HHsearch 1.5 NAME c3rkoE_ FAM FILE c3rkoE_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3rkoE_.a3m DATE Wed Jan 9 18:53:12 2013 LENG 95 match states, 95 columns in multiple alignment FILT 103 out of 247 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.7 EVD 0.4912 1.1414 SEQ >ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCC >sa_dssp EEDEEDEEDEDEDDEDEEDDEDEDDEDEEEDEEDCBCECDDDBEEDEDDCCEECEDCDECDEEDDEECEEDBCECDEEBEDDDEECDEDCAEEEE >ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >ss_conf 99999999999999999999983788888885414899999999999999999999999995215899999999999999999999985644679 >Consensus axlixxxxxxxxxxxxlxxsxllxPxxxxrxxFsvrfyliAilFliFDvEixxlxPwavxxxxxxxxxxxxxxxFlxiLxxGlxYewxkGaLxWx >c3rkoE_ AFAIFLIVAIGLCCLMLVGGWFLGGRARARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGWVGFVEAAIFIFVLLAGLVYLVRIGALDWT >UniRef50_A1ALN9(8-122:123) NADH-quinone oxidoreductase subunit n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ALN9_PELPD E=1e-09 s/c=0.56 id=33% cov=100% SFFLFLLASVGFVGLIVGLNALLGPRSEPSAiklepfecgsnplqqrnvrPLSIKYYPIAIFFLLFDLEAVLLFIWAVSAgnRDMATLSLFSFLFFMGVL SLAFIYIWKEGGLEW- >UniRef50_Q9HJJ7(99-142:144) NADH dehydrogenase, chain A related protein n=6 Tax=Thermoplasmatales RepID=Q9HJJ7_THEAC E=0.001 s/c=1.02 id=32% cov=46% ---------------------------------------------------LLLFPWAVDFKQLGLIKFIETLIFLAMPLFGVYYAFKHGYMRW- >UniRef50_Q6SL38(43-113:114) NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Armillifer armillatus RepID=Q6SL38_9MAXI E=4e-07 s/c=0.79 id=22% cov=76% ------------------------PKNKTRHPLSLQFFLISLTFLMFDIELTIILPLPLSSSLNLPTSLTSSITLLPLLILGVYYEKSMGLLSWS >UniRef50_C1ZFW3(6-124:125) NADH-quinone oxidoreductase subunit n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZFW3_PLALI E=5e-11 s/c=0.58 id=31% cov=100% AVLIYTGVLVGFVITNLILTHIIGPSkktavkqmpyesgmdpvGDARQPFDVKFYLVAILFLIFDVELLFMYPWAVAAYkgdggvpaELSSTVYGVMLVF FGTLAIAYIYAWRKGVFKW- >UniRef50_A7DVU5(42-114:117) NADH-ubiquinone oxidoreductase chain 3 n=2 Tax=Xenoturbella bocki RepID=A7DVU5_XENBC E=8e-08 s/c=0.80 id=25% cov=77% ----------------------FAPKSNMRIPFSIRFFYIAILFIMFDLEIALLMPWPMALsNSLTTTPVMMALTIITALTISLLLEWATGALEW- >UniRef50_B9LUE9(6-122:138) NADH-ubiquinone/plastoquinone oxidoreductase chain 3 n=11 Tax=Halobacteriaceae RepID=B9LUE9_HALLT E=4e-12 s/c=0.62 id=31% cov=100% AIGALAVVGLVIPLAMMSVSALLRPSVPetgksttyesgetptggTRIRFNIQYYMVALLFVVFDIETVLLFPWAVIYRPAISAGvpmidlLWPMLAFVG VLAVGLVWAWRSGAISW- >UniRef50_B8DS02(9-120:126) NADH-quinone oxidoreductase subunit n=2 Tax=Desulfovibrio RepID=B8DS02_DESVM E=2e-07 s/c=0.51 id=31% cov=100% AIILFLIAGLAFAGGPLILAMLvaprarggdlgmsyecgMRPHGNAWTRFGINYYVYALLFIAFDVDVLYLFPAAAHYHtTVGWTAFIEICVFLFFLVLA