HHsearch 1.5 NAME c3sk7B_ FAM FILE c3sk7B_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3sk7B_.a3m DATE Wed Jan 9 17:11:45 2013 LENG 111 match states, 111 columns in multiple alignment FILT 22 out of 26 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.5 EVD 0.3788 -1.6408 SEQ >ss_dssp CHHHHHHHHHHHSHHHHTCCSHHHHHHHHHHHHHHHCHHHHHHHHHCCCCEESSHHHHHHTCTTSCEEECTTSSCEEECCSCHHHHHHHHHHHHHHHTCC HHHHHHHHHTC >sa_dssp EEDCECADDBCEBEEBEDCEDBDCCABDAABAACECCDECACEBBDDDECBAEDDEDACEDCEECEBDDADECEBCABBECEDEDBCDAADCAAEDBEBD EDABDDABECB >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC HHHHHHHHHCC >ss_conf 9625899999607999886655999999999999738866999999999861698999943767898118899637787088078999999999982999 99999997419 >Consensus kdxvxxvxxllxsxexxxqxxxVxRFlxiLsxLyxxxpxxFxxxtxxRxYFaxsxexLLxsgxstkPKxIpxtpfWViTNxNTxrKxxmlxxvmxxmgyx xxxiexixxxI >c3sk7B_ KDKVRAMRSLLISDEFAGLKNAIDRFMLILSTLHRIDSASFSEATMFRVYFADNEQTLLASGQTTKPKAIPNTPFWVITNNNTSRKQQMVEQVMVRMGFP SDIIEKVTHSI >UniRef50_A4SPL2(60-169:169) SeqA protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SPL2_AERS4 E=2e-22 s/c=0.96 id=49% cov=95% ------LQALLDSGELQKEEKSINRFMQVLSTLYRDNPVGFTQATEIkgrkRVYFSRDPEALRASGSTTKPKPVPETPFWVISNTNTSRKQNMVAQMMAS MGYDEALIAQVSSAI >UniRef50_A3N0B4(73-181:186) DNA replication inhibitor protein n=9 Tax=Pasteurellaceae RepID=A3N0B4_ACTP2 E=2e-17 s/c=0.83 id=42% cov=95% ---VQKVEKVLKSDVFINESKNVARFLMLLSALHHANAQGFEQATEVvtgteRTYFSKSEEALLSHGSSVKAKQIPDSPFWVVTNNNTARKGLILTGVME SMELPQHIIERV---- >UniRef50_A6FER2(97-206:206) SeqA protein n=1 Tax=Moritella sp. PE36 RepID=A6FER2_9GAMM E=3e-30 s/c=1.20 id=39% cov=96% -----SIAKLIKNKKFKETTVSVTKFIQILSVLYAENPKEFDSATDIkgrkRIYFAKSESELLSAGNTTKPRHIEHTPYWVITNTNTGRKRNIITQLMAE MGYTHALIDAVSQSI >UniRef50_B0TUS0(95-206:206) SeqA family protein n=17 Tax=Shewanella RepID=B0TUS0_SHEHH E=6e-29 s/c=1.14 id=33% cov=98% ---VSDFTSLIDADVLAAQKGAVGRFLFILDTVHRASPVQFEQVLQIqgrdRLYFATSKDALLKASKSANPKEIGQSGFWVTTNNNTAKKRTILSEVLLQ FGTDEAQVTDIIEKI >UniRef50_A1STA5(90-207:207) Negative regulator of replication initiation SeqA n=2 Tax=Psychromonas RepID=A1STA5_PSYIN E=4e-28 s/c=1.06 id=37% cov=95% ------VNALFDSEVFKTEAVVTNKFMMLLATMYYENKNAFEDAAdktkgRTRDYLGQNLNALLAADseeeqnffKASKPRNIPHTPFWVITNANTGRKR IIITQMMASMGYPHYLIERIKEEI >UniRef50_Q15TS1(53-164:174) Negative regulator of replication initiation n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15TS1_PSEA6 E=8e-25 s/c=1.02 id=34% cov=98% KKPVGDVFSQITTDELSEYPKMVERFLKILSVLESMHGAQFDEVLtlsgRNRVYFAKDKETLLQASSVTNPKQIGESTFWVMTNNNTAKKASLIKEVAEV LGYNANDGQRLA--- >UniRef50_B1ZYS0(41-154:168) Putative uncharacterized protein