HHsearch 1.5 NAME c3u5gf_ FAM FILE c3u5gf_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3u5gf_.a3m DATE Thu Jan 10 02:24:42 2013 LENG 76 match states, 76 columns in multiple alignment FILT 34 out of 38 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.9 EVD 0.3852 -1.5765 SEQ >ss_dssp CCSSSCCCCCCCSCCCCCCCCCCCSCCCCSCBCSSSCBCCSSCCCCSTTTSSSCCEEECSSCEEECSSSSCCBCCC >sa_dssp EEEDEDEEEDEDEEEEEEEEEEEDEEDEEDEEEEEDEEEDDDECBEDEECEEECCBCEDEEDCCBDECEDDEEEEE >ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCCCCCCCCCEEEEEEEC >ss_conf 9642122111111111111111112355688868973876000088976666469603644221456303688739 >Consensus xxxxxxxxxxxxxxxxxxxxxxxxxVLkyYKVDxnGKVxRlRkeCPnxxCGxGvFMAxHxDRxyCGKChltYkxna >c3u5gf_ XXXXXXXXXXXXXXXXXXXXXXXXXVLSYYKVDAEGKVTKLRRECSNPTCGAGVFLANHKDRLYCGKCHSVYKVNA >UniRef50_Q6A1P6(102-150:177) Putative uncharacterized protein n=1 Tax=Euplotes vannus RepID=Q6A1P6_EUPVA E=7e-12 s/c=1.46 id=51% cov=64% -------------------------VLSYFEVDKNGKIEKLKQESPEQ---AGCYLADHKDRMHCGKTgYMFYKMTA >UniRef50_Q98S99(70-112:115) 40S ribosomal protein S27A n=1 Tax=Guillardia theta RepID=Q98S99_GUITH E=9e-07 s/c=1.27 id=46% cov=51% -------------------------VLSYYHLDQN-KITRILKESPDS---PGCFMANHFNRITCGK--------- >UniRef50_UPI0000DC1016(99-140:145) UPI0000DC1016 related cluster n=1 Tax=Rattus norvegicus RepID=UPI0000DC1016 E=6e-05 s/c=1.16 id=42% cov=57% -------------------------VLKYYEVDKNGKIKNVLLM--------NVVMGSHFDRHYYGKCCPTYWFN- >UniRef50_D2EF30(11-53:61) Ribosomal protein S27a n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EF30_9EURY E=9e-05 s/c=1.12 id=49% cov=49% -----------------------------YKIEGS-TITKVNHTC--PKCGEGTFLAEHNNRLTCGRC-------- >UniRef50_UPI00006CAF49(98-145:189) Ribosomal protein S27a containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CAF49 E=9e-15 s/c=1.69 id=47% cov=64% --------------------------LAFYKLENNGKVSLQQKGCP--KCGPGIFMAKHYDRHYCGKCHLTLKIDA >UniRef50_Q8IM64(102-145:149) 40S ribosomal protein S31/UBI, putative n=7 Tax=Plasmodium RepID=Q8IM64_PLAF7 E=3e-13 s/c=1.73 id=53% cov=57% -------------------------VLKFYKVGDDGKVFRLKRQCDN--CAPGTLMASHFDRDYCGRCH------- >UniRef50_A6US53(20-64:71) 30S ribosomal protein S27ae n=13 Tax=Euryarchaeota RepID=RS27A_METVS E=8e-09 s/c=1.37 id=51% cov=59% ----------------------------YYKVEGN-SVTRTKKACP--KCGAGVFMAEHLNRYACGKCGfLEYKKN- >UniRef50_A8BNY1(95-134:137) Putative uncharacterized protein n=2 Tax=Giardia intestinalis RepID=A8BNY1_GIALA E=2e-07 s/c=1.42 id=40% cov=53% --------------------------LKYYTIKGD-TAEPTREYCPN--CGPGIRIARHADRCHCGRC-------- >UniRef50_D1HQI3(77-110:113) Whole genome shotgun sequence of line PN40024, scaffold_144.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1HQI3_VITVI E=1e-06 s/c=1.61 id=45% cov=43% ----------------------------------------LRRDCLDSECCVGTFMASHLDRHYYAKCSLAY---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * X 1 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 1 * * * * * * * 0 0 0 X 2 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 2 * * * * * * * 0 0 0 X 3 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 3 * * * * * * * 0 0 0 X 4 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 