LVYFRAKGVFTW- >UniRef50_D1ZZ50(3-111:206) NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Sordaria macrospora RepID=D1ZZ50_SORMA E=0.001 s/c=0.41 id=23% cov=98% SMTLFILFVSIIALLFLLINLVFAPHIPyqeknsefecgfhsfhqTRFPFDSPIAAQAICFVILDIELFTMYPYVGSLGINTLYSLVVILGFMFVISAGF VFELGKGAL--- >UniRef50_C7FEY0(58-124:143) NADH-ubiquinone oxidoreductase chain 3 n=2 Tax=Saccharomycetales RepID=C7FEY0_DEKBR E=0.0001 s/c=0.71 id=25% cov=63% ---------------------------------PIPFILIALLFLPFDLEISSMLPYIISSYSIGLYGLILFIIFLSILVIGFTFELNSKAI--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 625 * * * * * * * * * * * * * * 1507 * * * * 1 0 * * * * * * 3912 0 0 F 2 * * * * 1622 * * 2093 * 2198 3414 * * * * * * 4261 * 3704 2 0 * * * * * * 4200 0 0 A 3 3244 * * * 3126 5575 * 3756 * 1002 * * * * * * 3522 3346 * * 3 0 * * * * * * 4336 0 0 I 4 4830 * * * 4365 6235 * 1104 * 2099 4953 * * * * * 5700 2709 * * 4 0 * * * * * * 4376 0 0 F 5 4974 * * * 1648 * 4852 6190 * 2033 4921 * * 2826 * * * 5833 * 2600 5 0 * * * * * * 4405 0 0 L 6 3436 * * * 2555 6134 * 2744 * 1666 5115 * * * * 4534 4800 2730 * * 6 0 * * * * * * 4411 0 0 I 7 3082 * * * 4700 3757 * 2298 * 1681 4411 * * * * * * 2390 5933 * 7 0 * * * * * * 4434 0 0 V 8 2861 * * * 3318 4246 * 2954 * 2874 5732 * * * * * 3804 1500 * * 8 0 * * * * * * 4434 0 0 A 9 1165 * * * * 2311 * 5284 * 6120 5593 * * * * 2939 4295 3177 * * 9 0 * * * * * * 4434 0 0 I 10 3034 * * * 4483 5055 * 3098 * 1984 5986 * 4808 * * 4363 4175 1847 * * 10 0 * * * * * * 4434 0 0 G 11 3193 5732 * * 4442 1623 * 3036 * 3443 5786 * * * * 6023 4273 2307 * * 11 0 * * * * * * 4434 0 0 L 12 * * * * 1654 * * 1814 * 2008 4102 * * * * * * 3459 * * 12 0 * * * * * * 4434 0 0 C 13 1937 6160 * * * 2913 * 5879 * 6039 5972 * 3799 * * 2718 3784 2015 * * 13 0 * * * * * * 4434 0 0 C 14 2260 3678 * * 4965 2965 * 3224 * 2487 * * * * * 4480 3646 2808 * * 14 0 * * * * * * 4445 0 0 L 15 3090 * * * 6351 2256 * 2729 * 2653 5864 * * * * 4882 3415 2277 * * 15 0 * * * * * * 4445 0 0 M 16 3063 * * * 3259 3945 * 2875 * 2730 2361 4422 3943 * * 4580 4458 5047 * * 16 0 * * * * * * 4445 0 0 L 17 4270 * * 6065 3951 * * 2947 * 1173 4696 6102 * * * 4809 * 2517 * 4966 17 0 * * * * * * 4445 0 0 V 18 4549 * * * 4138 2391 * 3775 * 2189 4990 * * * * 4502 3455 1995 * * 18 0 * * * * * * 4445 0 0 G 19 1740 * * * 6042 4323 * 3934 * 1636 * * * * 5902 5084 * 2306 * * 19 0 * * * * * * 4445 0 0 G 20 3017 * * * 6174 2604 * * * * * 2676 4681 * * 1167 4644 5864 * * 20 0 * * * * * * 4445 0 0 W 21 2664 * * 6065 4124 * 3219 4815 4675 2752 5691 5089 * * 3486 5465 5747 6323 2970 3058 21 0 * * * * * * 4445 0 0 F 22 4674 * * * 2429 * * 3020 5902 929 * * * * * * * 3186 * * 22 28 5691 * 4087 87 * * 4445 1000 0 L 23 5182 * * * 2782 * * 2514 * 938 5730 * * * 5661 * 6673 3615 * * 23 76 4282 * 3446 139 * * 4507 1963 0 G 24 2088 * * 5685 * 1173 * * * * * 4292 5798 6121 2514 4529 * * * * 24 200 2953 * 4104 86 * * 4527 3013 0 G 25 * * 6271 * * 3977 6753 * * * * * 267 4686 4677 7494 * * * * 25 37 5296 * 4087 87 * * 4640 1614 0 R 26 6995 * * 5695 5512 5035 3066 5585 2017 4333 5272 4092 * 6042 2698 3366 4804 4133 * 4648 26 128 3554 * 4102 87 * * 4640 2935 0 A 27 5310 * 5142 4710 6619 2096 * 4665 3587 * * 4468 * 6308 2629 1972 5663 4399 * * 27 56 4713 * 4050 90 * * 4724 2100 0 R 28 * * 3654 4164 * 6377 5106 * 2327 * * 3179 1841 4441 4205 3615 5534 * * 4988 28 262 2679 6628 4119 86 * * 4749 3582 0 A 29 1653 * 6576 * * 4342 5278 * 6258 * 5245 4752 4020 5630 * 2026 2530 7209 * 6311 29 26 5795 * 4170 82 * 0 4839 1092 1000 R 30 6711 * * * * * 4652 * 3978 4722 6904 4930 4465 4163 730 6394 * * 3549 7227 30 44 5042 * 4216 80 * 0 4835 2027 1000 L 31 3917 * * 3947 3532 4290 5091 3406 5040 3225 4336 5270 5148 3888 * 3953 2768 3508 * * 31 70 4405 * 4230 79 * 0 4816 2328 1000 R 32 6044 * * * 6361 5924 * * 2698 * * 3983 1491 4568 2083 4749 4597 6375 * 6110 32 34 5414 * 4106 86 * 0 4836 1875 1000 L 33 * * * * 517 * * 5684 * 3405 4596 * * 6465 * * * 4866 5682 3627 33 46 4995 * 4087 87 * 0 4863 1539 1000 S 34 5042 * 2833 6992 * 4890 4836 * 6122 * * 3199 3483 4740 * 1026 6419 * * * 34 0 * * * * 0 * 4863 0 1000 A 35 4103 * * * 5849 6900 * 1850 * 3071 5752 * 5283 6458 * 4369 4895 1434 * 6384 35 39 5228 * 4140 84 * * 4860 1907 0 K 36 6409 * * 6323 * 5044 3867 6376 2358 * * 4420 4250 3259 1265 4809 * 6129 * * 36 0 * * * * * * 4877 0 0 F 37 * * * * 578 * * 5253 * 6235 * * * * * * * * 6179 1854 37 0 * * * * * * 4886 0 0 Y 38 5253 6669 * * 1324 * * 5842 * * * * * * * 5304 * * * 938 38 0 * * * * * * 4886 0 0 L 39 5253 * * * 6113 * * 3789 * 696 3515 * 6540 * 6385 * 6763 3139 * 4768 39 0 * * * * * * 4886 0 0 V 40 6179 * * * 4794 * * 1540 * 3254 * * * 5253 * * 4230 1564 * 3578 40 0 * * * * * * 4886 0 0 A 41 430 * * * * 4265 * * * 5980 * * * 6634 * 2972 4580 6542 * * 41 0 * * * * * * 4886 0 0 M 42 6541 5870 * * 5335 * * 1323 * 2010 2896 * * * * * 5753 2926 * 6063 42 0 * * * * * * 4886 0 0 F 43 6395 5253 * * 4842 * * 2803 * 845 4568 * * * * 5433 4270 3187 * * 43 0 * * * * * * 4886 0 0 F 44 * * * * 89 * * * * 5737 * * * * * * * * * 4595 44 0 * * * * * * 4886 0 0 V 45 6230 * * * 6687 * 6063 2038 * 1148 4606 * * * * * * 2143 * * 45 0 * * * * * * 4886 0 0 I 46 3910 * * * * * * 1094 * 2093 4069 * 5842 * * * * 