HHsearch 1.5 NAME c3r27A_ FAM FILE c3r27A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3r27A_.a3m DATE Sat Sep 17 09:58:58 2011 LENG 84 match states, 84 columns in multiple alignment FILT 102 out of 4613 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 8.3 EVD 0.4545 1.8848 SEQ >ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSCCC >sa_dssp EDEDACAACADEBDEEBEEECACECADEBCECDDBDDCEEEDCACABAEDDEBACDABEDCEEDDBEADEDDBEBDBBECEECE >ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECHHHHHHHHHHHCCCCEEECCEEEEEEECCCCCCC >ss_conf 964787899868974468999999752035653025662010399999113569999999628951757848999802754359 >Consensus xxppsxxlxixnLpxxxtexdLxxxfxxxGxvxxxxxxxxxxxafVxfxxxxxAxxaxxxxxxxxxxxxgxxixvxxsxxxxix >c3r27A_ KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKIS >UniRef50_A8DYK5(491-565:1306) CG4266, isoform B n=7 Tax=melanogaster subgroup RepID=A8DYK5_DROME E=2e-05 s/c=0.67 id=17% cov=35% --------------------ELSDTFGEYGDIVSIDQIVPRGCAFIVM------------------------------------ >UniRef50_UPI000175FAE3(830-902:2195) PREDICTED: similar to zinc finger, matrin-like n=1 Tax=Danio rerio RepID=UPI000175FAE3 E=0.0002 s/c=0.64 id=19% cov=83% ------IVEITNLPEaGVTEEELTNLAKPYGFTETPVIAITQQRAYLQMPNTEAAEKMVKTFSETPAKVKEKEITV--------- >UniRef50_B6JVQ9(187-274:476) RNA-binding post-transcriptional regulator csx1 n=2 Tax=Ascomycota RepID=B6JVQ9_SCHJY E=8e-05 s/c=0.55 id=19% cov=95% KTPEFS-IFVGDLGPEVTEPMLLSLFQSRYRscksakiMMDSNTNLSRGYGFVRFYDENDQKRALTEMQG--VYCGNRPMRIAMATPKS-- >UniRef50_Q54B40(15-98:886) Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54B40_DICDI E=9e-06 s/c=0.61 id=19% cov=95% ----SSTIYVSNIRHSTPINSIFNIFSKFGPLERCEIPENKFgktrgFAFIEFENKANAYTAFEELAKQEILLDGRVLKLEWARATKL- >UniRef50_A2DS99(164-238:238) Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2DS99_TRIVA E=3e-05 s/c=0.66 id=17% cov=89% ---PNKILFIQNIPENTDKAVLDFLFGQFPGFVEvRTLPGKQTIAFVEYKTEEQSAVAIQEL--NGFEIENHHLTIQFSK----- >UniRef50_UPI000180C5A3(420-502:1029) PREDICTED: similar to polypyrimidine tract binding protein 2 n=1 Tax=Ciona intestinalis RepID=UPI000180C5A3 E=9e-05 s/c=0.58 id=19% cov=94% -----RVLYLRYKSNRIMESDLRQLAEAFGKVtnlltIRAKIPNGYHQAFMEMDHWDCAAAMLERYMTKSPLIKGCVVMVQKSNYKDL- >UniRef50_A0E9X0(18-100:102) Chromosome undetermined scaffold_85, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0E9X0_PARTE E=0.0001 s/c=0.57 id=18% cov=95% --PPSQTLHLSNIKGKMCEDDtyIKELFKGIGNVQAIKFIHIDKQKHMALVRLSSLEEALNgAALLHGKEVMGRKINVSFTKSK--- >UniRef50_A2ED38(62-134:415) Putative uncharacterized protein n=4 Tax=Trichomonas vaginalis RepID=A2ED38_TRIVA E=0.0003 s/c=0.64 