HHsearch 1.5 NAME c3toeB_ FAM FILE c3toeB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3toeB_.a3m DATE Sat Apr 28 13:24:33 2012 LENG 86 match states, 86 columns in multiple alignment FILT 51 out of 55 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.6 EVD 0.4560 1.2986 SEQ >ss_dssp CEEECCSSCHHHHHHHHHHHHHTSCCEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEEEECTTSCEEEEEEEEEEEEC >sa_dssp EDBEBCEEECDDBAEDABECAEEEDDDACADBDDEBCDDADDABCCADEEDBEEBDCDDEDEDDDEDECEEEDEDECEBBCBCACD >ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEC >ss_conf 98998064227899999998418995899999736213565788999984059816899982037887377846430089999859 >Consensus nxixigxKpixnYVxxaxxllxegxxxVviKAxGraIsKAVxvaEilkxRxxxxxxixxixIxsexxxxxxgxxrxVsxIxIxLxk >c3toeB_ NVVYIGNKPVMNYVLAVVTQMNGGTSEVILKARGIAISRAVDVAEIVRNRFIPDIQIENIDICTEEIIGNEGTATNVSAIEIQLRK >UniRef50_A9A323(7-92:95) DNA/RNA-binding protein Alba n=2 Tax=Thaumarchaeota RepID=ALBA_NITMS E=5e-07 s/c=0.65 id=38% cov=100% DTIFIGKKPLMAYVTSTLIQL-ANIPSVNIKARGLSIGRAVDVAQIIaRKTENAGYSIGEIKIGSESLESQDGRTRNVSTIEIEVKR >UniRef50_D1HEP6(276-371:514) Whole genome shotgun sequence of line PN40024, scaffold_1.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1HEP6_VITVI E=3e-19 s/c=1.00 id=30% cov=101% NEIRITSQGRMrSYITYAMSLLQEkGSNEIVFKAMGRAINKTVTIVELIKRRivgLHQNTSIGSTDITDTWEPLEEGllpleTTRHVSMITITLSK >UniRef50_B7G8J5(40-123:167) Putative uncharacterized protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G8J5_PHATR E=3e-13 s/c=0.91 id=29% cov=90% -------KP-RNYISYAMNLFSDGSPTIVLKAMGKAINKAVTIAEILKRKMflhqinsLSSVEMIDVYEPVEEGLDLVTNRRFVSCMKIIL-- >UniRef50_Q971T6(7-88:90) DNA/RNA-binding protein Alba 2 n=12 Tax=Sulfolobus RepID=ALBA2_SULTO E=9e-11 s/c=0.83 id=35% cov=95% NEILISRtKRVEDYVLDVIVMFNQGYDEVELKGVGNSIYKAVEVYNQLKDRLGDGIILEKADIGSEVKD-----RRRISYISIKLKR >UniRef50_C5LKD4(21-108:221) Putative uncharacterized protein n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5LKD4_9ALVE E=6e-08 s/c=0.66 id=28% cov=76% ---------LTPYVRYAIRLLQEdGRDTIKIVASGQAISKAVNVAETLKRRYRGLYQLTELSavELQETLDRNDGR------------- >UniRef50_Q4UBC1(169-248:302) Putative uncharacterized protein n=1 Tax=Theileria annulata RepID=Q4UBC1_THEAN E=2e-06 s/c=0.67 id=28% cov=63% ---------VSNYVTYAKKLLSNGIPVITIRGTGRAMSNVVETAEILRHMINGLHQVTTVDT------------------------ >UniRef50_A1RZM9(5-86:95) Nucleoid protein Alba n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RZM9_THEPD E=5e-10 s/c=0.80 id=34% cov=97% -VLLVGEKPESAYTLELMTMLGKGAPRVVVRAVGRNISKAVYVTEGVRRLTGDKIAYGKIRIYSTEV-GEVKEEKSVPVIEIEV-- >UniRef50_A0E244(20-122:325) Chromosome undetermined scaffold_74, whole genome shotgun sequence n=5 Tax=Paramecium tetraurelia RepID=A0E244_PARTE E=1e-09 s/c=0.63 id=31% cov=101% NVIRVANKAqLSTQVRKALWLLQGTRKEeqppildtIYITAIENAISKAVIIAEVVRRRvagLYQINKIQSVQISEEYEPLEEGLvkvsvTKNLASLQIK LTK >UniRef50_UPI0000ECAF9A(33-125:164) Ribonuclease P protein subunit p25 (EC 3.1.26.5) (RNase P protein subunit p25). n=2 Tax=Gallus gallus RepID=UPI0000ECAF9A E=1e-06 s/c=0.58 id=22% cov=94% -----GSK-IRNLMSFAMAQMElKGSRQIVFSGCGRAVTKTITCVEIMKRKLGGLHQVTKVRYKTllEVWENQDPLpggaaqnltvHKNVPSICILLSR # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * 2636 * * * 4424 * * * * 335 * * * * * * * * 1 0 * * * * * * 3322 0 0 V 2 * * * 2738 * * * 2159 * * * * * * * 4544 2420 1335 * * 2 0 * * * * * * 3789 0 0 V 3 * * * * * * * 631 * 3144 * * * * * * * 2053 * * 3 0 * * * * * * 3789 0 0 Y 4 * * 4261 * 2167 * * * * 2192 * 4355 * * 2477 * * 3488 * 2405 4 0 * * * * * * 3789 0 0 I 5 * * * * * * * 986 * * * * * * * * * 1014 * * 5 0 * * * * * * 3789 0 0 G 6 3905 * * * * 403 * * * * * * * * 4423 4576 3503 * * * 6 0 * * * * * * 4011 0 0 N 7 * * 4536 4185 * * * 4688 1543 * * 2269 * 5581 3905 2153 * * * * 7 55 4733 * 0 * * * 4086 1000 0 K 8 * * * * * * * * 130 * * * * 4514 4563 * * * * * 8 151 * 3329 * * * * 4165 0 0 P 9 3974 * * * * 3156 * * * * * * 344 * 4775 * * * * * 9 230 3395 4253 0 * 0 * 3986 1447 1308 V 10 4990 * * 4407 * * * 1851 * 2344 * * * * 5182 * 3499 1594 * * 10 0 * * * * 0 * 4371 0 1000 M 11 * * 5025 3525 * * * 4253 * 5736 1621 * * * 2033 2664 3575 * * * 11 39 5234 * 0 * * * 4543 1000 0 N 12 3677 * 3038 3949 * * * * * * * 963 5284 * * 2921 3949 * * * 12 0 * * * * * * 4472 0 0 Y 13 * * * * * * * * * 3735 * * * 3919 * * * * * 220 13 0 * * * * * * 4617 0 0 V 14 * * * * * * * 2088 * * 4537 * * * * * 4718 549 * * 14 0 * * * * * * 4617 0 0 L 15 * * * * 5166 4965 * 5342 * 1923 3789 3692 * * 3872 2275 2441 5152 * 6071 15 0 * * * * * * 4617 0 0 A 16 1659 * 4326 3412 4537 * * * 4213 * * 4977 * * * 4557 * * * 1442 16 0 * * * * * * 4617 0 0 V 17 892 * * * * 3785 * 4169 * 4718 * * * * * * 2692 2833 * * 17 0 * * * * * * 4617 0 0 V 18 5027 * * * * * * 2260 5394 2132 2330 4606 * * 5716 * 3488 2639 * * 18 0 * * * * * * 4638 0 0 T 19 3634 * * * * 4606 * 3861 3454 3775 5358 4293 * * 5112 3123 1642 3873 4734 * 19 46 5001 * 0 * * * 4638 1000 0 Q 20 4175 * * * * * 5141 5027 * 1139 3078 * * 1946 * 4222 * * * * 20 0 * * * * * * 4638 0 0 M 21 * * * * 1336 * * 4109 * 1041 4055 * * * * * * * * * 21 93 * 4004 * * * * 4638 0 0 N 22 4710 * 4509 3985 * 3969 * * * * * 1403 * 2255 4745 2591 * * * * 22 216 3543 4230 0 * 0 * 4530 2107 2024 G 23 3587 * 3510 1120 * 3482 * * 3603 * * 4240 * 4005 5371 4115 * * * * 23 184 3065 * 0 * 0 * 4799 1967 1369 G 24 * * 5079 4428 * 761 * * 4145 * * 4266 3622 * 5863 4706 3496 * * * 24 61 4592 * 1532 612 * * 4820 1639 0 T 25 2519 * * 5793 4822 * 4122 3307 5079 5264 * 3772 * 5325 3761 2466 5838 2885 * 4258 25 53 4782 * 0 * * * 4820 1586 0 S 26 * * 2045 3245 * 5376 * * 2044 * * 4304 2505 5641 4148 4258 5059 * * * 26 56 4724 * 0 * * * 4820 1220 0 E 27 * 5703 4350 1486 * * * 5264 3768 * * 5346 * 2919 3662 3806 2989 4567 * * 27 43 5103 * 3000 193 * * 4820 1000 0 V 28 * * * * * * * 1217 * 5245 * * * * * * * 