HHsearch 1.5 NAME c3o8xB_ FAM FILE c3o8xB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3o8xB_.a3m DATE Thu Oct 7 14:37:00 2010 LENG 96 match states, 96 columns in multiple alignment FILT 110 out of 755 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 8.0 EVD 0.4502 -0.3783 SEQ >ss_dssp CBCCEEEEEESSCCCTTCCEEEEEEEEEEBSSCCEEEEEETTEECSCCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECTTCSSCEEEECCC >sa_dssp EEEADBECDCEDEDEDEEEBCABACABDADDDECDCDABDDEEDCEECEDDEDDDDDDEBCCBCADBEBDACEECDBBADACBECCEEDDCCEBEE >ss_pred CCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCEEEEEEECCEECCCCCEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCEEEEECC >ss_conf 976679997068753787289999997676752299999878982552012366158624999999999267778799999917788868999509 >Consensus xxpPxvxixxxxxxxxgxxxtLxCxaxgfxPxxixvxWxxxgxxlxxxxxxxxxxxxdxtyxxxsxlxvxxxxxxxytCxVxhxxlxxpxxxxwxx >c3o8xB_ QKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHASMAEPKTVYWDR >UniRef50_Q9TP04(206-288:388) MHC class I antigen n=1 Tax=Protopterus aethiopicus RepID=Q9TP04_PROAT E=3e-07 s/c=0.67 id=14% cov=88% ---PETKIFRKRRHDG--KYTFSCHASEFFPSALSIKWINIKTNEKKEETAEALPNNDGTFQAWVDIDSDLECARDLVCMITHGNSSE-------- >UniRef50_Q9BZZ2(327-422:1709) Sialoadhesin n=22 Tax=Eutheria RepID=SN_HUMAN E=0.0001 s/c=0.49 id=16% cov=53% ----EVQVSPAGPILENQTVTLVCNTPNEAPSDLRYSWYKNHVLLEDAHSHTLR------------------------------------------ >UniRef50_UPI00017F0C61(480-571:585) PREDICTED: similar to signal-regulatory protein alpha n=1 Tax=Sus scrofa RepID=UPI00017F0C61 E=2e-06 s/c=0.58 id=19% cov=93% --PPTMSIF-EHPVSKNKINV-TCKAKKFYPKGIWLTWLKNGNVSRIDKTLTPTKRRDGLYTVQSSILVNKPheiEDTVLTCQAEQDGQQEVTSK---- >UniRef50_UPI0001BE6214(111-211:213) UPI0001BE6214 related cluster n=1 Tax=unknown RepID=UPI0001BE6214 E=1e-10 s/c=0.67 id=15% cov=99% --APSVFIFPPSDEQLKSgTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDskDSTYSLSSTLTLSKADyekHKVYACEVTHQGLSSPVTKSF NR >UniRef50_UPI0001792168(172-266:1220) PREDICTED: similar to sticks and stones CG33141-PA n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792168 E=0.0001 s/c=0.50 id=17% cov=88% ---------SKLEVQENHEVSIECVARNSKPASRIV-WFRGDEEINPEQRSDNIseetadQTKLKLFTVRSRIKVTAKSNDdrvKYKCEAHHQALSDPLS TT--- >UniRef50_UPI0000D9DD6E(781-867:976) PREDICTED: similar to hemicentin 1 n=1 Tax=Macaca mulatta RepID=UPI0000D9DD6E E=0.0003 s/c=0.53 id=16% cov=91% REAPQVSIhTSSQHFSQGVEVKVSCSASGY--PTPHISWSREGQTLQEDSRIHVDAQG-----TLIIQGVAPEDAGNYSCQATNEVGTDQETVT--- >UniRef50_UPI000175FFA4(468-567:898) PREDICTED: