HHsearch 1.5 NAME c3pgwV_ FAM FILE c3pgwV_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3pgwV_.a3m DATE Fri Jan 11 00:06:36 2013 LENG 103 match states, 103 columns in multiple alignment FILT 115 out of 227 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.2 EVD 0.4500 0.5339 SEQ >ss_dssp CCCCSSTTTSCSSTHHHHHHHHHHSSTTHHHHHTTSSCCCCEECCSSSCBEECCEEEECTTCCEEESSCCEECTTTCCEECCSSEECCTTTCCCEECCCC CCC >sa_dssp ECEEEEDEEBEEECDEDCDEDCDECEECDBCDBADEDDCDBCBCCCEEDDADBCADDCDEEDCBCACDADBECEEEEEEDECDDCECECECCEDDDDECE EEE >ss_pred CCCCCCHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEEEECCCCEEECCEEEECCCEEEEEECCCC CCC >ss_conf 9434833224956543200011243818999999857986999982898899999978360114886328985246621242779995891999972712 269 >Consensus xxxxxxkxxxxxxexxxxexxxxxxgPLxxLxxaxxxxxxVxVxLrxxxxxxGxLxxfDxxmNlvLxdaxExxxxxxxxrxlgxixiRGdnVvlIxxnpx ixx >c3pgwV_ SLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVNKDRYISKMFLRGDSVIVVLRNPL IAG >UniRef50_Q54HH8(144-254:257) Small nuclear ribonucleoprotein Sm D-like protein n=1 Tax=Dictyostelium discoideum RepID=SMDL_DICDI E=2e-13 s/c=0.69 id=27% cov=90% ----RKKNTNEDHKILKNISNKFTDGPLSLLKRALESKSKIKVMIRGTNCIRGYCRgyiiAFDKHMNIILRDVEEEYdllkslpstrnqnqpIQPKIKRY YGQLFIKGDTVVSVI------- >UniRef50_C1BTR3(4-87:104) Small nuclear ribonucleoprotein E n=3 Tax=Coelomata RepID=C1BTR3_9MAXI E=8e-11 s/c=0.81 id=21% cov=68% --------------------------PINLIFRYLQNRTRVSVWLyeNVNTRIEGHIVGFDEYMNLVLADAAEVHVKRGTTKNVGTIMLKGDNITLI--- ----- >UniRef50_Q06406(3-82:86) U6 snRNA-associated Sm-like protein LSm6 n=8 Tax=Saccharomycetaceae RepID=LSM6_YEAST E=0.0004 s/c=0.57 id=27% cov=43% ----------------------------------------------------GRLESIDGFMNVALSSATEHYESnnnKLLNKFNSDVFLRGTQVMYI-- ------ >UniRef50_A0RYZ2(35-103:106) Small nuclear ribonucleoprotein n=1 Tax=Cenarchaeum symbiosum RepID=A0RYZ2_CENSY E=1e-08 s/c=0.88 id=21% cov=65% --------------------------PLTALQKSTKK--AVTVRLKNETEYKGKMENVDSYMNLIMTDAEE-FHDSKVVANYGRVIVRGNNVLFI----- --- >UniRef50_A8PYV0(99-214:220) Sm protein n=1 Tax=Brugia malayi RepID=A8PYV0_BRUMA E=2e-07 s/c=0.49 id=25% cov=75% -----------------------QQGPMKRLEECMEQGHPVRISLRGrnsvNSSIQAKIIAFDKHWNLLIRDGDESFnppmnmkrrttksihavgpyqys esqcedregkTKTLWQRHLPCSLIRGDDIVLISVSP---- >UniRef50_C5KKH0(26-126:139) U6 snRNA-associated protein, putative n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5KKH0_9ALVE E=7e-11 s/c=0.68 id=24% cov=86% ------KHRADREDVDTGDHHRSSIRP-SVIDLERLMHQRVTVKLTGGREVSGVLKGFDPVPNLVLDESIEYLRDPEdpyklsgKTRNLGLLVARGTSVV LV-------- >UniRef50_A9CRN0(13-106:136) U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CRN0_ENTBH E=3e-10 s/c=0.70 id=22% cov=88% -LINNDKHTA----IQTIENNTSNLASIDLMEYSSYVDKNVVVILKDNSLLYGTLKSYDQYNNISLNYAVQRIFHNNQyaEKMIGFIVIRGDTIVMI--- ----- >UniRef50_A0CSI7(6-76:128) Chromosome undetermined scaffold_26, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0CSI7_PARTE E=7e-08 