HHsearch 1.5
NAME  c3tmhD_
FAM   
FILE  c3tmhD_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c3tmhD_.a3m 
DATE  Wed Jan  9 22:50:52 2013
LENG  28 match states, 28 columns in multiple alignment
FILT  1 out of 5 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.0 
EVD   0.5849  5.3162 
SEQ
>ss_dssp
CTHHHHHHHHHHHHHHHTTSCCCCCCCC
>sa_dssp
EEDDDEEDDDDDEDDDEDEEEEEEEEEE
>ss_pred
CHHHHHHHHHHHHHHHHCCCHHHHHHCC
>ss_conf
9169999999999851000035764179
>Consensus
awkiakmivsdvmqqaqydqplekstkl
>c3tmhD_
AWKIAKMIVSDVMQQAQYDQPLEKSTKL
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
A 1    0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1000	0	0	

W 2    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	2
       0	*	*	*	*	*	*	1000	0	0	

K 3    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1000	0	0	

I 4    *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1000	0	0	

A 5    0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1000	0	0	

K 6    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1000	0	0	

M 7    *	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1000	0	0	

I 8    *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1000	0	0	

V 9    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	9
       0	*	*	*	*	*	*	1000	0	0	

S 10   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	10
       0	*	*	*	*	*	*	1000	0	0	

D 11   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1000	0	0	

V 12   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	12
       0	*	*	*	*	*	*	1000	0	0	

M 13   *	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1000	0	0	

Q 14   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1000	0	0	

Q 15   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1000	0	0	

A 16   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1000	0	0	

Q 17   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1000	0	0	

Y 18   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	18
       0	*	*	*	*	*	*	1000	0	0	

D 19   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1000	0	0	

Q 20   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1000	0	0	

P 21   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1000	0	0	

L 22   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1000	0	0	

E 23   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1000	0	0	

K 24   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1000	0	0	

S 25   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	25
       0	*	*	*	*	*	*	1000	0	0	

T 26   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	26
       0	*	*	*	*	*	*	1000	0	0	

K 27   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	27
       0	*	*	*	*	*	*	1000	0	0	

L 28   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	28
       0	*	*	0	*	*	*	1000	0	0	

//