similar to signal-regulatory protein beta 1 n=1 Tax=Danio rerio RepID=UPI000175FFA4 E=2e-07 s/c=0.56 id=19% cov=95% --PPEVSEIQfSEPNEEGGVVTMTAHASHFHPDIITFRWFCEGGELSPVSIPQalaaPRPDAEGFFSAMSQCRLPKAELERGETRVWvtihHTALKQPIT R---- >UniRef50_UPI000194DEE7(227-296:385) PREDICTED: similar to programmed cell death ligand 1 n=1 Tax=Taeniopygia guttata RepID=UPI000194DEE7 E=5e-05 s/c=0.69 id=7% cov=43% ---------------------------------------RNYEDLTDKANTRFETASDQLYHVTSTLTIKSGIDEIFYC----------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Q 1 * * * * * * * * 2083 * * * * 1039 1849 * * * * * 1 0 * * * * * * 5497 0 0 K 2 2731 * 4035 2367 * * * * 2317 * * 4178 * * 2786 * * 2368 * * 2 0 * * * * * * 5868 0 0 T 3 2457 * * 3355 * * * * 4684 * * * 1055 5448 * 2921 4468 * * * 3 0 * * * * * * 7495 0 0 P 4 * * * * * * * * * * * * 30 * * * 5623 * * * 4 0 * * * * * * 7872 0 0 Q 5 5458 * 4747 3167 * * * * 2366 5424 6112 * 5273 2970 3854 3272 3305 2801 5996 6576 5 0 * * * * * * 7897 0 0 I 6 4781 * * * 6267 * * 2546 * 2914 5195 * 4543 * * 6071 5725 882 * * 6 15 6605 * 1585 585 * * 7915 1000 0 Q 7 6539 * 5319 3138 5417 * 4131 4793 3733 4385 * * 5465 3919 4575 2022 2650 5354 5416 5215 7 78 6619 4560 1585 585 * * 7934 1000 0 V 8 5155 * * 4241 4942 5173 * 1966 * 2391 6144 6388 5270 * 6516 5064 * 1711 6169 * 8 104 4381 5550 787 1250 0 * 7971 2493 2445 Y 9 6327 * 6187 4021 1963 3195 6072 3570 * 4390 6476 * 4867 6539 4859 2629 4074 6873 6158 3930 9 114 4282 5337 719 1350 0 * 7944 2650 1102 S 10 4456 * * 6336 6096 * * 6130 6298 4133 * 5867 1484 3586 3946 2569 3020 6181 * 6041 10 85 4129 * 527 1709 0 * 8239 2604 1689 R 11 3470 6335 5540 3801 * 7233 5051 * 3760 3926 6772 5455 2972 4991 2929 2237 4905 4367 * 6426 11 21 6101 * 1585 585 * * 8331 1000 0 H 12 3659 * 4618 2753 * 5059 4083 * 3248 6670 * 3514 3899 4247 4763 2518 4254 4141 * * 12 36 6443 6274 0 * * * 8379 1000 0 P 13 3316 * 4380 3172 * * 6615 5109 * 6406 * 4280 1886 4136 3851 2395 5405 6036 * 6318 13 150 3338 * 1244 791 0 * 8396 4358 1000 P 14 2667 * 6415 4054 5132 4127 5409 4599 * 3068 6417 5047 4126 6656 * 3758 4276 2036 * 5483 14 89 4355 6550 1063 939 * * 8411 2850 0 E 15 4253 * 4457 2300 6768 6776 6533 * 3424 5022 * 4457 4531 4427 4415 3331 3230 3525 6457 4070 15 33 5473 * 1000 1000 0 * 8398 1839 1000 N 16 4546 6598 5096 2351 6603 4407 4592 5557 6474 2657 * 6603 2845 5088 5392 3703 4303 3660 5480 * 16 85 5204 5043 1000 1000 * * 8422 1771 0 G 17 6348 * 6390 4062 * 1153 5048 * 3380 * * 2445 6656 4595 5539 3580 * * * * 17 61 5016 6558 740 1317 1485 637 8397 2264 2212 K 18 4817 * 3071 2405 * 4921 4854 6074 3482 * 6504 5554 5679 2427 4082 3675 4388 4014 * * 18 43 6948 5557 0 * 1559 598 8366 1000 2133 P 19 4965 * 5436 2722 6584 6551 4121 5037 2616 6973 * 4788 3001 4729 5063 2800 3067 5530 * * 19 15 6631 * 1000 1000 410 2016 8393 1000 2546 N 20 2359 * 6766 4767 * 5047 * 5060 * 3561 6483 3923 5580 4147 6179 4569 4797 1544 * 5329 20 21 6093 * 1000 1000 * 0 8417 1000 1000 I 21 5471 * 5715 4797 6728 * 6135 5116 4046 4637 7003 4308 6165 4551 4753 3824 1210 3128 * * 21 28 6953 6505 1000 1000 0 * 8391 1000 1000 L 22 * * * * 3221 * 6492 3326 * 688 4906 * * * * * * 3807 * 4153 22 0 * * * * 0 * 8376 0 1000 N 23 5215 * * 4670 * 5422 7006 3282 4624 3847 4989 4568 * 4434 4380 2801 2123 2861 * 6482 23 29 5630 * 1875 459 * * 8400 1652 0 C 24 4564 113 * * * * * * * 5728 * * * * * * * 6165 * * 24 12 6864 * 0 * * * 8318 1000 0 Y 25 4667 * 4489 5161 4868 * 3006 5631 6817 2390 5474 4909 6817 4142 3584 3213 3632 4254 5146 4810 25 0 * * * * * * 8318 0 0 V 26 1348 6581 * * * * * 2819 * 4255 * * * * * 2888 5381 2038 * * 26 0 * * * * * * 8318 0 0 T 27 4085 * 4104 3507 * 6615 5274 4804 3840 6819 6499 4263 * 5783 3129 2220 2686 6755 5974 4222 27 12 * 6927 * * * * 8318 0 0 Q 28 6429 * 3560 4849 * 1200 4173 6754 3739 5559 * 2788 6091 5781 5114 4171 * 6546 * * 28 30 * 5615 * * 0 * 8319 0 1000 F 29 3433 * 5192 * 1090 2889 * 4826 * 4666 * * * * * 4545 6494 6101 5766 3136 29 104 * 3845 * * 914 1092 8297 0 1669 H 30 4220 * 6596 * 2230 6024 4004 * 3714 4753 * 4209 6428 * 4949 3638 6585 5274 6700 1701 30 17 6428 * 0 * 3082 181 8172 1000 3882 P 31 * * 5250 * * * * * * 6202 * * 182 4944 6187 5442 * 6758 * * 31 54 * 4771 * * 0 * 8174 0 4051 P 32 3054 * 4078 3167 6455 5291 * * 2756 5281 6574 3888 2376 4317 4116 3506 6650 * 6565 6459 32 30 * 5617 * * 950 1052 8313 0 2680 H 33 3112 * 2952 3846 6664 5039 5199 3996 4881 5487 6749 3137 2705 5212 6792 4216 4525 3479 * * 33 129 * 3545 * * 0 * 8312 0 2782 I 34 3128 * * 4842 * * * 1832 6424 2375 5709 4990 3812 5436 6181 5638 5411 2709 6635 * 34 16 * 6489 * * 0 * 8371 0 4164 E 35 4253 * 5173 2738 7087 * 4104 4958 3649 4810 6642 4309 * 3955 3616 3122 2676 4456 5391 6691 35 17 6435 * 0 * * 0 8268 1000 1000 I 36 * * * * 3478 * * 2552 6484 2174 4969 * * 6719 * 6479 6942 1264 * 5073 36 0 * * * * * 0 8268 0 1000 Q 37 6225 * 6281 4395 4110 * 5069 6862 3372 5101 6948 5359 * 3818 3651 2992 2064 5271 3311 5078 