s/c=0.82 id=26% cov=70% --------------------------PLSLLLTA--KGSDVVIEVKAGDTYDGKLELLDKFMNVKLTNVKHTSKDGNSFHGIKELLIKGNSIKYFRLNP- --- >UniRef50_Q55EX5(1-88:97) Probable U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=Eukaryota RepID=LSM5_DICDI E=1e-10 s/c=0.77 id=22% cov=83% ---------MSEVENSNTVDLQSQLLPLELIEKCI--GSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTeyEYTPEGLKTVKLDNILLNGNHVCLLV-- ----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 1419 0 0 L 2 * * * * * * * 2479 * 285 * * * * * * * * * * 2 0 * * * * * * 2581 0 0 L 3 * * * * * * * 1353 * 1135 2706 * * * * * * * * * 3 0 * * * * * * 2851 0 0 N 4 * * 2692 * * * * * * * * 942 * 2543 * 2706 * * * * 4 0 * * * * * * 2851 0 0 K 5 * * * * * * * * 1658 * * 2486 * 3083 1933 3003 * * * * 5 0 * * * * * * 3450 0 0 P 6 * * 2486 * * * * * 2676 * * 3003 888 * * * * * * * 6 0 * * * * * * 3450 0 0 K 7 * * * 3268 * * * * 532 * 3361 * * * * * * * * 3221 7 0 * * * * * * 3834 0 0 S 8 * 2383 3486 3618 * * 1657 * * * * 3131 * * * 2897 3797 * * * 8 0 * * * * * * 4076 0 0 E 9 * * * 953 * * * * * * * * * 3614 3235 3665 2205 * * * 9 0 * * * * * * 4236 0 0 M 10 1943 * 3039 * * * * * 3814 4140 1669 3483 * * * * * 3532 * * 10 149 * 3348 * * * * 4492 0 0 T 11 * * 3704 2929 * 3903 * * * * * * * * 2843 1794 1749 * * * 11 0 * * * * * 0 4559 0 1000 P 12 * * 3748 2264 * * * * 4148 4646 * 3010 2054 3973 2945 4001 * * * * 12 0 * * * * * 0 4559 0 1000 E 13 4431 * 3026 2474 3934 * 3804 4437 4695 * * 4050 * 3803 * 2566 3956 3970 * * 13 107 * 3803 * * * 0 4606 0 1000 E 14 * * 2897 1144 * * * * 3723 * * 3851 3794 2350 * * * * * * 14 0 * * * * 1000 1000 4512 0 1753 L 15 * * * * * * * 2293 4065 2538 4387 3238 2439 4229 4038 4505 * 3887 * * 15 0 * * * * 0 * 4805 0 1000 Q 16 2257 * 4088 3269 * 4107 * * 3512 3651 * 4613 4516 2504 4283 4364 4567 * * * 16 0 * * * * * * 5086 0 0 K 17 4429 * * 2689 * * * * 1710 * * 3462 4642 4314 3325 * 2238 * * * 17 62 * 4567 * * * * 5086 0 0 R 18 4216 4957 * * * 2626 * 3886 4550 2775 4037 4290 4281 3527 5297 * 2747 * 3818 * 18 0 * * * * * 0 5049 0 1000 E 19 * * 4111 830 * * * 4389 4917 * 4367 4192 * 4657 * 4113 * 4339 4358 * 19 0 * * * * * 0 5110 0 1000 E 20 * * 3070 1618 * 5002 4111 * 4917 4322 * 3951 4192 3609 * 2825 4624 * * * 20 0 * * * * * 0 5110 0 1000 E 21 4295 4328 4917 2196 4843 * 4111 4113 3437 4339 4624 3153 4476 * 3193 * 4367 * * * 21 0 * * * * * 0 5110 0 1000 E 22 5203 * 4280 1741 * 4250 * * 1769 4615 * 5063 * 4512 4178 * 3232 * * * 22 0 * * * * 0 * 5126 0 1000 F 23 4587 * * * 2395 * * 4608 2599 2757 4881 * 5097 * * 1737 * * * 4285 23 0 * * * * * * 5138 0 0 N 24 * * * 4772 4023 4372 * * 3605 * * 1860 4565 2841 4860 2661 3040 * * * 24 102 * 3873 * * * * 5118 0 0 T 25 * * 4959 2781 * 4902 5324 3694 3843 3479 3740 * * 3805 4698 4900 2350 3149 * * 25 0 * * * * 0 * 5140 0 1634 G 26 3101 * * * * 561 * 4945 5150 4028 * * * 4557 4602 * * * * * 26 0 * * * * * * 