HHsearch 1.5
NAME  c3oakD_
FAM   
FILE  c3oakD_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c3oakD_.a3m 
DATE  Wed Jan  9 22:46:26 2013
LENG  29 match states, 29 columns in multiple alignment
FILT  1 out of 5 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.0 
EVD   0.4931  3.6577 
SEQ
>ss_dssp
CTTGGGHHHHHHHHHTTSCTTHHHHHHHC
>sa_dssp
EEEEEEEEDDDEEEEDEEEEECECEEEEE
>ss_pred
CCCHHHHHHHHHHHHCCCCCCEEEEEECC
>ss_conf
95135678889987428875226887449
>Consensus
fthmsdkidemydifgdghdydwaleien
>c3oakD_
FTHMSDKIDEMYDIFGDGHDYDWALEIEN
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
F 1    *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1000	0	0	

T 2    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	2
       0	*	*	*	*	*	*	1000	0	0	

H 3    *	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1000	0	0	

M 4    *	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1000	0	0	

S 5    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	5
       0	*	*	*	*	*	*	1000	0	0	

D 6    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1000	0	0	

K 7    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1000	0	0	

I 8    *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1000	0	0	

D 9    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	9
       0	*	*	*	*	*	*	1000	0	0	

E 10   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1000	0	0	

M 11   *	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1000	0	0	

Y 12   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	12
       0	*	*	*	*	*	*	1000	0	0	

D 13   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1000	0	0	

I 14   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1000	0	0	

F 15   *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1000	0	0	

G 16   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1000	0	0	

D 17   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1000	0	0	

G 18   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	18
       0	*	*	*	*	*	*	1000	0	0	

H 19   *	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1000	0	0	

D 20   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1000	0	0	

Y 21   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	21
       0	*	*	*	*	*	*	1000	0	0	

D 22   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1000	0	0	

W 23   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	23
       0	*	*	*	*	*	*	1000	0	0	

A 24   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1000	0	0	

L 25   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1000	0	0	

E 26   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	26
       0	*	*	*	*	*	*	1000	0	0	

I 27   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	27
       0	*	*	*	*	*	*	1000	0	0	

E 28   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	28
       0	*	*	*	*	*	*	1000	0	0	

N 29   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	29
       0	*	*	0	*	*	*	1000	0	0	

//