id=17% cov=83% -------VFFFSIPYKIDQAEFKKFVEKFGEVQNIYEKCENGNYFVTYYDLRSAIAAVE--QDRNETLNDRVVRMNYA------ >UniRef50_Q4CRD0(3-91:126) RNA-binding protein, putative n=10 Tax=Trypanosomatidae RepID=Q4CRD0_TRYCR E=0.0002 s/c=0.53 id=17% cov=100% QSKPRARLFVGQLNFGATEDDIRAIFDFYGHVlsvnllHDKSKNRSKGSAFVEYGSTGEADCAIRSLHNRYYMERDKPLQVSYCERSEL- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * 2979 * * * * 993 * * * * 2463 2402 * * * * * 1 0 * * * * * * 5683 0 0 T 2 3027 * 4455 3340 * * * * * * * 3543 3442 * 4204 2218 1806 * * * 2 0 * * * * * * 5891 0 0 P 3 * * * 3397 * * * * 4060 5008 * * 524 4074 * * 4079 * * * 3 38 5255 * 1000 1000 * * 6832 1000 0 A 4 2928 * * 4179 * * 5832 * * * * 5479 540 * * 4802 * 4321 * * 4 36 * 5331 * * * * 7630 0 0 S 5 * 4947 * 5852 * 4444 * * * * * 3483 5114 6134 4864 766 2917 * * 5866 5 0 * * * * * 0 7629 0 1000 P 6 4007 6165 * 6270 5952 * 6442 * 2581 * * 3203 4072 5853 1615 3225 3841 * * 5177 6 23 5984 * 0 * 0 * 8107 1000 1000 V 7 4198 * * 6500 6148 6425 * 2925 4614 5289 * 4483 * * 5281 4119 1682 1941 * 6581 7 0 * * * * * * 8233 0 0 V 8 6263 6327 * * * * * 2196 * 1105 * * * * * * * 1779 * * 8 17 * 6412 * * * * 8439 0 0 H 9 * * * 6508 1732 * 2668 6437 5343 3462 4471 * * 5984 6309 * * * 4637 1786 9 31 5562 * 1000 1000 0 * 8416 1595 1000 I 10 6409 6488 * * 3502 * * 1522 * 2369 6577 * * * * * * 1571 * * 10 0 * * * * * * 8467 0 0 R 11 4100 6746 4677 5591 5224 2230 5437 * 3090 * * 5494 * 4625 2517 2235 4561 * * * 11 14 6658 * 1000 1000 * * 8467 1000 0 G 12 * * 5494 * * 2402 4367 * 4444 * * 857 6368 5229 4317 5129 * * * 5335 12 0 * * * * * * 8467 0 0 L 13 * * * * 6568 * * 2162 6198 694 4518 * * * * * 6121 3711 * * 13 11 6980 * 0 * * * 8473 1000 0 I 14 5289 * 3599 6556 * 3896 4230 5941 5602 5723 * 4119 1120 5546 5384 3134 5907 6443 * * 14 29 5659 * 609 1538 * * 8473 1720 0 D 15 5131 * 3498 3871 4202 5437 4205 6547 3907 4522 * 3552 2450 4927 4246 4468 4849 * 5388 3259 15 60 4629 * 361 2174 * * 8473 2710 0 G 16 4756 * 2756 2792 5560 3555 6281 * 3287 6587 * 3521 4999 4840 3822 3182 3768 6356 6668 6804 16 28 6659 6795 1000 1000 * * 8473 1000 0 V 17 3212 3810 * * 6441 6471 * 2663 * 3551 3758 * * * * 6415 2500 2163 4816 4892 17 13 6799 * 1585 585 0 * 8470 1000 1000 V 18 5081 5737 3343 5857 * 5414 6018 * 4512 5645 6215 3543 6564 5389 5828 2768 1262 5781 * * 18 15 6633 * 2000 415 * * 8490 1000 0 E 19 5215 6520 3356 1138 * * 5755 4969 4091 6121 6540 5673 3789 3823 4776 4906 6765 4863 * * 19 0 * * * * * * 8490 0 0 A 20 2494 6485 2609 2419 * 5152 5073 * 4044 6830 6581 3918 * 4640 3967 3701 4213 6544 6499 * 20 16 * 6485 * * * * 8498 0 0 D 21 4990 * 1469 1984 5691 4613 * 6465 5620 6672 7805 4833 * 3233 6527 5490 5343 