HHsearch 1.5 NAME c3ucsB_ FAM FILE c3ucsB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3ucsB_.a3m DATE Sat Jul 6 08:27:51 2013 LENG 100 match states, 100 columns in multiple alignment FILT 147 out of 987 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 8.0 EVD 0.4035 -0.8804 SEQ >ss_dssp CCCCCEEEHHHHHHHHCCCHHHHHHHHHTTSSCCSSTTSSSCEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC >sa_dssp EEEECDBDCEDABEEBEBDDECADDACEDECBEBEEDECEECDACDDBBEDADDACDBCDEEEDEADDACECBEEDDDEDDDEEDEEDDEEDEEEEEEEE >ss_pred CCEEEEEEHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 9068895499998895899999999987272012544476531498999999999986310368989987633100028999999999999999998469 >Consensus xxxxxxxtixexaxxxgvsxxxlrxyxxxGllxPxxxxxxxxxyxxxxxxxxxxixrlxrxlgxxlxxIxxilxlxdxxxxLxxxlxxLxxxlxrlxaxx >c3ucsB_ ATVTVTFTITELCLRTGVSEEELTEIVGLGMIEPHQPQADTWLFDDSAVTIVHRAVRLRNELELDWPGIAVALTLLDENARLTRENRLLQQRLARFLAHG >UniRef50_A6LV08(1-95:130) Putative transcriptional regulator, MerR family n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LV08_CLOB8 E=1e-05 s/c=0.54 id=17% cov=23% ----------------------------------------------------------------------------DNIISIDTKIELLQEKIKEVEE-- >UniRef50_UPI0001C42933(30-133:161) mercuric resistance operon regulatory protein MerR n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42933 E=2e-05 s/c=0.48 id=13% cov=23% -------------------------------------------------------------------------DMFEFVSKKEEEVQKQIEDLKR----- >UniRef50_Q1BA89(4-93:140) Transcriptional regulator, MerR family n=3 Tax=Mycobacterium RepID=Q1BA89_MYCSS E=0.0008 s/c=0.50 id=15% cov=66% -----------------------------GLVRPQGRRSGRRMYGPDELRRLA-LLKIVHGLGLPLGTAVAVLDAPSEQWRetVREQIAELDRVIAR--- -- >UniRef50_Q2SGR9(3-110:119) Predicted transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SGR9_HAHCH E=0.0008 s/c=0.42 id=16% cov=32% -------------------------------------------------------------------AIAMVKLKRETLHEEMQAIQSLDKRLKQLQE-- >UniRef50_Q97TD4(1-102:123) Transcriptional regulator, MerR family n=6 Tax=Bacteria RepID=Q97TD4_CLOAB E=4e-05 s/c=0.48 id=15% cov=26% -------------------------------------------------------------------------TLEERFEMLIAHRENLKKEINSYIE-- >UniRef50_Q9RDQ6(71-160:196) Putative merR-family transciptional regulator n=2 Tax=Streptomyces RepID=Q9RDQ6_STRCO E=0.0003 s/c=0.52 id=17% cov=23% -------------------------------------------------------------------------EMVREGESTYPDRRELLESTRR----- >UniRef50_C9L5W5(5-101:269) Transcriptional regulator, MerR family n=9 Tax=Firmicutes RepID=C9L5W5_RUMHA E=3e-05 s/c=0.51 id=13% cov=95% ---TKLLTTAEFAKLHDVNKRTLHYYDSIGLFSPAKKGENQYRYYETSQSMEFEYIRMLKELNMSMEEIKKYIEYPNSKDFLQladAKISEIDRQMEKLI --- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 T 2 * * * * * * * * * * * 579 * * * * 1597 * * * 2 0 * * * * * * 2358 0 0 V 3 * * * * * * * 1436 * * 