5352 0 0 P 27 * * * 5483 * * * * * * * 4593 144 * * 5006 * * * * 27 35 * 5375 * * * * 5638 0 0 L 28 * * * * 4195 * * 2992 4942 676 3096 * * * * * * 5503 5480 * 28 48 4942 * 1000 1000 0 * 5628 1283 1000 S 29 3988 * 3164 3732 * 3396 5621 * 3070 5501 4906 5039 * * 6256 1456 5911 * * 4808 29 0 * * * * * * 5677 0 0 V 30 4191 5877 * 6054 4390 * 5972 3923 * 1527 6459 * 6094 5733 4874 6172 5769 1761 * 5036 30 0 * * * * * * 5677 0 0 L 31 * * * * 4634 * * 1981 * 712 5085 * * * * * * 4417 * 5668 31 30 * 5609 * * * * 5677 0 0 T 32 5796 * 3487 3601 4236 5791 4440 * 3019 5513 3764 4010 * 3629 3594 5723 3188 3489 6150 5885 32 0 * * * * * 0 5636 0 1000 Q 33 4410 * 5320 4018 6209 * * 4373 2684 3245 5117 3545 * 4319 3238 3060 3522 4836 * 5015 33 20 * 6200 * * * 0 5636 0 1000 S 34 1572 3563 * 5391 4814 * * 5877 * 4509 * 5752 * * * 1847 4917 4586 5721 3866 34 273 * 2538 * * 1022 978 5630 0 1686 V 35 5368 5660 * * 4350 * * 2850 5875 2532 2567 * * 5600 4524 4040 4221 2355 * 4809 35 153 * 3315 * * 1944 434 5443 0 3144 K 36 4698 * 4989 2268 * 3596 * * 2219 5107 * 5319 * 2896 4515 5843 5417 4891 * 3080 36 18 * 6317 * * 897 1111 5612 0 3482 N 37 5705 * 3389 3034 * 5615 3565 * 2540 4491 5326 2582 * 3249 3813 5833 5476 4889 * * 37 136 * 3475 2585 263 183 3066 5590 1000 2812 N 38 * * 3401 * * 2383 5667 * 2759 * 6077 1544 * 5202 2633 * * * * * 38 50 * 4879 * * 2604 259 5461 0 2534 T 39 4432 * * 4878 * 6504 3544 5886 3080 * * 6080 * 3007 6057 2898 1537 4598 * 6218 39 22 * 6021 * * 687 1400 5486 0 2976 Q 40 6156 * 5415 4108 * * * 5524 3482 4623 * 5292 2864 2058 2411 3825 6258 3974 * 6119 40 0 * * * * 0 * 5432 0 2343 V 41 5729 * * * * * * 2713 * 3928 3290 * * * * * * 598 * * 41 0 * * * * * * 5530 0 0 L 42 * 6232 * 6430 3393 * * 4337 4364 1516 4412 6383 * 5379 3522 3683 3888 3924 5440 5170 42 12 * 6975 * * * * 5532 0 0 I 43 * 6169 * * * * * 1434 * 3669 6439 * * * * * * 927 * * 43 0 * * * * * 0 5534 0 1000 N 44 5753 * 6817 3033 * * 3750 3800 2545 5452 4783 3534 * 4791 3497 3688 4389 4424 4090 4964 44 17 * 6439 * * 0 * 5534 0 1000 C 45 * 3861 * * 6707 4760 * 4143 * 630 5720 * * * * 5024 3601 4327 * * 45 50 4889 * 1000 1000 * 0 5533 1705 1000 R 46 4456 5228 * * 6454 * 6641 5927 1551 * 7063 3560 * 4764 1304 * 6086 * * * 46 0 * * * * 0 * 5528 0 1000 N 47 4537 * 2298 6487 5668 2482 5159 6597 6545 * * 1394 * * * 3676 6413 6486 * 6257 47 39 5213 * 2000 415 * * 5560 1609 0 N 48 4859 * 3560 6680 6416 1403 * * 6779 7042 * 1534 * 5415 6263 4463 5255 * * 6496 48 0 * * * * * * 5565 0 0 K 49 * * 5939 3211 * 6276 4495 5035 2091 4142 * 5471 * * 1592 3983 4189 5360 * * 49 13 6815 * 0 * * * 5593 1000 0 K 50 5861 6078 5324 2391 6506 4128 6723 5739 2113 4037 4714 6056 * 5716 3987 4319 2806 5103 * 7255 50 24 5947 * 1497 631 * * 5593 1643 0 L 51 * * * * 3137 * 5908 2151 * 1846 5491 * 4814 * * * * 2899 * 2519 51 0 * * * * * * 5596 0 0 L 52 * * 5943 4088 6177 * 6351 3291 