880 * * 28 0 * * * * * * 4820 0 0 I 29 5188 * * 3819 * * * 2588 3707 5325 * 5695 * * * 6002 2879 1205 * 5103 29 0 * * * * * * 4820 0 0 L 30 * * * * 3071 * * 1312 * 1387 * * * * * * * 3878 5164 * 30 0 * * * * * * 4820 0 0 K 31 5264 * * * * * * * 556 * * * * * 3796 2843 5103 4225 * * 31 0 * * * * * * 4820 0 0 A 32 520 * * * * 1724 * * * * * * * * * * * * * * 32 0 * * * * * * 4820 0 0 R 33 * 5132 * * * * * 4274 * * 2023 * * 5656 1431 4251 3370 3496 * 4466 33 0 * * * * * * 4820 0 0 G 34 * * 5164 5103 * 85 * * * * * * * * * * * * * * 34 33 5468 * 0 * * * 4820 1000 0 I 35 4447 * 5346 * * * * 5838 2125 5695 5703 2866 5245 3780 1391 5224 * * * * 35 0 * * * * * * 4820 0 0 A 36 667 * * 5563 5346 5376 * * * * 5468 3422 * * 4440 3189 * * * 5115 36 0 * * * * * * 4820 0 0 I 37 * * * * * * * 264 * * 4567 * * * * * * 2997 * * 37 0 * * * * * * 4820 0 0 S 38 * 5852 5563 * * 3876 5483 5424 * * * 3527 * 4822 * 783 3016 * * 5583 38 0 * * * * * * 4820 0 0 R 39 * * * * * * * * 739 * * 3611 * 4440 2092 6433 5224 * * * 39 0 * * * * * * 4820 0 0 A 40 480 * * * * * * * * * * * * * * 5028 2330 4217 * * 40 0 * * * * * * 4820 0 0 V 41 * * * * * * * 2737 * * * * * * * * * 234 * * 41 0 * * * * * * 4820 0 0 D 42 4832 * 1374 3987 5468 * * 5103 * * 4868 4094 * * * 4774 1855 5115 * 5068 42 0 * * * * * * 4820 0 0 V 43 * 3245 * * * * * 2237 * 4159 * * * * * * 2478 1162 * * 43 0 * * * * * * 4820 0 0 A 44 830 * * 5424 5115 * * * * * * * * * * 3261 5068 2851 * 3148 44 0 * * * * * * 4820 0 0 E 45 * * * 467 * * * * * * * 3095 * 3167 * * * 5412 5346 * 45 0 * * * * * * 4820 0 0 I 46 4493 * * * * 4544 * 1040 * 3984 3002 * * 5583 5115 * 5343 2607 * * 46 0 * * * * * * 4820 0 0 V 47 5188 * * * * * * 1992 * 1286 4225 * * * * * 4313 2270 * * 47 57 4699 * 0 * * * 4820 1084 0 R 48 5656 * * * * * * * 870 5188 5224 * * * 1706 * * 3787 * * 48 0 * * * * * * 4820 0 0 N 49 * * 3729 4127 * * 3685 * 3308 4310 * 2246 * * 1332 5050 * * * * 49 20 6148 * 1585 585 * * 4659 1000 0 R 50 * * * * * * * * 2155 4408 5291 * * * 588 * 4727 * * * 50 284 2485 * 1585 585 * * 4659 2211 0 F 51 * * * 4722 1976 * * 3965 * 1518 3252 * * * * * 5071 3136 * 4427 51 149 3353 * 2665 248 * * 4659 2032 0 I 52 5255 * 5486 5056 5304 2305 2410 3622 5107 2454 5269 3458 * 5550 5562 * * 5505 * 4996 52 0 * * * * * * 4659 0 0 P 53 4004 * 3324 3711 * 2632 * * 4515 * 5982 4109 3002 2187 * 3290 4800 * * * 53 71 4388 * 0 * * * 4659 1202 0 D 54 * * 2838 5718 * 2269 * 2729 5071 2632 * 3406 * * * 2721 5056 5990 * * 54 109 3775 * 0 * * * 4659 1775 0 I 55 * * * * * * 2563 2265 * 3335 * 4996 * 5584 * * 2508 2405 * 3227 55 0 * * * * * * 4659 0 0 Q 56 4151 * 5353 1910 * * * 5563 2894 * * 5933 * 2080 4004 3536 5146 3884 * * 56 0 * * * * * * 4659 0 0 I 57 * 5179 * * * * * 1134 5353 2730 5230 * * * * * 3874 2205 * 5071 57 0 * * * * * * 4659 0 0 E 58 * * 5068 3332 * 2456 * 5230 3512 * * * * 4231 5549 2746 2400 2632 * * 58 