2702 * * 46 0 * * * * * * 4886 0 0 F 47 * * * * 71 * * * * 4788 6439 * * * * * * * * * 47 0 * * * * * * 4886 0 0 D 48 4684 * 188 3582 * * * * * * * * * * * * * * * * 48 0 * * * * * * 4886 0 0 V 49 6329 * * * 5980 6498 * 1953 * 2008 4554 * * * * 5870 * 1344 * * 49 0 * * * * * * 4886 0 0 E 50 * * 3709 137 * 6172 * * * * * * * * * * * * * * 50 0 * * * * * * 4886 0 0 A 51 2667 * * * * 6450 * 1815 * 3046 5233 * * * * 4338 3235 2037 * * 51 0 * * * * * * 4886 0 0 L 52 1909 * * * 5262 * * 2628 * 2891 6198 * * * * 5038 3590 1816 * * 52 0 * * * * * * 4892 0 0 Y 53 * * * * 1514 * * 3366 * 1571 6172 * * * * 5843 5262 5547 * 2862 53 0 * * * * * * 4892 0 0 L 54 * 6443 * * 3623 * * 2687 * 730 3288 * * * * * 6569 4781 * * 54 0 * * * * * * 4892 0 0 F 55 * * * * 1308 * * 3322 * 2529 4562 * * * * * 6323 4876 6833 2152 55 0 * * * * * * 4892 0 0 A 56 3813 * * * 6374 * * 6542 * 6418 * * 232 * * 4861 * 6839 * * 56 12 * 6947 * * * * 4892 0 0 W 57 5441 5880 * * 4487 * * 4140 * 3013 4869 * * * * 6045 * 3576 1090 2924 57 38 5278 * 485 1808 0 * 4893 1423 1000 S 58 975 5025 * * 4835 4754 * 3533 * 4909 * * 3395 * * 3926 4608 3898 * * 58 42 5909 6412 1974 424 * * 4892 1633 0 T 59 3748 * * * 5379 5256 * 3004 * 2576 4163 * 4585 6163 * 6941 4104 1458 5024 6562 59 0 * * * * * 0 4882 0 1000 S 60 2617 5457 5123 * * 5093 6371 3384 6979 5736 4322 4679 * 5305 6907 2186 3768 2452 6030 6990 60 0 * * * * 0 * 4882 0 1000 I 61 3977 6945 * * 1966 7144 6845 3169 4926 2478 4905 5410 * * * 3999 * 4882 5585 2655 61 63 4558 * 4288 76 * * 4892 2286 0 R 62 4076 6109 6285 6371 5266 3391 4414 6273 2793 3634 5562 2672 7044 5556 3001 3545 6800 5458 6417 4862 62 62 4579 * 1967 426 * * 4892 2508 0 E 63 3350 * 3123 2767 5053 4097 * 5262 4772 4767 4863 3855 7062 3798 5609 3230 4027 5198 * 4216 63 104 3850 * 2275 334 * * 4892 2931 0 S 64 4798 * * 6412 3949 4256 * 3579 * 1623 3302 3631 4677 * * 3933 5069 3731 5606 6109 64 99 3921 * 1207 819 * * 4892 2796 0 G 65 3532 * 6109 6287 5675 1413 * 6062 4878 6016 4949 3068 4696 * 6800 2807 4223 5011 * * 65 38 6038 6503 1833 475 * * 4892 1577 0 W 66 4467 * * 5797 4007 * * 3351 6164 2300 4279 3592 4562 6518 6570 4076 4731 4111 2357 6447 66 49 5341 6834 551 1656 0 * 4884 1648 1000 V 67 4824 * 6667 4470 2253 5629 * 4082 6179 3338 4400 6734 4688 5081 4841 3660 3484 4155 6047 3208 67 0 * * * * * 0 4894 0 1000 G 68 2577 * 6149 * 5258 1499 * 4637 5558 4522 5461 6483 6410 5336 * 2982 3766 4946 5636 6579 68 31 5552 * 1952 431 0 * 4894 1565 1000 F 69 6237 * * * 1859 6171 * 4235 * 1698 4569 * * * * 4692 6122 3376 4644 3262 69 42 5128 * 978 1023 * * 4894 1894 0 V 70 5364 * * * 3218 4883 * 2093 * 