3737 2995 6588 4553 4814 4825 2525 4553 4006 2663 * 4800 52 16 6503 * 1000 1000 * * 5596 1000 0 G 53 3278 * * * * 157 * * * * * * * * * * * * * * 53 11 7105 * 2000 415 * * 5603 1000 0 R 54 * * 7153 4715 5705 * 3024 3811 2588 4827 6530 4716 * 5862 3271 * 2282 3140 * 4288 54 99 4666 5229 2000 415 * * 5736 2116 0 V 55 6388 6089 * * 5629 * * 3422 * 570 4898 * * * * * * 2712 * * 55 17 * 6388 * * * 0 5679 0 1000 K 56 5472 * 5777 3062 6287 * 5496 3354 2310 4520 4562 5539 * 5149 2526 4878 5117 2911 * * 56 33 5482 * 2000 415 * 0 5666 1429 1278 A 57 1676 * 6464 * 5800 2073 * 6582 6580 3464 5508 3447 * * 6941 2791 4999 6513 * * 57 0 * * * * * 0 5741 0 1278 F 58 * 4755 * * 1280 * * 3528 * 4062 * * * * * 3758 4970 3638 * 2195 58 13 6837 * 2000 415 * 0 5981 1000 1278 D 59 * * 126 5514 * * * * * * * 5070 * * * * 4954 * * * 59 0 * * * * 743 1313 5798 0 1278 R 60 4751 * 4142 3336 * 3108 5528 5123 2829 6605 5575 3495 6126 2506 3691 3949 5187 5622 * * 60 0 * * * * * 0 5886 0 1000 H 61 6308 6838 * 5177 2609 * 1283 * * 5884 6585 5524 * * 6543 6505 4129 6126 4583 2379 61 0 * * * * * 0 5886 0 1000 C 62 4146 4494 * * 4123 4650 5100 5248 * 3729 1160 6069 6126 * * 4360 6418 4181 3827 6888 62 0 * * * * * 0 5886 0 1000 N 63 * * 5177 * * * * * * * 5100 212 * * * 6459 3864 * * * 63 0 * * * * * 0 5886 0 1000 M 64 * * * * * * * 2206 * 1327 2943 * * * * * 5575 2598 3864 * 64 0 * * * * * 0 5886 0 1000 V 65 4369 4045 * * 4509 * 5575 2475 6048 3967 6830 5760 * 6968 6580 6069 4332 1163 * 6600 65 0 * * * * * 0 5886 0 1000 L 66 * * * * 6526 * * 3934 * 329 4336 * * * * * * 6651 3879 * 66 44 5067 * 1585 585 * 0 5886 1000 1000 E 67 5740 6454 2685 2171 * 5506 5696 6963 2720 4814 * 4948 * 5045 3698 2910 3592 * * * 67 0 * * * * * 0 5886 0 1000 N 68 5138 * 1340 3012 * 6516 5431 * 3909 * * 2180 * 6625 5889 3503 * * * 5967 68 34 5430 * 1084 920 * 0 5989 1619 1000 V 69 1477 2729 * * * 5953 * * * 5111 * * * * * 4123 3681 1886 4689 * 69 5 * 8178 * * * 0 5989 0 1000 K 70 6794 6123 4408 2286 5998 3933 6765 3920 3058 7020 * 6297 * 5634 4954 5675 2898 2477 * 4577 70 43 7339 5433 1000 1000 * 0 5786 1000 1510 E 71 6548 5797 6336 489 * * 6217 6576 5787 3862 * * * 3689 4439 6348 * * * * 71 48 5960 5925 690 1396 * 0 5768 1617 2599 M 72 * * * 5589 4309 * 6518 2897 4316 3070 5204 5357 6460 5371 3113 3915 2647 3343 6707 3687 72 140 4706 4206 1513 623 1108 900 6286 1450 3010 W 73 4575 * 3700 5637 3732 4344 4444 3178 5772 5031 4675 6841 5995 * 4846 3134 4516 4040 3705 2860 73 83 4411 6819 4009 93 724 1342 6005 2563 3041 T 74 4311 * 4500 3731 4230 5579 3999 4167 3115 7005 * 4405 3347 5433 3088 5123 2956 4811 * 4835 74 97 3936 * 3580 126 655 1455 5719 2331 2467 E 75 4426 * 2395 2237 * 4086 5529 5346 3136 6898 * 5076 * 4932 5330 3729 3526 3745 * * 75 115 4095 5810 2898 208 1474 644 5710 2335 1442 V 76 5728 * 4526 5175 * 2371 * 3692 3212 4644 5801 4045 3422 6208 4524 4119 4263 2709 * * 