77 * * * * * * * 1228 * * * * * * * * * 803 * * 77 0 * * * * * * 3027 0 0 G 78 * * * * * 0 * * * * * * * * * * * * * * 78 200 * 2949 * * * * 3027 0 0 I 79 2877 * * * * 3370 * 3864 * * * 3532 * * 3838 3500 1846 2510 * * 79 0 * * * * * 0 2855 0 1125 G 80 3370 * * 3702 * 459 * * * * * * * * * * 3340 * * * 80 147 * 3370 * * * 0 2855 0 1125 D 81 3215 * 1388 2600 * * * * * * * * 3583 * * * 1933 * * * 81 0 * * * * * 0 2728 0 1502 K 82 * * 2288 * * 2526 * * 2159 * * * * * * 2880 1933 * * * 82 0 * * * * 737 1322 2728 0 1502 A 83 2980 * 2794 * * * * * 2172 * 3574 * * 2840 2396 3418 * * * * 83 0 * * * * * 0 2930 0 1000 L 84 * * * * * * * 1770 * 705 * * * * * * * 3418 * * 84 0 * * * * 0 * 2930 0 1000 K 85 * * * * * * * * 1239 * * 2954 * * * 3002 2048 3631 * * 85 0 * * * * * * 3027 0 0 I 86 * * * 3971 3631 * 1817 4038 * 3862 * * * 2402 * * * * * 1984 86 0 * * * * * * 3027 0 0 N 87 2809 4205 3862 * * * 1789 * * * * 4038 * 1381 * * * * * * 87 0 * * * * * * 3027 0 0 W 88 * * * * * * * * * * * * * * * * * * 0 * 88 0 * * * * * * 3027 0 0 Y 89 * * * * 1875 * 1040 * 3551 * * 3462 * * * * * * * 3942 89 0 * * * * * * 2964 0 0 R 90 * * * * * * * * 1384 * * * * 1734 1661 * * * * * 90 0 * * * * * * 2964 0 0 K 91 3682 * * 1558 * * * * 969 * * * 3805 * * * * * * * 91 0 * * * * * * 2964 0 0 G 92 * * * * * 0 * * * * * * * * * * * * * * 92 0 * * * * * * 2964 0 0 P 93 * * * * * * * * * * * * 0 * * * * * * * 93 0 * * * * * * 1000 0 0 F 94 * * * * 0 * * * * * * * * * * * * * * * 94 0 * * 0 * * * 1000 0 0 //