16 6477 * 1585 585 * * 4659 1000 0 N 59 5549 * 1891 3594 * * * * 2374 * * 3034 * * 4647 2194 4239 * * * 59 0 * * * * * * 4659 0 0 I 60 4753 * * * * * * 1293 * 3783 * * * 4866 * * 3488 1479 * * 60 121 3638 * 1000 1000 * * 4659 1706 0 D 61 * * 2565 3140 5353 4268 * * 2542 * * 5811 * 4032 2671 3136 5512 5179 * 3831 61 64 4533 * 1285 762 * * 4659 1440 0 I 62 * * * 3451 * * * 532 * 4373 * * * * * * 3067 5549 * 5159 62 0 * * * * * * 4659 0 0 C 63 * 5641 4825 6193 * 1683 5448 * 5106 4376 * 5941 3809 * * 3056 2899 2980 * 4300 63 0 * * * * * * 4616 0 0 T 64 * * 2419 4024 * * * * 5570 5427 * * * 4384 * 1514 1911 5210 * 5941 64 43 5106 * 1000 1000 * * 4616 1000 0 E 65 * * 3732 638 * * * * * * 5108 * * 3468 * * 3647 3592 * * 65 44 5062 * 0 * * * 4616 1000 0 E 66 * * * 1783 5152 * * 5499 4120 * 5284 * * * 5092 3220 5539 2980 2721 2841 66 32 * 5503 * * * * 4616 0 0 I 67 * * * 2062 * 3793 * 3771 4247 2026 5224 * * * * 5009 * 2525 3553 * 67 145 * 3383 * * * 0 4608 0 1000 I 68 3833 * 2818 2711 * * * 4265 4581 4182 5469 * 1817 5007 4801 4928 4305 5083 * * 68 155 * 3297 * * 1626 565 4464 0 2031 G 69 * * 2788 * * 2907 * 4441 3609 2759 * 4057 * 4922 5168 2041 3603 * * * 69 0 * * * * * 0 4332 0 2187 N 70 5490 * 4174 1347 * * * * 3380 5034 4867 3684 * 2066 5162 * * 5386 * * 70 0 * * * * 1016 984 4332 0 2187 E 71 * * 2159 1569 * 3255 * 5344 4938 * * 5181 * 6145 3335 * 4290 3555 * * 71 31 * 5557 * * * 0 4485 0 1727 G 72 * * * 5330 * 435 * * 3956 * * 5037 4058 * * 5100 4284 * * * 72 314 2352 * 2322 322 2019 409 4486 1984 2038 T 73 * * 5868 4287 * * * * 2170 2873 5791 5166 * 3764 1827 5215 2790 * * * 73 290 2458 * 2742 234 0 * 4559 2642 1839 A 74 5612 * * 2882 * 4964 5088 5003 2358 * 3663 * * 3782 3323 4540 1935 * * * 74 81 5147 5258 1585 585 * * 4595 1000 0 T 75 5586 * * * * * * 4150 2109 5429 * * * * 713 5482 5559 6152 * * 75 79 * 4226 * * 0 * 4574 0 1000 N 76 * * 5134 * 5154 * 2689 * 3474 * * 1564 3853 4366 3573 4915 2996 * * * 76 0 * * * * 1000 1000 4555 0 1396 V 77 * * * * * * * 3005 * 4027 * * * * * 5183 5652 502 * 4040 77 0 * * * * 0 * 4569 0 1000 S 78 3078 * * * * * * 5003 * * * * 2246 * * 645 * * * * 78 0 * * * * * * 4595 0 0 A 79 3343 5186 * * 3604 4637 * * 5250 * 3010 * * * * 2253 2595 3147 * 3146 79 0 * * * * * * 4595 0 0 I 80 * * * * * * * 216 * 4043 4303 * * * * * * 5180 * * 80 0 * * * * * * 4595 0 0 E 81 4220 4117 5578 1276 * * * * 3536 4238 * 5176 * 4961 * 2727 3846 4821 * * 81 0 * * * * * * 4595 0 0 I 82 * * * * 5130 * * 87 * 5068 * * * * * * * * * * 82 0 * * * * * * 4595 0 0 Q 83 * * 4278 2947 4986 * * 3812 2756 2731 5906 * * 4001 3979 5448 2622 3482 * * 83 0 * * * * * * 4562 0 0 L 84 * * * * * * * 3673 * 551 3527 * * * * * * 2713 * * 84 0 * * * * * * 4562 0 0 R 85 4201 * * 3859 * * * * 2068 * * * * * 2793 1154 4495 * * * 85 0 * * * * * * 4159 0 0 K 86 * * * * * * * * 674 * * * * * 1422 * * * * * 86 0 * * 0 * * * 4081 0 0 //