37 0 * * * * 0 * 8268 0 1000 M 38 * * * 6420 6396 * * 4585 * 4646 5816 * * 5230 * * * 5745 288 6297 38 37 5861 7001 657 1450 * * 8391 1717 0 L 39 * * 5738 4872 2412 * 5798 3862 3511 2346 4544 4715 * 5303 3552 5350 4055 * 4745 3746 39 25 5884 * 3389 145 * 0 8395 1704 1000 K 40 * 5586 6744 3868 * 4316 4586 5667 1576 3523 6666 4256 * 6166 2289 4874 6808 4516 * * 40 59 5164 6378 1415 678 0 * 8334 2350 1000 N 41 * * 1843 3814 * 3216 6147 6348 4348 * * 1580 * 6689 5779 4285 6625 6565 6613 5481 41 15 * 6610 * * 0 * 8310 0 1000 G 42 6587 * 3610 5905 6163 808 * * 5018 7043 * 3828 * * 4320 3514 4671 6336 * 6987 42 0 * * * * * 0 8323 0 1000 K 43 5180 * 5652 2300 7186 3878 5333 4812 3765 4440 5083 3773 * 2835 4451 4029 3776 3800 * * 43 27 5773 * 2473 287 * 0 8323 1738 1000 K 44 5480 * 5480 2111 * * 6904 3973 3030 4167 7224 3468 2827 6833 4656 3597 5242 4149 * 5517 44 48 5412 6731 2155 367 * 0 8323 1698 1000 I 45 6903 * 5462 5761 5953 5734 * 2354 6327 1528 5127 * 5776 4553 4957 5074 4772 2532 * * 45 55 4996 7361 1289 759 0 * 8311 2745 1741 P 46 4464 * 3868 4082 6136 6733 6048 6371 4300 4517 * 5584 2528 3663 3735 2506 2665 * * * 46 91 4669 5515 1566 594 0 * 8336 2701 1000 K 47 3338 * 3417 2546 * 2699 6646 * 4586 5021 * 4064 3560 3977 4643 3115 5202 * 6763 * 47 62 5019 6501 318 2339 * 0 8303 2585 1632 V 48 4174 6395 3669 3982 5301 3516 5620 4234 4786 4898 5639 4112 5019 4477 4713 2953 4859 2478 * * 48 67 6768 4792 3322 152 1462 650 8155 1000 2166 E 49 4922 * 4997 3214 5688 5857 4587 4462 4643 3911 * 3879 5155 3295 4316 2424 4249 3440 6808 6684 49 0 * * * * 1323 736 8102 0 3333 M 50 * * 4455 4538 4722 6328 4672 5080 3896 4589 4907 3715 4594 4092 4277 3387 2400 4860 * 3280 50 40 5773 6749 1371 705 0 * 8122 1654 2391 S 51 6284 * 4549 5444 4292 4601 4732 4503 4907 4782 6651 3759 3726 5591 5644 2519 1996 4534 * 6726 51 26 6784 6828 0 * 0 * 8312 1000 1000 D 52 6717 * 3409 3234 4783 4191 4590 5291 4188 6734 6482 4299 5735 3084 3621 2844 3457 4391 * 6686 52 94 3989 * 1492 634 0 * 8314 3526 1000 M 53 5024 * 5703 6013 3996 5782 4370 3678 3958 4165 6759 * 2601 3994 6877 3980 3466 2380 7142 6826 53 27 6689 6840 0 * * * 8319 1000 0 S 54 4770 * 5702 4461 6400 6718 6179 4263 5458 2670 5140 5176 4909 3926 2956 3765 3125 3426 6743 4130 54 50 4879 * 2151 368 * 0 8313 2752 1000 F 55 3561 6895 5333 3498 5056 6657 * 4345 4536 3605 6363 * 2242 3779 3578 3706 4817 5332 * 4009 55 14 6707 * 1585 585 * 0 8313 1000 1000 S 56 4330 * 3405 3830 5625 3252 4169 6994 5412 