4 * * * * * * * 0 0 0 X 5 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 5 * * * * * * * 0 0 0 X 6 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 6 * * * * * * * 0 0 0 X 7 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 7 * * * * * * * 0 0 0 X 8 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 8 * * * * * * * 0 0 0 X 9 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 9 * * * * * * * 0 0 0 X 10 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 10 * * * * * * * 0 0 0 X 11 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 11 * * * * * * * 0 0 0 X 12 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 12 * * * * * * * 0 0 0 X 13 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 13 * * * * * * * 0 0 0 X 14 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 14 * * * * * * * 0 0 0 X 15 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 15 * * * * * * * 0 0 0 X 16 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 16 * * * * * * * 0 0 0 X 17 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 17 * * * * * * * 0 0 0 X 18 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 18 * * * * * * * 0 0 0 X 19 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 19 * * * * * * * 0 0 0 X 20 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 20 * * * * * * * 0 0 0 X 21 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 21 * * * * * * * 0 0 0 X 22 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 22 * * * * * * * 0 0 0 X 23 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 23 * * * * * * * 0 0 0 X 24 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 24 * * * * * * * 0 0 0 X 25 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 25 * * * * * * * 0 0 0 V 26 * * * * * * * * * * * * * * * * * 0 * * 26 0 * * * * * * 2508 0 0 L 27 * * * * * * * * * 182 * * * * * 4159 * * * 4006 27 0 * * * * * * 2866 0 0 S 28 3058 * * * * * * * 1061 * * 4530 * 4746 3149 2816 3932 * * * 28 0 * * * * * * 2866 0 0 Y 29 * * * * 1985 * 2515 * * * * * * * * * * * * 805 29 0 * * * * * * 2932 0 0 Y 30 * * * * 2954 * 3953 * * * * * * * * * * * * 310 30 0 * * * * * * 2994 0 0 K 31 * * * 2991 * * 4633 * 725 * * 4259 * * 4595 4963 3274 * * * 31 0 * * * * * * 3043 0 0 V 32 * * * * * * * 2279 * 3612 * * * * * * * 490 * * 32 61 4598 * 2000 415 * * 3043 1000 0 D 33 * * 619 2654 * 4479 * * 3424 * * * * * * * 4259 * * * 33 106 * 3822 * * * * 3043 0 0 A 34 3686 * 3446 2194 * 1542 * * 3319 * * 4488 * 4437 * 3686 * * * * 34 66 4478 * 0 * 0 * 3008 1000 1339 E 35 4561 * 1626 4196 * * 4322 * * * 4732 1520 * 4664 * 3274 * * * * 35 428 * 1962 * * * * 3102 0 0 G 36 * * * * 4306 75 * * * * * * * * * * * * * * 36 0 * * * * 0 * 2827 0 2356 K 37 * * * * * * * * 281 * * * * * * 3500 3495 * * * 37 0 * * * * * * 3100 0 0 V 38 3431 * * * * * * 1424 * * * * * * * * 4916 995 * * 38 73 * 4339 * * * * 3100 0 0 T 39 * * * 1816 4713 * 4337 4512 3560 * * * * 5302 * 2761 2308 3001 * * 39 0 * * * * 0 * 3058 0 1000 K 40 4891 * * * * * 4339 * 2720 5082 * 4302 3559 * 831 * 4727 * * * 40 0 * * * * * * 3100 0 0 L 41 * * * * * * * 4009 3822 1026 * * * 3473 4172 4745 3092 3720 * * 41 0 * * * * * * 3127 