5127 6727 6481 21 34 5441 * 594 1567 0 * 8476 1719 1000 L 22 * * * * 4232 * * 2177 * 793 * * * * 5962 * * 2916 * * 22 16 6480 * 2585 263 * * 8498 1000 0 V 23 3971 7818 6821 3397 5527 * 5110 5214 2651 3031 5099 5571 * 4731 2562 5956 4748 4004 7138 3492 23 0 * * * * * * 8498 0 0 E 24 4107 6485 2998 2654 6821 6838 6402 6510 3073 5551 * 3595 6544 3224 4534 3402 3480 5654 * 5761 24 0 * * * * * * 8498 0 0 A 25 4022 6199 6725 4565 3113 * 4165 2879 * 1765 5506 6423 6838 5031 4879 6856 5070 3379 * 5048 25 44 5058 * 2807 222 * * 8498 2084 0 L 26 4157 4370 6183 * 940 5174 * 5524 * 2308 6775 * * * * * * 3668 * 5546 26 35 5385 * 678 1415 * * 8498 1716 0 Q 27 4185 6535 5079 2758 5628 4133 * 5746 2922 5174 * 4645 * 3746 3686 2088 5079 5125 * 5995 27 0 * * * * * * 8498 0 0 E 28 4267 * 4882 3736 5386 4087 4525 6402 2731 5522 * 4111 3150 3104 3327 3913 4650 5192 * 6839 28 45 * 5037 * * * * 8498 0 0 F 29 5232 4165 6395 5767 1508 6328 4114 3756 5127 4675 * 5427 * * * 5275 6412 5842 6540 2091 29 17 6376 * 2322 322 0 * 8474 1000 2295 G 30 4836 5723 4739 6183 6539 454 6673 * 6586 6390 * * 5780 4231 * * 6251 4742 * * 30 48 4932 * 1917 444 * * 8498 2261 0 P 31 4036 6183 3809 2771 4909 4431 6622 5859 2811 4900 * 4028 3483 4564 5295 5000 3430 4273 * 5049 31 28 5679 * 2947 200 * * 8498 1636 0 I 32 6678 5519 5574 5440 5781 * * 1571 6184 3217 6542 * 5768 * * * 5363 1374 * 6748 32 28 5686 * 3360 148 * * 8497 1665 0 S 33 4197 6749 6491 2985 4908 5723 4834 4058 2957 4212 6397 4987 6132 4253 3703 3547 3245 3460 * * 33 20 6200 * 3000 193 * * 8497 1000 0 Y 34 5023 7038 2953 3521 5731 5185 4505 4841 3227 6397 6750 3223 6132 6184 3465 2836 4966 4043 6535 5443 34 47 4971 * 431 1953 * * 8497 2318 0 V 35 4886 3920 5047 * 4627 5980 3923 2118 3983 3858 5448 6483 5584 6393 3805 5608 * 2317 5987 6680 35 0 * * * * * * 8497 0 0 V 36 3855 5966 4607 5701 4964 5685 4722 4362 3233 4046 * 3719 6200 5245 3124 3951 4579 3216 4906 3803 36 27 6468 7120 0 * * * 8497 1000 0 V 37 6688 5333 * 5512 3437 6511 * 2383 5389 2242 3345 6393 * 6261 5488 6680 3333 3301 6750 4383 37 22 7117 6962 1585 585 0 * 8498 1000 1000 M 38 5062 * 4843 * 4070 3542 5419 2929 4063 3086 3656 4926 3821 5616 3748 3891 5120 3835 * 6192 38 156 3286 * 2463 289 * 0 8495 4799 1000 P 39 5050 6330 4331 3931 5463 4681 5102 5674 2487 5258 5743 5199 3363 5647 1975 4189 4518 * * 6451 39 89 4062 * 2303 327 0 * 8487 3410 1000 K 40 5738 5774 3291 4350 6129 3266 4667 5470 2876 4437 5438 3084 5415 4569 3995 2977 4946 * * 5609 40 130 3537 * 2727 236 * * 8490 4246 0 K 41 5747 5782 4793 4995 * 4800 4251 5682 2032 5699 5779 3758 4112 4291 2205 4523 4600 6402 * 6676 41 143 