4799 4503 2442 4992 3641 5646 3501 3799 6689 * 6961 56 9 7383 * 0 * * 0 8195 1000 1000 K 57 2820 5241 3003 3458 * 2381 6656 * 4650 5454 * 4390 4295 5292 6822 3114 4228 5817 6472 5593 57 62 4888 6920 321 2324 * 0 8195 2698 1000 D 58 5120 * 1164 4099 * 3804 * * 5236 6377 * 2843 4286 5696 6767 3693 4055 * * * 58 73 6723 4654 0 * * 0 8190 1000 1578 W 59 5266 * 4205 3974 5382 1244 6571 5546 4690 4868 4926 4297 6741 5187 5991 3887 6357 5872 4286 5591 59 45 7053 5432 0 * 2174 361 8157 1000 3146 S 60 5128 * 5521 6520 5443 4388 * * 5576 2459 6546 * 5173 * 4240 2718 1284 * * 6497 60 36 7005 5874 2000 415 2333 319 8115 1000 3480 F 61 6451 6560 * 4158 1588 6235 6348 6673 6503 5191 * * 6390 * 6556 4900 * 5519 5831 1251 61 14 6685 * 2000 415 854 1163 8130 1000 3538 Y 62 4976 5324 4243 6104 5700 6756 4327 6578 5558 5247 5040 4245 5448 2847 3860 1783 3562 5401 * 5227 62 11 * 7047 * * 744 1312 8161 0 2287 I 63 2668 5018 * 6577 5997 * 6915 3236 3695 3200 4180 6510 6677 4573 6757 3905 3866 2290 5767 * 63 0 * * * * 897 1111 8189 0 1755 L 64 5240 * * 5561 3500 6345 4932 3751 6193 2864 5131 6658 * 4507 3901 2670 2496 4398 5651 4556 64 13 * 6823 * * * 0 8200 0 1000 A 65 4018 6338 6045 5538 * 7088 4407 4340 5675 * 6380 5784 * 6798 5758 797 3907 3922 * * 65 28 6671 6717 1585 585 0 * 8195 1000 1720 H 66 4835 * 5085 5731 3717 * 4276 2963 6679 4334 * 6935 * 4157 4614 2943 2456 4526 4199 3535 66 59 5778 5527 476 1832 * 0 8195 1696 1000 T 67 5289 5600 * * * 6818 6351 3199 6800 803 * * * 6888 4519 * 4661 2824 * 6806 67 29 6519 6834 2807 222 546 1667 8167 1000 2248 E 68 4516 * 3869 3355 * 6888 4734 * 3558 5213 5307 4189 4247 4321 3174 3664 2282 5287 * 5128 68 39 5699 7066 1107 900 1036 965 8203 1611 1685 F 69 5306 * * * 3164 6619 * 2593 * 2246 * * * * 6592 5589 4600 1459 * 4634 69 79 5795 4822 998 1002 948 1054 8208 1713 1702 T 70 4498 * 4191 4265 6288 5998 5655 4282 3448 4636 * 4777 3178 5227 5748 3496 2046 3858 6710 5969 70 32 5497 * 961 1040 1893 453 8182 1739 2817 P 71 2825 6290 * 3664 * 5176 5780 * 4430 2691 5528 6934 1698 5431 3678 5339 5239 5896 6313 * 71 145 3387 * 1707 528 0 * 8179 4465 2305 T 72 3395 * 3938 2644 * 3632 * * 4907 * 4802 3813 * 4249 4988 2504 2623 5799 5792 * 72 83 4429 6750 1254 784 * * 8196 2633 0 E 73 5620 6337 1858 2702 6439 * 3589 7052 4781 4036 * 4994 3777 4142 4526 3851 4179 * * 6750 73 52 5414 6389 1207 819 0 * 8256 2185 1000 T 74 3623 * 3588 3771 * 2091 5343 * 4258 5557 6706 3447 * 6603 4629 2732 4301 6815 3891 * 74 42 5110 * 