0 0 R 42 * 4172 * * * 5068 4745 * 2702 3310 * 4198 * 5106 891 * * * * * 42 0 * * * * * * 3127 0 0 R 43 * * 4687 4195 * * 3928 * 1464 3670 * * * 3930 1843 * * * 4172 * 43 0 * * * * * * 3127 0 0 E 44 4031 4642 3792 1204 4611 5106 * 4943 * * 3670 * * 4803 * 5068 4204 4752 * 4195 44 63 * 4549 * * * * 3127 0 0 C 45 * 236 * * * * * * * * * * * * 4094 3433 * * * * 45 161 * 3242 * * * 0 3025 0 1000 S 46 4416 * 4653 5019 * * * * * 4313 * * 731 4861 * 3267 3448 * * * 46 287 * 2469 * * * 0 2968 0 1943 N 47 * * 3430 4348 * 3290 4459 * * * * 1227 * 3644 4278 2721 * * * * 47 444 * 1915 * * 1436 666 2861 0 2182 P 48 4342 * 2871 2630 * * * * 4036 * * * 1395 4081 * 2716 * * * * 48 218 * 2836 * * 1204 821 2780 0 2534 T 49 * * * 1959 * * * * 2269 * * 4312 * 4268 2047 3271 4229 4864 * * 49 0 * * * * 1422 674 2648 0 2535 C 50 * 0 * * * * * * * * * * * * * * * * * * 50 54 4773 * 0 * 1631 562 2606 1000 2115 G 51 4796 2595 4723 * * 449 * * * * * * * * * 5154 * * * * 51 0 * * * * 394 2065 2929 0 1813 A 52 1531 * 5104 4327 * 5099 * * 3064 * * 4568 2266 * 4760 * * 2842 * * 52 0 * * * * 0 * 3125 0 1000 G 53 4631 * * * * 124 * * * * * 4566 * * * * * * * * 53 93 * 3996 * * * * 3168 0 0 V 54 4920 2479 * * 5249 * * 3645 * * * * * * * 5147 2421 1100 * * 54 0 * * * * * 0 2988 0 1000 F 55 * * * * 520 * * * * 3889 * * * * 4260 * * 3549 * 3356 55 0 * * * * * 0 2988 0 1000 L 56 * * * * * * * 4260 * 2056 500 * * * * * * * * * 56 0 * * * * 0 * 2988 0 1000 A 57 277 * * * * 2909 * * * * * * * * * 4595 * * * * 57 0 * * * * * * 3168 0 0 N 58 4803 * 4047 2324 * 3996 * * 3171 * * 3658 * 3074 4286 2332 4677 4532 * * 58 0 * * * * * * 3168 0 0 H 59 * * * * * * 64 * * * 4532 * * * * * * * * * 59 0 * * * * * * 3168 0 0 K 60 3201 * * 3334 2132 5339 4913 * 1721 3539 * 3959 * * * 5247 * * * 5261 60 0 * * * * * * 3168 0 0 D 61 * * 252 * * * * * * * * 2643 * * * * * * * * 61 79 4222 * 0 * * * 3168 1114 0 R 62 * * * * * * * * * * 4037 * * * 91 * * * * * 62 0 * * * * * * 3047 0 0 L 63 * 4297 4683 5903 5150 * 1561 5252 5346 2578 3838 4611 * 5157 4478 * 4810 * 5569 3888 63 0 * * * * * * 3047 0 0 Y 64 3888 * * * * * 3272 * * * * * * * * 3044 2457 * * 928 64 0 * * * * * * 3047 0 0 C 65 * 139 * * * * * * * * * * * * * * * * * 3445 65 0 * * * * * * 3047 0 0 G 66 4420 * * * * 129 * * * * * * * * * 4676 * * * * 66 0 * * * * * * 3047 0 0 K 67 * * * * * * * * 490 * * 4159 * * 2108 * * * * * 67 0 * * * * * * 2966 0 0 C 68 * 103 * * * * * * * * * * * * * * 3856 * * * 68 228 2774 * 0 * * * 2953 1361 0 H 69 * 3228 * * * 3240 1002 * * * * * * 4147 * 4151 4949 * * 2806 69 94 3985 * 0 * * * 2707 1000 0 S 70 * * 3940 * * * * * * 1053 3186 * 3519 * * 3124 2825 * * * 70 0 * * * * * * 2670 0 0 V 71 3299 * * 2812 3097 * * * * * * * * * * * 776 4186 * * 71 0 * * * * * * 2571 0 0 Y 72 * * * * * * * * * 2669 * * * * * * * * * 247 72 0 * * * * * * 2538 0 0 K 73 * 3500 * * * * * * 603 * * * * * * * * 3007 2959 * 73 0 * * * * * * 2275 0 0 V 74 * * * * 1984 * * 2737 2856 * 2518 * * * * * * 1814 * * 74 0 * * * * * * 2244 0 0 N 75 * * 1752 * * * * * * * * 920 * * * * 2518 * * * 75 0 * * * * * * 2244 0 0 A 76 0 * * * * * * * * * * * * * * * * * * * 76 0 * * 0 * * * 1736 0 0 //