3408 * 2468 288 * * 8490 4516 0 R 42 4809 6538 6854 5071 6393 1675 3642 * 4467 6746 5479 2565 4705 5119 4022 5416 4382 6612 5768 4822 42 113 3906 6887 2028 406 * * 8490 3849 0 Q 43 5454 4265 6837 6390 2766 * 5923 4654 4071 5398 3705 5125 * 2793 4744 5104 3904 4139 5666 2654 43 72 4763 6400 2364 312 0 * 8491 2429 1000 A 44 935 4036 * * * 2030 * 6451 4763 * * * * * * 5086 4951 4382 * 6244 44 24 5923 * 2585 263 0 * 8475 1694 1000 L 45 6099 * * * 948 * 3798 4534 * 2460 * * * * 6803 6677 6676 7561 6576 2990 45 0 * * * * * * 8490 0 0 V 46 3627 6661 * * * * * 2066 * 3150 4388 * * * * * 5965 1017 * * 46 0 * * * * * * 8490 0 0 E 47 5190 * 4618 1676 5955 5303 6722 6634 5160 4915 5606 5099 * 3050 3327 3989 3042 5265 * 5933 47 0 * * * * * * 8490 0 0 F 48 * 6136 * 6099 756 * * 5955 * 4763 2865 * * * * * * * * 2406 48 14 * 6677 * * * * 8490 0 0 E 49 3950 * 2785 2270 5621 3617 5011 4464 3332 5488 * 6514 4778 4996 4445 4300 5297 3840 * 6333 49 18 * 6338 * * 0 * 8481 0 1000 D 50 6389 6548 2386 3422 5935 * 5463 6745 4061 * * 2977 * * 4953 2207 2398 6625 * 6819 50 0 * * * * * 0 8483 0 1000 V 51 4006 * * 2879 4989 * 5010 3222 3871 3206 * * 3128 5476 3490 5734 3943 2923 6166 * 51 0 * * * * * 0 8483 0 1000 L 52 4012 * 3065 1525 * 5057 6896 * 4012 5624 6624 4201 6869 3857 4032 3695 4341 6711 * 6504 52 0 * * * * 0 * 8483 0 1000 G 53 2705 3966 2579 2781 * 5215 5572 * 4764 6905 6368 4230 * 4870 * 2528 4172 4692 * 6712 53 0 * * * * * * 8489 0 0 A 54 426 6648 * * * * 5948 6190 * 6452 * * 4770 * 6537 3612 5567 4203 * * 54 28 6420 7101 1000 1000 * * 8489 1000 0 C 55 4045 6922 4658 2654 6944 * * 2772 2873 5982 6528 5171 * 2852 4347 4392 4438 3607 * 5397 55 0 * * * * * 0 8488 0 1000 N 56 2416 6610 4451 3757 6358 * 5677 6258 2672 4700 4657 4123 * 4581 3460 3329 3953 4640 * 6853 56 17 6408 * 0 * 0 * 8488 1000 1000 A 57 849 4196 * * 4061 * * 5452 * 4148 3628 * * * * * 4485 3446 5490 6421 57 35 6067 6769 0 * * * 8489 1000 0 V 58 6248 5044 * 5939 4654 5946 5168 2610 4329 2031 3516 * * * 4889 * 6341 2160 * 4612 58 49 5584 6345 1930 439 * 0 8487 1702 1000 N 59 3858 6100 3046 2794 * 5613 5634 5624 2901 6398 6113 2771 * 3129 3538 4584 5096 6350 * * 59 80 6407 4577 0 * 962 1039 8395 1000 1677 Y 60 2188 * 4347 3213 4365 5709 4226 6559 3678 6279 5480 4510 * 5005 3701 3726 4540 5267 * 3608 60 25 * 5882 * * 1281 765 8376 0 3187 A 61 3473 4375 6371 5903 3368 6289 6385 4795 6794 1414 3124 * * 6362 6429 5610 4566 6869 * 3619 61 147 5288 3809 1374 703 742 1314 8379 1786 3104 A 62 5718 * 4902 4168 * * 2770 4884 3090 4869 6136 2509 5520 2722 3531 4258 4115 * * * 62 35 6161 6636 0 * 2963 198 8366 1000 4350 D 63 5999 * 