1113 * * * * * * 2574 * * 3 0 * * * * * * 3582 0 0 T 4 * * 3440 2022 * * * 3536 * * * * * * * 3831 985 * * * 4 0 * * * * * * 4914 0 0 V 5 3765 * * * * * * 2546 4402 2705 3672 4212 * * * * 3434 1601 * * 5 0 * * * * * * 5988 0 0 T 6 * * * 5729 5038 * * * 4194 2472 5976 * 5787 4620 2341 3206 1700 5174 * * 6 0 * * * * * * 6729 0 0 F 7 * * * * 2334 * * 3211 * 1854 3708 * * * * * * 4059 5546 1948 7 0 * * * * * * 7192 0 0 T 8 5887 * 5191 * * * * * 3486 5716 5708 * 5783 6162 4687 1652 1298 4952 * * 8 0 * * * * * * 7296 0 0 I 9 6650 5986 * * 4146 * * 937 * 2837 4369 * * * 4499 * 4698 3135 * 6555 9 0 * * * * * * 7400 0 0 T 10 5561 * 5891 2687 * 1661 5312 4811 4093 * * 4532 6129 5724 4530 2598 3538 * * * 10 0 * * * * * * 7492 0 0 E 11 6007 * 3089 739 * 5378 6120 * 4174 * 5905 * * 3375 6873 7135 6245 4958 * * 11 0 * * * * * * 7478 0 0 L 12 3485 * * * 2393 * * 3384 * 1683 4882 * * * * * * 1841 * * 12 0 * * * * * * 7478 0 0 C 13 1151 2422 * 6140 * * * * * 5461 4787 * * * 6340 2109 * 4446 * * 13 0 * * * * * * 7478 0 0 L 14 3837 * 5050 2749 * 4563 5499 5732 2347 4525 * 6150 * 3148 2078 6120 6046 5436 * 6443 14 0 * * * * * * 7478 0 0 R 15 3351 4928 * 4802 6691 5564 4593 4410 4339 1934 4019 * * 4282 2651 4257 5294 4726 * 6046 15 0 * * * * * * 7478 0 0 T 16 3374 2681 6005 * 3446 5257 4162 6396 * 3316 * * * * 6277 3294 2443 3826 * 3704 16 0 * * * * * * 7478 0 0 G 17 5355 5200 3347 5304 * 887 4011 * 4651 * * 3544 * 4351 4396 * * * * * 17 19 6248 * 0 * * * 7476 1000 0 V 18 5204 4936 * * * 6153 * 2343 6765 2096 4142 * * 6593 * * 5386 1394 6103 * 18 0 * * * * * * 7476 0 0 S 19 4021 * 4304 3674 * 6080 3408 * 6380 * * 5456 3422 6645 5939 1281 2893 * * * 19 0 * * * * * * 7476 0 0 E 20 3065 * * 3773 * * * 3839 4467 5060 7044 * 2568 5314 3883 4179 3749 2006 * 6103 20 0 * * * * * * 7476 0 0 E 21 3609 * 3505 2996 * 6122 5011 * 3205 6450 * 5710 5655 3220 2304 2990 4290 * * 6186 21 0 * * * * * * 7476 0 0 E 22 4255 * 6248 4759 3565 * * 4771 5747 3480 3020 5568 * 6564 6205 * 1517 3295 4369 * 22 0 * * * * * * 7476 0 0 L 23 5358 * * * 5237 * * 1947 * 963 * * * * * * * 2501 * * 23 0 * * * * * * 7476 0 0 T 24 6326 * 4439 4763 * * 3593 4398 4851 3758 * 5179 * 4139 998 * 5617 4722 * 5487 24 0 * * * * * * 7476 0 0 E 25 4649 * 6580 2805 3206 6058 2677 6281 5839 5266 * * * 4649 3958 4911 5812 4828 * 1837 25 0 * * * * * * 7476 0 0 I 26 * * * * 4507 * * 6540 * 2269 4948 * * * 5327 * * 6010 3147 857 26 0 * * * * * * 7476 0 0 V 27 * 5210 2362 1679 6639 5252 6731 2739 * 5141 * * * 5644 5339 4877 6349 2723 * * 27 15 6637 * 0 * * * 7476 1000 0 G 28 3805 * 2726 1821 6801 5474 6136 6633 3363 * * 5138 * 3886 3151 3369 4797 * * * 28 0 * * * * * * 7525 0 0 L 29 3757 5677 * 2643 4274 * 5494 2590 5947 2464 4517 * * 3491 6265 5652 6843 4231 5893 3950 29 0 * * * * * * 7525 0 0 G 30 6282 * 5164 3737 * 346 * * 5863 * * 5454 6489 6469 6523 