1423 673 * 0 8235 2326 1000 D 75 3268 * 2142 3805 6829 2016 4575 6616 4642 * 3861 4310 * 4706 5526 4526 5835 6703 * * 75 149 3483 6812 1424 673 0 * 8235 4405 1000 T 76 4970 * 5320 2694 * 5299 6730 3795 3487 5163 6691 3381 * 4416 3688 3897 2800 3228 6980 6781 76 112 3748 * 1459 652 0 * 8186 3731 1000 Y 77 * * * * 2520 5571 4633 3613 * 3804 * * 6605 * 5951 * * 3654 * 985 77 25 5851 * 1853 468 * * 8190 1666 0 A 78 4848 * 5231 3756 * 6645 * 4286 4451 6328 6650 * * 4580 5420 2157 1430 3904 * 6964 78 25 5840 * 1585 585 * * 8190 1272 0 C 79 * 62 * * * * * 5564 * * * * * * * * 5571 * * * 79 0 * * * * * * 8190 0 0 R 80 6736 6241 * 3153 6613 * 4782 3910 4144 3652 4415 5207 * 3329 2152 5008 4596 2988 6849 6620 80 0 * * * * * * 8242 0 0 V 81 2365 * * * 6690 6339 * 3276 * 6420 6804 * 6557 * * 6351 5690 721 * 6511 81 0 * * * * * * 8198 0 0 K 82 4086 * 4833 2275 * 4814 5722 5616 3103 5426 5637 6702 * 3033 3424 3989 3168 5584 4913 6433 82 45 5028 * 1524 616 * * 8123 1740 0 H 83 6386 * * * 6467 4579 695 6536 6440 6626 * 2489 * 5476 * 5183 * 5406 * 4920 83 39 5227 * 2418 299 * * 8123 1773 0 A 84 5015 * 4800 2242 6586 3766 * 4480 3830 6697 6287 6373 3073 4554 3938 3111 4615 4393 5341 4930 84 0 * * * * * * 8105 0 0 S 85 1751 * 6631 6322 * 2700 5312 6150 * 5296 6191 6120 * 5297 * 1983 3217 4392 * * 85 0 * * * * * * 8003 0 0 M 86 5498 * 5970 * 6265 3560 * 5362 4483 906 6370 * * 3663 * 3558 4084 5248 * * 86 29 5653 * 0 * * * 8009 1216 0 A 87 4306 * 3906 3585 * 3867 5292 * 3820 6260 * 4880 3758 2972 4040 2753 2726 5269 * * 87 33 5476 * 0 * * * 8009 1780 0 E 88 3662 * 4420 2038 4402 3992 6524 5821 4086 5883 * 6208 5938 2604 6503 3292 4293 4633 * 5846 88 0 * * * * * * 7844 0 0 P 89 5783 * 4633 4196 * * 5776 * 4093 6052 * 3753 928 4764 * 3985 4352 4431 * * 89 20 6188 * 0 * * * 7576 1000 0 K 90 3759 * 5920 4471 * * * 2272 3519 2221 4005 * * 3903 * 6285 6065 2331 * * 90 53 4783 * 0 * * * 7517 1779 0 T 91 5516 * 4230 3958 * * * 3265 * 4468 * 5854 * 4323 2770 2485 1874 4443 * * 91 0 * * * * * * 7508 0 0 V 92 3655 * * * 3963 * * 3860 2602 4157 * * * 4231 2920 * 3608 1826 * 5838 92 0 * * * * * * 7229 0 0 Y 93 5385 * 4500 3847 * * 3306 * 3094 * 5131 3505 * * 3751 4269 1760 5189 * 3669 93 0 * * * * * * 6999 0 0 W 94 * * * * 3659 * * * * 4581 4210 * * * * * * 4708 642 2775 94 0 * * * * * * 6106 0 0 D 95 * * 1818 1146 * * * * 3862 * * 3070 * * * * 3703 * * * 95 0 * * * * * * 5370 0 0 R 96 * * * * * * * * 2221 * * * * 2955 607 * * * * * 96 0 * * 0 * * * 4374 0 0 //