n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZYS0_OPITP E=8e-16 s/c=0.74 id=23% cov=100% -DAAEPIAAFITSVEFRSKFTDAEKYLALLGWLATKHPADFGEFIRslegGRKYLGLSREEILETCRHNQARQIDGTCYWAIMNIDTATKRRFLARVMEF VGYREAAIEFACAAI >UniRef50_Q485E3(90-200:200) SeqA protein n=3 Tax=Alteromonadales RepID=Q485E3_COLP3 E=1e-32 s/c=1.26 id=38% cov=95% ----ETVFNFINKEELAMQRGAVGRFLLILAALYRAHPDQFGVVTDIsgrdRLYFANSENKLAESGSSTKPRQIPESPFWVITNSNTTRKKMMLTKASIS LGYSDSDVEKIRE-- >UniRef50_B4RST7(157-266:272) SeqA protein n=2 Tax=Alteromonas macleodii RepID=B4RST7_ALTMD E=8e-27 s/c=1.10 id=43% cov=86% -------------DALATFTKRVDQFLFVLSAAHKLNAENFSSVESIkgknRTYFATSKEALLENGSSTNPKAIPDSPFWVVTNNNTAKKTNMLEQVLRN LGYQPDVVETVT--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 0 * * * * * * * * * * * 1 0 * * * * * * 1806 0 0 D 2 * * 556 2917 * * * * 2416 * * * * * * * * * * * 2 0 * * * * * * 2496 0 0 K 3 1953 * * * * 3189 * * 1680 * * * 2416 * 2917 * * * * * 3 0 * * * * * * 2496 0 0 V 4 2411 * * * * * * * * * * * * * * * * 300 * * 4 0 * * * * * * 2888 0 0 R 5 * * * 1491 * 3193 * * 4623 * * * * 3334 1851 3083 * * * * 5 0 * * * * * * 2983 0 0 A 6 1801 * 2246 * * * * * 2635 * * * 2700 * * 3383 3447 * * * 6 0 * * * * * * 3121 0 0 M 7 * * * * 3479 * * 2280 * 3283 2449 * * * * * * 1257 * * 7 0 * * * * * * 3239 0 0 R 8 2325 * * 2450 2731 * * * * * * 3685 * 3263 2203 * 3889 * * * 8 0 * * * * * * 3298 0 0 S 9 1470 * * 2929 * * * * 2998 * * 3969 * * * 2276 3155 * * * 9 0 * * * * * * 3384 0 0 L 10 * * * * 2498 * * 4186 * 643 * * * 3858 * * * 4095 * * 10 0 * * * * * * 3395 0 0 L 11 * * * * 3877 * * 1328 * 1084 * * * * * * * 4016 * * 11 0 * * * * * * 3393 0 0 I 12 * * 1962 * * * * 3892 3147 3054 * 1963 * * * * 2425 * * * 12 0 * * * * * * 3393 0 0 S 13 4305 * * 3200 * * * * 2685 * * 4120 * * * 833 3919 * * * 13 0 * * * * * * 3393 0 0 D 14 * * 1359 2627 * 2956 4068 * 4211 * * * * 4488 * * 4511 3091 * * 14 0 * * * * * * 3435 0 0 E 15 3331 * 3493 903 * * * * 4211 4068 * * * * * * * 2613 * * 15 0 * * * * * * 3435 0 0 F 16 * * * * 1382 * * * * 1116 * * * * * * * 4579 * 3147 16 0 * * * * * * 3462 0 0 A 17 1310 * * * * * * 4382 3102 * * * * 3047 2668 2701 * * * * 17 0 * * * * * * 3462 0 0 G 18 4506 * * 2169 * 4039 * 4579 3680 4517 3456 4382 * 2817 * 3114 3148 * * * 18 0 * * * * * * 3462 0 0 L 19 * * * 2103 4352 * * * 3114 4039 * * * 1212 * * 4247 * * 4120 19 0 * * * * * * 3462 0 0 K 20 3969 * * 3680 3114 * * * 1312 * * * 4120 * 3478 3459 3299 * * * 20 0 * * * * * * 3462 0 0 N 21 * * * * * 1852 * * 1497 * * 4039 * * 4881 4579 3114 3102 * * 21 0 * * * * * * 3462 0 0 A 22 1152 * 3114 * * * * * * * 4120 4382 * * 4352 2936 * 2743 * * 22 0 * * * * * * 3462 0 0 I 23 3114 * * * * * * 2848 * * * * * * * * 3969 553 * * 23 0 * * * * * * 3462 0 0 D 24 3539 * 2215 2815 * 1932 * * * * * 2299 * * * * 4357 4563 * * 24 0 * * * * * * 3529 0 0 R 25 * * * * * * * * 2343 * * * * 4359 407 * * * * * 25 0 * * * * * * 3529 0 0 F 26 * * * * 244 * * * * * * * * * * * * * * 2684 26 0 * * * * * * 3529 0 0 M 27 * * * * * * * 4357 * 756 1477 * * * * * * * * * 27 0 * * * * * * 3529 0 0 L 28 2337 * * * 2497 * * * 4224 2250 3242 * * 2998 * * * * 4368 3608 28 0 * * * * * * 3529 0 0 I 29 * * * * * * * 1437 * 1378 * * * * * * 4511 2309 * * 29 0 * * * * * * 3529 0 0 L 30 * * * * * * * * * 0 * * * * * * * * * * 30 0 * * * * * * 3529 0 0 S 31 2228 * 4603 3438 * 3496 * * * * * * * * 4563 1167 3703 * * * 31 0 * * * * * * 3529 0 0 T 32 2150 * * * * 4368 * * 3899 * 4642 * * * * 4576 1539 2790 3496 * 32 0 * * * * * * 3529 0 0 L 33 4359 * * * 4527 * * 4511 * 390 4066 * * * * * * 4603 * * 33 0 * * * * * * 3529 0 0 H 34 2868 * * 3389 * * 1944 * * * * * * * * * * * * 978 34 0 * * * * * * 3529 0 0 R 35 3363 * * 3899 * * 4442 * 3433 * * * * * 1541 2620 2929 * * 4066 35 0 * * * * * * 3529 0 0 I 36 2520 4642 3711 3204 * * * 4133 3496 1867 4224 * * * * * 2970 * * * 36 0 * * * * * * 3529 0 0 D 37 3468 * 2632 * * * 1574 * * * * 1812 * * * 3576 4511 * * * 37 0 * * * * * * 3529 0 0 S 38 2967 * * * * 2622 * * 3278 * * 4877 956 * * 4133 * * * * 38 0 * * * * * * 3529 0 0 A 39 2329 * 4528 3458 * * * * 2986 * * 3271 3899 3036 * 2939 * 3089 * * 39 0 * * * * * * 3529 0 0 S 40 2560 * 2524 2682 * 3031 * * * * * 4359 * 2119 * 3332 * * * * 40 0 * * * * * * 3529 0 0 F 41 * * * * 0 * * * * * * * * * * * * * * * 41 0 * * * * * * 3529 0 0 S 42 2716 * 2411 2768 * 2329 * * 4527 * * 4368 * * * 2778 3711 * * * 42 0 * * * * * * 3529 0 0 E 43 * * 4066 1585 * 4548 * 4527 3468 * * * * 1787 * 3358 * 4528 * * 43 0 * * * * * * 3529 0 0 A 44 1184 * * * 2684 * * * * * * * * * * * * 1306 * * 44 100 3899 * 2000 415 * * 3529 1000 0 T 45 4066 * * 4359 * * * 3496 * 1679 * * * * * * 1027 * * * 45 485 1807 * 2228 346 * * 3529 2451 0 M 46 * * 2510 3031 * * * * * 3115 4768 4576 * 3556 1418 4359 * * * * 46 134 3496 * 2000 415 * * 3529 1000 0 F 47 * * * * 4768 3496 * 1375 3518 * * 4224 * * * * 2238 2875 * * 47 1065 938 * 2032 404 * * 3529 2752 0 R 48 * * * * * * * * * * * * * * 0 * * * * * 48 0 * * * * * * 3529 0 0 V 49 * * 4066 * * * * 4357 3496 2193 * * * 4642 3899 * 2863 1558 * * 49 0 * * * * * * 3529 0 0 Y 50 * * * * * * * * * * * * * * * * * * * 0 50 0 * * * * * * 3529 0 0 F 51 * * * * 232 * * * * 2753 * * * * * * * * * * 51 0 * * * * * * 3529 0 0 A 52 594 * * * * 2215 * * * * * * * * * 3031 * * * * 52 0 * * * * * * 3529 0 0 D 53 3896 * 4133 * * 4548 * * 2754 3496 * 4528 * 2980 2005 4527 2903 * * * 53 0 * * * * * * 3529 0 0 N 54 * * 1826 * * * * * * * * 3099 * * * 734 * * * * 54 0 * * * * * * 3529 0 0 E 55 * * * 1537 * * * * 1366 4066 * * 3711 * 2929 * * * * * 55 0 * * * * * * 3529 0 0 Q 56 4563 * 2981 963 * * * * * * * 3279 * 2590 * 4357 * * * * 56 0 * * * * * * 3529 0 0 T 57 1499 * * 1755 * * * * 4528 * * * * * * 4511 1929 * * * 57 0 * * * * * * 3529 0 0 L 58 * * * * * * * 2684 * 244 * * * * * * * * * * 58 0 * * * * * * 3529 0 0 L 59 4528 3899 * * * * * 4877 * 360 * * * * 3711 * * * * * 59 0 * * * * * * 3529 0 0 A 60 2050 * * 1781 * * * * 3081 * 4563 4576 * 2941 * 3399 4642 * * * 60 0 * * * * * * 3529 0 0 S 61 1489 * * * * 4527 4442 * * * * 3109 * * * 1515 3496 * * * 61 0 * * * * * * 3529 0 0 G 62 * 3496 4066 * * 847 * * * * * * * * * 1757 * * * * 62 89 4066 * 3000 193 * * 3529 1000 0 Q 63 4368 * * * * * 4548 * 2422 * * 2049 * 4133 2684 1900 * * * * 63 0 * * * * * * 3529 0 0 T 64 4066 * * * * * 2933 * * * * * * 2941 * 1333 2627 4224 * 3899 64 0 * * * * * * 3529 0 0 T 65 2906 * * * * * * * * * 4527 2684 5624 * * 3298 1001 4442 * * 65 0 * * * * * * 3529 0 0 K 66 * * * * * * * * 1111 * * 1391 * 2684 * * * * * * 66 0 * * * * * * 3529 0 0 P 67 2293 * * * * * * * * * * * 329 * * * * * * * 67 0 * * * * * * 3525 0 0 K 68 * * * * * * * * 537 * * * * * 1685 * * * * * 68 0 * * * * * * 3525 0 0 A 69 3424 * * 2026 * * 3586 * * * * 3255 3685 1338 * * * * * * 69 0 * * * * * * 3525 0 0 I 70 * * * * * * * 304 * * * * * * * * * 2395 * * 70 0 * * * * * * 3525 0 0 P 71 4557 * 3489 4346 * 2405 * * * * * * 666 * * * * * * * 71 0 * * * * * * 3525 0 0 N 72 * * 2161 2510 * 2311 3185 * * * * 2677 * 4585 * 4557 4355 * * * 72 0 * * * * * * 3525 0 0 T 73 * * * * * * * * * * * * * * * 1074 930 * * * 73 0 * * * * * * 3525 0 0 P 74 * 3489 * * * 2496 * * 3873 * * * 818 * * * 3350 * * * 74 0 * * * * * * 3525 0 0 F 75 * * * * 875 * * * * * * * * * * * * * * 1137 75 0 * * * * * * 3525 0 0 W 76 * * * * * * * * * * * * * * * * * * 0 * 76 0 * * * * * * 3525 0 0 V 77 2668 * * * * * * * * * * * * * * * * 247 * * 77 0 * * * * * * 3525 0 0 I 78 * * * * * * * 669 * * 3350 * * * * * 2496 3381 * * 78 0 * * * * * * 3525 0 0 T 79 * * * * * * * * * * 2668 * * * * 4648 317 * * * 79 0 * * * * * * 3525 0 0 N 80 * * * * * * * * * * * 0 * * * * * * * * 80 0 * * * * * * 3525 0 0 N 81 4040 * * * * * * 2668 * * * 1430 * * * 3510 1630 * * * 81 0 * * * * * * 3525 0 0 N 82 * * 2668 * * * * * * * * 247 * * * * * * * * 82 0 * * * * * * 3525 0 0 T 83 * * * * * * * * * * * * * * * 3531 131 * * * 83 0 * * * * * * 3525 0 0 S 84 1264 * 4525 * * 2171 * * * * * * 3873 * * 3039 2962 * * * 84 0 * * * * * * 3525 0 0 R 85 * * * * * * * * 1639 * * * * * 939 * 2668 * * * 85 0 * * * * * * 3525 0 0 K 86 * * * * * * * * 0 * * * * * * * * * * * 86 0 * * * * * * 3525 0 0 Q 87 4210 4875 * * * 4421 * * 2962 * 4537 * * 2231 1213 * 4343 * * * 87 0 * * * * * * 3525 0 0 Q 88 3483 * * * * * * 4040 * 3478 3510 2504 * 4510 2668 2587 2962 * * * 88 0 * * * * * * 3525 0 0 M 89 * * * * 2668 * * 1582 * 4210 1137 * * * * * * * * * 89 0 * * * * * * 3525 0 0 V 90 * * * * * * * 2050 * 732 * * * * * * * 2675 * * 90 0 * * * * * * 3525 0 0 E 91 2583 * * 2008 * * 4506 * 3032 * * * * * * 3541 1819 4355 * * 91 0 * * * * * * 3525 0 0 Q 92 * * * 1861 * 3478 3153 * 4514 * * * * 1637 2668 * * * * * 92 0 * * * * * * 3525 0 0 V 93 3526 * * * * * * 3153 * 2687 3312 * * * * * * 876 * * 93 0 * * * * * * 3525 0 0 M 94 2851 * * * * * * * * 1762 935 * * * * 4514 * * * * 94 0 * * * * * * 3525 0 0 V 95 2738 * * 1874 * 4499 * 3510 * 3554 * * * 3158 4343 * 3527 3157 * * 95 0 * * * * * * 3525 0 0 R 96 4525 * * 4346 3489 * 4557 * 3483 * * 4343 * 3541 4510 1377 * 4210 * 3873 96 0 * * * * * * 3525 0 0 M 97 * * * * 3541 * * * * 1630 1205 * * * * * * 2668 * * 97 0 * * * * * * 3525 0 0 G 98 * * * 3478 * 417 4355 * * * * * * 3153 * * * * * * 98 0 * * * * * * 3525 0 0 F 99 * 3452 * * 2678 * * * * 3478 * * * * * * 4585 4499 * 794 99 0 * * * * * * 3525 0 0 P 100 * * 2532 * * 4723 * * * * * 4210 1704 2899 3489 4514 2631 * * * 100 0 * * * * * * 3525 0 0 S 101 3023 * 2738 1705 * * 3185 * * * * 4506 4343 4421 * 2978 4525 * * * 101 0 * * * * * * 3525 0 0 D 102 1941 * 3424 2078 * * 4421 * 4499 * * 4210 * * * 4514 3443 3873 * 4040 102 0 * * * * * * 3525 0 0 I 103 3489 * 2853 * * * * 3465 * 1497 3873 * * 2945 4557 * * 3520 * * 103 0 * * * * * * 3525 0 0 I 104 2507 * * * * 4210 * 818 * * * * * * * * * 2301 * * 104 0 * * * * * * 3525 0 0 E 105 3685 * 3438 799 * * * * 3175 * * * * 4210 * 4355 4585 * * * 105 0 * * * * * * 3525 0 0 K 106 3350 * 4585 4537 3489 * 3873 4506 2055 * * * * 4648 2326 3528 4343 * * * 106 0 * * * * * * 3525 0 0 V 107 3489 * * * * * * 1202 * 4210 * * * * * * * 1244 * * 107 0 * * * * * * 3525 0 0 T 108 2483 1810 * * * * * 3280 3781 * * * * 3685 4055 3227 3114 * * * 108 0 * * * * * * 3448 0 0 H 109 3187 * 3894 1481 * 1853 3965 * * * * * * 3860 * 4187 * * * * 109 0 * * * * * * 3318 0 0 S 110 2123 * * 3547 * * 2862 * 3926 3434 * * * * 3802 2817 2511 * * * 110 0 * * * * * * 3265 0 0 I 111 * * * * * * * 104 * 3849 * * * * * * * * * * 111 0 * * 0 * * * 3265 0 0 //