5750 7455 * * * 30 0 * * * * * * 7574 0 0 M 31 6446 * * 6815 5088 * * 2683 * 818 6565 * * 6489 * * * 3009 3849 6389 31 0 * * * * * * 7574 0 0 I 32 6070 5880 * * 3679 * * 1931 * 1115 * * * * * * * 2590 * * 32 25 5847 * 0 * * * 7574 1624 0 E 33 3877 * 4172 2996 * * 4117 4776 3163 * 6708 4583 3391 3343 3115 3214 5977 4035 * * 33 105 6151 4158 0 * * * 7574 1000 0 P 34 5034 * 6168 5574 6588 5913 * 4560 * * * * 324 * * 5074 5507 6101 * * 34 130 3778 6217 714 1357 330 2292 7498 3866 3144 H 35 2964 * * 3404 6352 6380 4722 3673 4396 4095 6627 6053 4636 3498 3605 3430 4112 2795 * * 35 39 5940 6612 0 * 930 1074 7552 1620 1724 Q 36 4641 6325 4253 2647 * 3680 5887 6272 3231 * * 6633 5322 4781 1507 * 4326 4386 * * 36 106 4375 5459 611 1534 929 1075 7574 3222 1647 P 37 4302 * 3561 4086 * 4350 * 4920 4199 * * 3680 4006 4675 2527 3381 2535 4387 * * 37 42 6858 5641 2807 222 1409 682 7483 1000 2238 Q 38 4259 * 2985 2611 * 2814 5531 * 4232 5690 * 4424 3429 4326 5164 3461 4011 4505 * 7102 38 33 6696 6304 1000 1000 951 1051 7549 1000 2333 A 39 3479 * 5629 3558 * 2453 4861 * 4013 6694 5277 3490 2852 4999 4051 3089 4208 * * * 39 61 4946 6758 294 2439 1417 677 7526 2274 2114 D 40 3366 * 4617 3453 * 1600 6142 5114 5738 5963 * 2682 * 4691 4675 3888 4346 6279 * * 40 52 5548 6142 0 * 1411 680 7540 1712 2172 T 41 5481 * 5141 3772 * 2126 3348 6831 4931 * * 4061 6818 3359 4254 5296 3929 5389 * 2526 41 29 6810 6543 1000 1000 1397 689 7515 1000 2187 W 42 4051 * * * 5499 * 5770 6238 * 6466 * * 5445 6285 1303 5969 * * 2774 1880 42 0 * * * * 0 * 7531 0 2228 L 43 5527 6932 5703 6822 6434 * 4610 5604 4992 2589 5843 6252 * 3658 1572 7032 5508 3503 6485 3378 43 40 7430 5535 0 * * * 7927 1000 0 F 44 * * 5655 * 1710 * 6329 5262 * 2969 6248 * * * 5551 * * 5476 5157 1240 44 0 * * * * 0 * 7902 0 1641 D 45 * * 2455 4685 5396 4428 6426 * 7278 * 5686 6099 5515 6394 3617 2532 3129 5481 * 2111 45 17 * 6423 * * * * 7927 0 0 D 46 3100 * 2572 3069 5518 4060 * 6815 5063 6219 5894 * 3541 3823 3997 3281 3419 5291 * 7927 46 0 * * * * 0 * 7907 0 1000 S 47 2856 * 3195 1908 6662 6575 4701 5178 4320 5320 * 4218 5233 5318 3709 3476 4238 * * * 47 17 * 6402 * * * * 7927 0 0 A 48 2549 5751 1688 3177 5947 6332 5424 * 4904 * * 6291 6603 2989 5567 4192 5130 5904 * 4868 48 31 * 5542 * * 0 * 7911 0 1000 V 49 4731 7021 2987 5740 5685 * * 2536 * 1789 6640 * 6453 4598 6321 6476 * 2133 * 6146 49 0 * * * * 0 * 7901 0 1698 T 50 3001 6909 5044 2568 6959 6404 5716 3221 7782 3648 5904 5067 4165 4977 3697 4447 5350 3211 * 4382 50 0 * * * * * * 7925 0 0 I 51 4442 * 3913 4311 * 6827 5546 5140 4996 3087 5385 5147 6311 5810 1259 5452 5205 6043 4770 5176 51 0 * * * * * * 7925 0 0 V 52 3022 6470 5891 6340 6504 6692 * 3358 * 1392 4960 6483 * * 3321 * 4439 2761 * * 52 0 * * * * * * 7925 0 0 H 53 2702 * 6480 3538 6340 * 4116 5029 3743 2541 4988 4702 * 3556 2234 