4505 3756 5868 1849 4672 6333 3983 3166 6371 3008 * 4851 5420 4277 3478 6728 * * 63 77 * 4273 * * 0 * 8368 0 4304 N 64 4749 * 4755 4302 5582 6433 3145 6501 2912 5699 6924 2198 6463 4923 3391 4979 4237 3587 * 4939 64 126 * 3575 * * * 0 8415 0 3278 Q 65 5255 6495 5474 4541 * 2279 5872 6378 4006 * * 3704 2325 3529 6202 3145 3566 6324 * 6225 65 27 * 5744 * * 868 1145 8353 0 5006 I 66 3977 6279 6583 5293 3310 6882 * 2524 5010 2436 4923 5258 4906 5560 * 5032 4221 2690 6385 5386 66 15 6557 * 0 * 203 2928 8377 1000 3965 Y 67 5008 * 5076 3326 3348 4829 3664 3739 3752 3564 4713 4241 5075 5793 5674 3903 3896 4453 * 4167 67 70 * 4401 * * 0 * 8409 0 1000 I 68 5945 * 5615 4152 3481 4601 6058 2047 5511 2420 5448 * 6353 5400 * 5314 * 2383 6126 5599 68 15 * 6578 * * 2234 345 8381 0 3180 A 69 3970 5199 2868 3747 6545 2295 4127 * 3927 4028 5416 3904 4604 4520 3573 5613 * * * 5694 69 36 5346 * 0 * 739 1319 8382 1651 3066 G 70 6758 6635 2959 5768 * 802 * * 5633 6504 6398 3217 6089 * 6384 3795 6498 * * * 70 82 4709 5875 596 1563 0 * 8396 2807 1747 H 71 6521 5416 6838 6363 * 5334 3367 * 2176 * 5557 4533 4741 5254 1572 5595 4907 5870 6371 4208 71 28 5706 * 0 * 944 1058 8411 1636 1696 P 72 6864 6997 6614 3898 6465 6710 4635 5780 2884 4997 5714 3955 2224 4352 2728 4423 3476 5248 * * 72 21 6113 * 2000 415 0 * 8386 1000 1000 A 73 4511 5740 * * * * * 1854 * 1662 3169 * 6457 * * 6533 * 2337 * 6194 73 0 * * * * * * 8392 0 0 F 74 6835 * 6390 5662 4311 5578 3658 3695 2688 4575 4649 3879 * 3615 2549 5688 5144 4123 * 3850 74 0 * * * * * * 8392 0 0 V 75 4079 5793 * * 4436 * * 2169 * 2907 5410 * * * * * * 1008 * * 75 0 * * * * * * 8386 0 0 N 76 4971 4659 2924 2543 6527 4350 5429 * 3528 6842 * 3228 * 3030 4337 3230 5021 6791 6446 6618 76 14 6736 * 2000 415 * * 8372 1000 0 Y 77 6307 * * * 1744 * 5511 4610 5436 3894 6695 * * 6672 6740 * 6869 4593 3129 1546 77 0 * * * * * * 8370 0 0 S 78 1345 6257 * 6445 6367 4292 * * 5791 6251 * 6339 6423 * 5876 1432 4101 5839 * * 78 51 4854 * 779 1261 * * 8297 2213 0 T 79 5293 * 3277 4093 6364 * * * 1701 6485 * 3079 * 4853 2869 4423 2939 6068 * * 79 0 * * * * * * 8254 0 0 S 80 4269 * 4167 4635 * * 3488 * 4710 5141 * 3949 3579 3747 3028 1985 4049 * * 4719 80 23 5986 * 1000 1000 * * 8126 1000 0 Q 81 * * 3945 3695 * * 6072 * 1769 * * 3301 * 2340 2971 3904 5149 6213 * 6103 81 0 * * * * * * 8056 0 0 K 82 5674 5819 3766 1976 * * 3702 5870 3489 * * * 6044 3113 3064 2521 5179 * * * 82 0 * * * * * * 7779 0 0 I 83 4956 * * * * * * 1312 5399 1616 4796 * * * * * 5000 2758 * * 83 0 * * * * * * 6990 0 0 S 84 * * * * * * * * * * * 1650 * * * 1665 1450 * * * 84 0 * * 0 * * * 5440 0 0 //