HHsearch 1.5 NAME c3u1iA_ FAM FILE c3u1iA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3u1iA_.a3m DATE Wed Jan 9 15:22:55 2013 LENG 39 match states, 39 columns in multiple alignment FILT 2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.3 EVD 0.4817 3.1522 SEQ >ss_dssp CCCCCCCCCCCCCTTCCCCCCCCCCCEEECTTSCEEECC >sa_dssp EEEEEEEEEEEEEEEDEEEEEEEEEEDDECEEEDEDEEE >ss_pred CCCHHHCCCCCHHHHHHHCCCCCEEEEEECCCCEEEECC >ss_conf 963011003440334431177513899980686277229 >Consensus dlsxekaaxvsweeeaexsgxshnxxixvxddgtmxikd >c3u1iA_ DLTVEKAADVTWEEEAEQTGVSHNLMITVDDDGTMRIKD >UniRef50_P33478(1394-1432:3396) Methyltransferase/RNA-directed RNA polymerase NS5 n=6644 Tax=root RepID=POLG_DEN1S E=1e-13 s/c=1.99 id=65% cov=103% DLSLEKAAEVSWEEEAEHSGASHNILVEVQDDGTMKIKD # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * D 1 * * 0 * * * * * * * * * * * * * * * * * 1 0 * * * * * * 1260 0 0 L 2 * * * * * * * * * 0 * * * * * * * * * * 2 0 * * * * * * 1260 0 0 T 3 * * * * * * * * * * * * * * * 1000 1000 * * * 3 0 * * * * * * 1260 0 0 V 4 * * * * * * * * * 1000 * * * * * * * 1000 * * 4 0 * * * * * * 1260 0 0 E 5 * * * 0 * * * * * * * * * * * * * * * * 5 0 * * * * * * 1260 0 0 K 6 * * * * * * * * 0 * * * * * * * * * * * 6 0 * * * * * * 1260 0 0 A 7 0 * * * * * * * * * * * * * * * * * * * 7 0 * * * * * * 1260 0 0 A 8 0 * * * * * * * * * * * * * * * * * * * 8 0 * * * * * * 1260 0 0 D 9 * * 1000 1000 * * * * * * * * * * * * * * * * 9 0 * * * * * * 1260 0 0 V 10 * * * * * * * * * * * * * * * * * 0 * * 10 0 * * * * * * 1260 0 0 T 11 * * * * * * * * * * * * * * * 1000 1000 * * * 11 0 * * * * * * 1260 0 0 W 12 * * * * * * * * * * * * * * * * * * 0 * 12 0 * * * * * * 1260 0 0 E 13 * * * 0 * * * * * * * * * * * * * * * * 13 0 * * * * * * 1260 0 0 E 14 * * * 0 * * * * * * * * * * * * * * * * 14 0 * * * * * * 1260 0 0 E 15 * * * 0 * * * * * * * * * * * * * * * * 15 0 * * * * * * 1260 0 0 A 16 0 * * * * * * * * * * * * * * * * * * * 16 0 * * * * * * 1260 0 0 E 17 * * * 0 * * * * * * * * * * * * * * * * 17 0 * * * * * * 1260 0 0 Q 18 * * * * * * 1000 * * * * * * 1000 * * * * * * 18 0 * * * * * * 1260 0 0 T 19 * * * * * * * * * * * * * * * 1000 1000 * * * 19 0 * * * * * * 1260 0 0 G 20 * * * * * 0 * * * * * * * * * * * * * * 20 0 * * * * * * 1260 0 0 V 21 1000 * * * * * * * * * * * * * * * * 1000 * * 21 0 * * * * * * 1260 0 0 S 22 * * * * * * * * * * * * * * * 0 * * * * 22 0 * * * * * * 1260 0 0 H 23 * * * * * * 0 * * * * * * * * * * * * * 23 0 * * * * * * 1260 0 0 N 24 * * * * * * * * * * * 0 * * * * * * * * 24 0 * * * * * * 1260 0 0 L 25 * * * * * * * 1000 * 1000 * * * * * * * * * * 25 0 * * * * * * 1260 0 0 M 26 * * * * * * * * * 1000 1000 * * * * * * * * * 26 0 * * * * * * 1260 0 0 I 27 * * * * * * * 1000 * * * * * * * * * 1000 * * 27 0 * * * * * * 1260 0 0 T 28 * * * 1000 * * * * * * * * * * * * 1000 * * * 28 0 * * * * * * 1260 0 0 V 29 * * * * * * * * * * * * * * * * * 0 * * 29 0 * * * * * * 1260 0 0 D 30 * * 1000 * * * * * * * * * * 1000 * * * * * * 30 0 * * * * * * 1260 0 0 D 31 * * 0 * * * * * * * * * * * * * * * * * 31 0 * * * * * * 1260 0 0 D 32 * * 0 * * * * * * * * * * * * * * * * * 32 0 * * * * * * 1260 0 0 G 33 * * * * * 0 * * * * * * * * * * * * * * 33 0 * * * * * * 1260 0 0 T 34 * * * * * * * * * * * * * * * * 0 * * * 34 0 * * * * * * 1260 0 0 M 35 * * * * * * * * * * 0 * * * * * * * * * 35 0 * * * * * * 1260 0 0 R 36 * * * * * * * * 1000 * * * * * 1000 * * * * * 36 0 * * * * * * 1260 0 0 I 37 * * * * * * * 0 * * * * * * * * * * * * 37 0 * * * * * * 1260 0 0 K 38 * * * * * * * * 0 * * * * * * * * * * * 38 0 * * * * * * 1260 0 0 D 39 * * 0 * * * * * * * * * * * * * * * * * 39 0 * * 0 * * * 1260 0 0 //