76 9 7302 * 2000 415 1696 532 5734 1000 1989 N 77 5032 * 3940 2275 * 4139 * 4990 3486 4325 * 2113 5804 4875 5601 3384 4295 5658 * * 77 150 3877 5026 2620 256 0 * 5760 2629 1651 K 78 4629 * 4347 3339 6270 * * 4031 1568 5096 6121 6233 4757 5009 3691 4381 4394 3565 5812 * 78 153 3416 7142 3547 129 * 0 5754 3140 2278 D 79 4489 * 4346 1933 3783 3956 6368 4929 3328 7032 * 5143 6567 4682 4128 5961 3516 3329 * 5857 79 140 4168 4757 3768 110 0 * 5758 2547 2375 R 80 3569 4423 * 4149 6177 * 6161 4986 2622 * * 5085 * 4879 1319 * 5947 4058 5466 5166 80 64 5865 5253 1000 1000 401 2042 5736 1000 2096 Y 81 6859 7441 4694 5502 3422 5147 3332 * 2923 6984 5018 3200 4769 5059 3361 4437 3702 4874 * 3272 81 46 6863 5462 2000 415 592 1571 5756 1000 2225 I 82 6531 7017 6344 5546 5533 6974 5509 2210 5923 1576 4824 6370 * * 5783 5840 * 2916 5308 3516 82 16 6526 * 0 * 1049 953 5714 1000 1681 S 83 * * 3513 4739 * 990 6287 * 4491 * * 5290 3203 6207 5787 2753 * * * * 83 0 * * * * 0 * 5718 0 1000 K 84 6829 4847 3903 3280 5166 6305 * * 2390 3225 3796 4764 * 4424 2910 5216 3307 5300 * 7198 84 34 5412 * 1000 1000 * * 5749 1622 0 M 85 6313 5199 * * 4802 * 6428 2351 * 1837 3096 * * * * 5253 5833 1981 * 5447 85 13 6798 * 1585 585 * * 5749 1000 0 F 86 * * * * 1376 * * 3534 * 1911 4841 * * * * * * 2803 * 3566 86 0 * * * * * * 5749 0 0 L 87 5849 * * * 6304 * * 1419 * 1419 * * * * * * * 2170 * * 87 19 6272 * 0 * * * 5749 1000 0 R 88 * 4651 * * * * * * 3607 * * 4457 * * 308 6315 6383 * * * 88 0 * * * * * * 5718 0 0 G 89 * 5400 * * * 131 * * * * * * * * 4651 5439 * * * * 89 0 * * * * * * 5718 0 0 D 90 * * 1115 2703 * 4672 * * * * * 2043 * * * 4014 4605 * * * 90 0 * * * * * * 5718 0 0 S 91 4982 6032 5827 5859 6533 5214 5479 * * 4369 6365 1284 * 3551 * 2488 3021 * * * 91 0 * * * * * * 5714 0 0 V 92 6206 * * * * * * 1425 * 5372 5844 * * * * * * 804 * * 92 0 * * * * * * 5714 0 0 I 93 4017 6167 * 5994 * 5493 * 1871 4549 2751 6010 * * * * 6568 4070 1572 * * 93 0 * * * * * * 5468 0 0 V 94 5355 6373 * * 3025 * * 4164 * 1402 3468 * * * 6610 5126 4547 3615 5927 2874 94 0 * * * * * * 5638 0 0 V 95 * * * * 5248 * * 995 * 3116 5159 * * * * * 6097 1671 * * 95 46 4999 * 0 * * * 5642 1000 0 L 96 4928 * * * * * 4611 3674 * 2648 * * 3817 * 3388 2561 4750 1888 * 4470 96 0 * * * * * * 4902 0 0 R 97 * * * * * * * * 1949 3087 3365 * 2523 3600 2539 4319 * 4388 * * 97 0 * * * * * * 4575 0 0 N 98 4316 * * 4122 * * * 3045 * 4177 * 872 4448 * * 3458 4938 * * * 98 0 * * * * * * 4403 0 0 P 99 * * 3829 2982 * * * * * * * * 707 4211 * 4767 3325 * * * 99 0 * * * * * * 4265 0 0 L 100 * * * * * * * * 3886 1472 * 1873 * * 3445 * * 2273 * * 100 0 * * * * * * 3468 0 0 I 101 * * * * * * * 226 * 2784 * * * * * * * * * * 101 0 * * * * * * 2890 0 0 A 102 472 * * * * * * 1841 * * * * * * * * * * * * 102 0 * * * * * * 2437 0 0 G 103 * * * * * 0 * * * * * * * * * * * * * * 103 0 * * 0 * * * 2069 0 0 //