6031 6532 6924 * * 53 14 * 6740 * * * * 7919 0 0 R 54 * * * 3924 4706 6290 * 5195 2646 2436 5155 6439 * 3583 2047 4258 5974 4568 * 4806 54 0 * * * * 0 * 7921 0 1000 A 55 2941 * * 5982 3702 6678 * 1557 4425 2669 4132 * * 4667 * 6962 * 3223 * 6357 55 41 * 5147 * * * * 7931 0 0 V 56 4740 4318 6244 5070 6714 6337 6373 2129 3664 3172 7598 * * 3417 3744 4707 6542 2593 * 5112 56 87 * 4097 * * 0 * 8368 0 2364 R 57 3449 5352 5123 4663 6056 6911 5549 6358 4074 3931 * 4976 * 6021 1120 5020 4437 6401 * 4725 57 31 * 5536 * * 0 * 7881 0 3301 L 58 5381 7647 6368 4588 3784 6823 * 4288 * 850 4413 * * 4703 4860 6635 5167 4986 5426 5830 58 60 * 4609 * * 0 * 8363 0 2061 R 59 3745 4419 * 5072 6294 6959 3207 5204 4250 2169 4416 5871 * 5194 3276 4296 4385 4714 * 3531 59 82 * 4176 * * 0 * 8339 0 2728 N 60 5072 6320 5121 6868 * 6112 3921 * 2724 6339 * 3812 * 3453 1327 4571 5691 * * 4219 60 71 * 4376 * * 0 * 8342 0 3714 E 61 3975 * 1564 2248 * 3732 6425 * 3752 * * 5807 6356 4257 4197 5643 4327 5653 * * 61 22 * 6035 * * 0 * 8322 0 2973 L 62 3600 6369 * 4809 3400 5208 * 4863 5734 914 4710 * * * 4826 6599 * 4789 * 4507 62 20 6162 * 0 * 0 * 8327 1000 1364 E 63 * * 2909 3681 6699 712 * * 4741 5608 * 4344 * 6001 5531 5362 * * * * 63 0 * * * * * * 8327 0 0 L 64 4940 * * * 2075 * 5407 2857 * 1916 2907 * * * * * 6350 2938 * 5187 64 12 6858 * 3585 126 * * 8348 1000 0 D 65 5821 * 3973 * * 4256 6641 * 5171 * * 2189 2299 5797 6059 1920 3202 * * * 65 0 * * * * * * 8348 0 0 W 66 6583 * 5836 6682 7500 * * 3257 * 789 4302 6379 4258 * 6936 6653 5237 3897 5033 5950 66 12 6889 * 4170 82 * * 8348 1000 0 P 67 2691 * 3418 2017 6409 5425 * 7192 2950 * * 5412 2965 4542 4905 4494 5235 4861 * * 67 0 * * * * * * 8348 0 0 G 68 3501 * 3066 1984 * 1887 * 6053 5235 5775 * 6287 * 3571 * 5166 3867 5975 * * 68 0 * * * * * * 8426 0 0 I 69 3277 * * 6080 * 5872 * 1011 * 3583 4146 * * * * * 5263 2301 * * 69 37 5308 * 789 1247 * * 8341 2158 0 A 70 1857 * 4517 4834 * 4191 5925 6315 2425 * 6610 5909 4822 5303 2301 4559 5301 5884 * * 70 82 4186 * 2640 252 * * 8358 2911 0 V 71 3370 * 4289 3219 6855 6392 * 3912 4967 2114 4071 4204 * 3607 4073 5263 6731 3378 * 6998 71 18 6342 * 1585 585 * * 8316 1000 0 A 72 3955 * 6122 * 5676 * * 2018 5920 2763 4348 6694 * * 5243 3778 6709 1872 * 4319 72 13 6850 * 2807 222 * * 8396 1000 0 L 73 4865 * 4441 5704 5066 * 6290 2822 5827 1235 3892 5315 5706 5739 5057 5225 5747 3872 * * 73 71 4849 6206 2665 247 * * 8788 3173 0 T 74 5200 * 1975 2258 * 4035 4980 5614 6213 4885 * 4154 4677 4437 4136 3634 3835 * * * 74 54 5353 6353 3252 160 * 0 9405 2664 1678 L 75 5152 4604 5727 4004 5599 5198 6537 7986 4741 1491 4082 4200 * 4673 5793 3817 4026 4144 * 4873 75 37 5297 * 2713 239 0 * 9412 2525 2248 L 76 4224 * 4793 3937 4385 * 7140 3937 4449 1901 6224 5609 3906 4794 3696 5440 3824 4077 4697 7353 76 14 6733 * 2322 322 * * 9871 