3297 4612 6373 * * * 5950 4602 2208 2544 * 70 36 5334 * 0 * * * 4894 1545 0 E 71 2972 6049 7188 1919 * 4119 * 3220 4882 4992 5659 7015 6074 7340 7035 2899 4029 3642 * 5364 71 32 6360 6656 1000 1000 * * 4894 1000 0 A 72 3659 5434 * * 3893 3737 * 3203 * 2978 1796 * 6841 * * 4330 4088 3125 * * 72 18 6359 * 0 * * 0 4885 1000 1000 A 73 4401 5228 * * 2751 4463 * 3240 * 1615 4246 5830 * * * 4753 4716 3378 5067 5138 73 0 * * * * * 0 4885 0 1000 I 74 4571 6377 6103 6443 2933 4390 * 2669 * 2071 4952 * * * * 4671 3825 2424 * 5835 74 0 * * * * 0 * 4885 0 1000 F 75 * * * * 225 * * 3643 * 6016 * * * * * * 5890 6583 * 5523 75 0 * * * * * * 4894 0 0 I 76 6668 * * * 4382 * * 2275 * 1275 3481 * * * * 5410 4193 2811 * 6360 76 0 * * * * * * 4894 0 0 F 77 2825 * * * 3508 2718 * 2915 * 1926 4832 * 6016 * * 5248 4510 3286 * * 77 25 5869 * 0 * * * 4894 1592 0 V 78 4746 6360 * 5265 3516 * * 1486 * 2972 5313 * 5839 * * 5911 4703 1970 * * 78 0 * * * * * * 4894 0 0 L 79 * * * * 5941 * * 3895 * 217 * * 6638 * * * * 4441 * * 79 0 * * * * * * 4894 0 0 L 80 3165 6510 * 7026 2988 4592 * 3404 * 2052 6125 * * * * 4074 2968 2860 6330 6064 80 0 * * * * * * 4894 0 0 A 81 3221 6676 * * 4270 6734 * 2487 * 1765 3895 * * * * * 5260 2110 6386 6351 81 0 * * * * * * 4894 0 0 G 82 2593 * * * * 466 * 6166 * * * * 5812 * * 4277 6285 6151 * * 82 0 * * * * * * 4894 0 0 L 83 * * * * 1913 6166 * 4108 * 1155 6552 * * * * * 5783 3647 4874 3820 83 0 * * * * * * 4894 0 0 V 84 2883 * * * 3199 6078 * 1902 * 2848 6511 * * * * * * 2165 5624 3642 84 0 * * * * * * 4894 0 0 Y 85 * * * * 4227 * 3528 5136 * 6422 6370 * * * * * * 5168 4094 471 85 20 6166 * 0 * * * 4894 1000 0 L 86 2421 * * 830 5242 * * 4624 * 4361 6415 * * * * * * 3016 * * 86 0 * * * * * * 4894 0 0 V 87 6323 * * * 5131 * * 3463 6016 3342 6122 * * * 6374 * * 4787 653 4168 87 0 * * * * * * 4894 0 0 R 88 4468 6445 * * 6330 4486 * 5619 1566 5143 6580 3091 * 6254 2371 3717 6884 4973 5605 5117 88 0 * * * * * * 4894 0 0 I 89 6864 6410 6541 2421 * * 5602 7164 1220 5839 4815 4490 * 4131 3890 4452 5362 6668 6774 6106 89 0 * * * * * * 4894 0 0 G 90 * * 6445 6511 * 272 * * 3601 * * 6386 * 6360 6216 6064 * * * 6106 90 0 * * * * * * 4894 0 0 A 91 1021 * 5307 * * 4033 * 4136 * 4609 6166 * * * 6237 3404 6587 2673 * 4870 91 0 * * * * * * 4894 0 0 L 92 * * * * 2965 * * 4121 * 352 5015 * * * * * * * * * 92 0 * * * * * * 4894 0 0 D 93 3933 * 1878 1790 * * 6601 6208 4798 * * 3354 * 5004 4108 3523 4657 * * * 93 0 * * * * * * 4754 0 0 W 94 * * * * * * * * * * * * * * * * * * 36 5359 94 0 * * * * * * 4719 0 0 T 95 * * * * * * * * * * * 1575 * * * 1395 1816 * * * 95 0 * * 0 * * * 3837 0 0 //