HHsearch 1.5 NAME c3o6qB_ FAM FILE c3o6qB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3o6qB_.a3m DATE Wed Jan 9 17:23:56 2013 LENG 43 match states, 43 columns in multiple alignment FILT 2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.3 EVD 0.5042 3.7490 SEQ >ss_dssp CCCCCSSCCCCCCCCCSCCCCCCCCCHHHHHHHHHHHHHHTTC >sa_dssp EEEEEEEDEEEEEEEEEEEEEEEEDDEEDDEDEEDDDDDEEEE >ss_pred CCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCC >ss_conf 9874356568875431232123650815899975545664049 >Consensus cepraakpfkxxkxxsxtxiaxyxvspxtxrifxxnerlixey >c3o6qB_ CEPRAAKPFKILKKRSTTSVASYQVSPHTARIFKENERLIDEY >UniRef50_Q65L00(18-52:57) SpoIISB n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65L00_BACLD E=7e-06 s/c=1.47 id=58% cov=84% --------FKMFKRQSKTNIAKYEVSPYTERIFRQNERLIGEY # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * C 1 * 0 * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 E 2 * * * 0 * * * * * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 P 3 * * * * * * * * * * * * 0 * * * * * * * 3 0 * * * * * * 1000 0 0 R 4 * * * * * * * * * * * * * * 0 * * * * * 4 0 * * * * * * 1000 0 0 A 5 0 * * * * * * * * * * * * * * * * * * * 5 0 * * * * * * 1000 0 0 A 6 0 * * * * * * * * * * * * * * * * * * * 6 0 * * * * * * 1000 0 0 K 7 * * * * * * * * 0 * * * * * * * * * * * 7 0 * * * * * * 1000 0 0 P 8 * * * * * * * * * * * * 0 * * * * * * * 8 0 * * * * * * 1000 0 0 F 9 * * * * 0 * * * * * * * * * * * * * * * 9 0 * * * * * * 1320 0 0 K 10 * * * * * * * * 0 * * * * * * * * * * * 10 0 * * * * * * 1320 0 0 I 11 * * * * * * * 1000 * * 1000 * * * * * * * * * 11 0 * * * * * * 1320 0 0 L 12 * * * * 1000 * * * * 1000 * * * * * * * * * * 12 0 * * * * * * 1320 0 0 K 13 * * * * * * * * 0 * * * * * * * * * * * 13 0 * * * * * * 1320 0 0 K 14 * * * * * * * * 1000 * * * * * 1000 * * * * * 14 0 * * * * * * 1320 0 0 R 15 * * * * * * * * * * * * * 1000 1000 * * * * * 15 0 * * * * * * 1320 0 0 S 16 * * * * * * * * * * * * * * * 0 * * * * 16 0 * * * * * * 1320 0 0 T 17 * * * * * * * * 1000 * * * * * * * 1000 * * * 17 0 * * * * * * 1320 0 0 T 18 * * * * * * * * * * * * * * * * 0 * * * 18 0 * * * * * * 1320 0 0 S 19 * * * * * * * * * * * 1000 * * * 1000 * * * * 19 0 * * * * * * 1320 0 0 V 20 * * * * * * * 1000 * * * * * * * * * 1000 * * 20 0 * * * * * * 1320 0 0 A 21 0 * * * * * * * * * * * * * * * * * * * 21 0 * * * * * * 1320 0 0 S 22 * * * * * * * * 1000 * * * * * * 1000 * * * * 22 0 * * * * * * 1320 0 0 Y 23 * * * * * * * * * * * * * * * * * * * 0 23 0 * * * * * * 1320 0 0 Q 24 * * * 1000 * * * * * * * * * 1000 * * * * * * 24 0 * * * * * * 1320 0 0 V 25 * * * * * * * * * * * * * * * * * 0 * * 25 0 * * * * * * 1320 0 0 S 26 * * * * * * * * * * * * * * * 0 * * * * 26 0 * * * * * * 1320 0 0 P 27 * * * * * * * * * * * * 0 * * * * * * * 27 0 * * * * * * 1320 0 0 H 28 * * * * * * 1000 * * * * * * * * * * * * 1000 28 0 * * * * * * 1320 0 0 T 29 * * * * * * * * * * * * * * * * 0 * * * 29 0 * * * * * * 1320 0 0 A 30 1000 * * 1000 * * * * * * * * * * * * * * * * 30 0 * * * * * * 1320 0 0 R 31 * * * * * * * * * * * * * * 0 * * * * * 31 0 * * * * * * 1320 0 0 I 32 * * * * * * * 0 * * * * * * * * * * * * 32 0 * * * * * * 1320 0 0 F 33 * * * * 0 * * * * * * * * * * * * * * * 33 0 * * * * * * 1320 0 0 K 34 * * * * * * * * 1000 * * * * * 1000 * * * * * 34 0 * * * * * * 1320 0 0 E 35 * * * 1000 * * * * * * * * * 1000 * * * * * * 35 0 * * * * * * 1320 0 0 N 36 * * * * * * * * * * * 0 * * * * * * * * 36 0 * * * * * * 1320 0 0 E 37 * * * 0 * * * * * * * * * * * * * * * * 37 0 * * * * * * 1320 0 0 R 38 * * * * * * * * * * * * * * 0 * * * * * 38 0 * * * * * * 1320 0 0 L 39 * * * * * * * * * 0 * * * * * * * * * * 39 0 * * * * * * 1320 0 0 I 40 * * * * * * * 0 * * * * * * * * * * * * 40 0 * * * * * * 1320 0 0 D 41 * * 1000 * * 1000 * * * * * * * * * * * * * * 41 0 * * * * * * 1320 0 0 E 42 * * * 0 * * * * * * * * * * * * * * * * 42 0 * * * * * * 1320 0 0 Y 43 * * * * * * * * * * * * * * * * * * * 0 43 0 * * 0 * * * 1320 0 0 //