1000 0 D 77 5309 * 1737 2175 6146 4337 6543 6674 4129 * * 4365 5566 3984 3555 5255 4205 6198 * * 77 9 7287 * 4170 82 * * 10065 1000 0 E 78 4419 * 3324 2466 5317 6152 5383 6556 3595 3814 * 5748 4854 3184 2903 4002 4784 4679 * 6633 78 29 5652 * 1585 585 * * 10289 1630 0 N 79 6114 6765 6034 5781 * 4351 5916 2810 4515 2822 4701 5488 3972 4321 3298 5529 4933 2443 * 4828 79 9 7271 * 3000 193 * * 10289 1000 0 A 80 2713 * 2906 2286 * 4052 4991 6747 4229 6979 6919 5245 6512 3312 4528 3683 4070 * 6776 6564 80 25 5837 * 2649 251 * * 10309 2258 0 R 81 2398 * 4428 3495 6018 4627 4735 4315 3710 4054 5843 5748 5565 3466 3031 4936 4232 4684 * * 81 89 4064 * 1729 518 * * 10309 3989 0 L 82 4056 6491 6666 6095 5826 * 6820 3868 5077 1009 3781 5354 6767 6682 5251 4464 4932 4007 * * 82 15 6596 * 1585 585 * * 10310 1000 0 T 83 5171 5008 4690 2675 * 5581 5802 4937 4694 3793 5699 4390 6042 2890 2050 4779 4116 6514 * * 83 55 5236 6522 2134 373 * * 10310 2345 0 R 84 2195 6544 4552 3028 * 5361 5094 * 4471 5086 6881 4753 5562 2729 2881 3962 4245 * * 7095 84 12 * 6949 * * 0 * 10279 0 1000 E 85 3726 * 4215 2072 5741 * 3391 * 3831 4790 4718 * * 2323 3292 5580 4931 5738 * * 85 0 * * * * 0 * 10066 0 1000 N 86 5602 5626 * 3932 * * 5310 2364 4636 1859 3947 4787 * 5883 4168 4930 6305 2844 * * 86 8 7535 * 2000 415 * * 10082 1000 0 R 87 3601 * 3784 2634 * 6558 4096 6351 3592 4162 6507 5867 * 2492 2619 5979 4258 5209 * * 87 0 * * * * * * 10088 0 0 L 88 2887 * 3567 2579 6668 5146 6382 5028 4298 3405 5606 5620 * 3818 2870 3942 6760 3959 * * 88 0 * * * * * * 10095 0 0 L 89 7095 7122 * 4440 5129 * 6368 3339 * 752 3777 7371 * 4781 4933 6485 6177 5286 * 7031 89 46 4988 * 962 1039 * * 10095 2667 0 Q 90 4996 * 4089 3006 6789 5104 * 4847 4016 4147 6210 4764 * 2504 2179 3857 4524 4866 * * 90 0 * * * * * * 10087 0 0 Q 91 2778 6057 3329 3315 * 6566 6353 6333 3050 5417 6161 5160 * 2814 2722 4152 4862 4899 * * 91 10 7189 * 3322 152 * * 9773 1000 0 R 92 5014 * 5557 2443 6841 6277 5961 * 2909 5337 * * 5967 2150 1867 6405 5681 5533 * * 92 0 * * * * * * 9779 0 0 L 93 5923 6023 * * 5764 * 5349 1786 6411 1256 4456 * * * 4254 * 5573 3545 * * 93 9 * 7389 * * * * 9670 0 0 A 94 2724 * 3487 2650 5728 4535 6333 * 3152 * * 4038 6020 3998 2493 4537 5605 4920 * * 94 0 * * * * 0 * 9705 0 1000 R 95 5072 * 4681 3017 * * * * 3183 * * 5610 * 2679 1016 * 5230 * * * 95 0 * * * * * * 9180 0 0 F 96 5800 * * 4050 4091 * 5095 5092 5576 929 4875 * 5359 4154 5677 * 4775 4198 * 4920 96 0 * * * * * * 8772 0 0 L 97 4923 * 4744 2821 * * * 2739 * 2581 2549 * * 3260 3969 * 4964 3321 * * 97 0 * * * * * * 8443 0 0 A 98 1108 * 4148 1531 * * * * * * * * * 3691 5347 * 4974 * * * 98 0 * * * * * * 8081 0 0 H 99 * * * 3812 * * 930 * * * * 3412 * * 3885 4194 * * * 2415 99 0 * * * * * * 6239 0 0 G 100 * * * * * 0 * * * * * * * * * * * * * * 100 0 * * 0 * * * 3255 0 0 //