HHsearch 1.5 NAME c3o5aB_ FAM FILE c3o5aB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3o5aB_.a3m DATE Sat Apr 9 08:47:12 2011 LENG 108 match states, 108 columns in multiple alignment FILT 49 out of 53 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.2 EVD 0.4701 2.0875 SEQ >ss_dssp CCCCTTTCSSCTTSCCCCCCCCCBCCCCCCCCBCSCCTTCCEETTEEHHHHHHSCCCCCCCGGGGBCTTCCBCSSCCGGGSCGGGTCCBCBSSCCSSCCC CCCGGGTC >sa_dssp EEEEDEDCECEEEEEDEEEEEDEDDEDEEDEDBDCCCEEDDCDEEDBDCCEECCDEEEDCDDDCBCCEEEEDDEEBAEDDCDCDEECDCDDEDEEEEEEE EECEEEEE >ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEHHHHCCCCCCCHHHEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC CCCHHHCC >ss_conf 9510025887544467764210001135878886233682711688731014414784156445132778630103723311000125646888842354 11037409 >Consensus gxvxslRgxxxxxxxxxxxxxxxrxyxxqPPxIPHxiegyxIxxxxNxClxCHxxgAxxisxtHfxdrxgxxlxxvsxrRYfCtqCHvpQxdaxPLvxNx Fxxxxxlx >c3o5aB_ GLVDAMRGPTAIANEPRAPLLYPTENKMQPPTIPHKIDGYQLDKDFNRCMFCHARTAIPVSITHYMDRDNNVLADVSPRRYFCTQCHVPQADTKPLIGNN FVDVDTIL >UniRef50_Q1ZGB9(33-154:155) Cluster: Cytochrome c-type protein NapB; n=6; Gammaproteobacteria|Rep: Cytochrome c-type protein NapB - Psychromonas sp. CNPT3 E=9e-38 s/c=1.29 id=44% cov=100% GGVKSLRGQVEISAinksemlkrVPRDQPLIDRNYVQQPPMIPHTTRGYHVNLNVNKCLSCHSfknageMGATKVSVTHFQARDGMTLSDVSPRRYFCLQ CHVTQVAAKPLVENSFQPVKSL- >UniRef50_A4WXI9(33-145:148) Cluster: Periplasmic nitrate reductase subunit NapB; n=2; Rhodobacteraceae|Rep: Periplasmic nitrate reductase subunit NapB - Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) E=5e-33 s/c=1.25 id=42% cov=94% --VESLRGADPDVDVTTAPVFHQnkqrfvRNYRLQPPLVPHSIDKYQIDMKANECLACHEWrksgerGAPTLSMTHYQDRDGLQTDTVASRRWFCSQCHV PQADAPALVENLFQS----- >UniRef50_A7BUA2(44-139:141) Cluster: Periplasmic nitrate reductase small subunit; n=1; Beggiatoa sp. PS|Rep: Periplasmic nitrate reductase small subunit - Beggiatoa sp. PS E=2e-31 s/c=1.41 id=41% cov=89% --------AVPWNKFPVEPESFPLNYEEQAALIPHLIEGQRIDLESNQCMdSCHTILKKP-SASHYEDRDGNILDEIDSRRYICTSCHLPQTDAQPLREN LFESV---- >UniRef50_A0RQ33(56-155:177) Cluster: PeriplasmiC nitrate reductase, diheme cytochrome c subunit; n=1; Campylobacter fetus subsp. fetus 82-40|Rep: PeriplasmiC nitrate reductase, diheme cytochrome c subunit - Campylobacter fetus subsp. fetus (strain 82-40) E=4e-24 s/c=1.11 id=40% cov=84% -----------LGDAPGTNKTFDRSFENAPPLISHSLDGLvPITIESNSCLSCHvpevakDAGTIPVPKSHLVVlRTGKDLNgQVSDERFNCTQCHVPQA DVKPLKKNNF------- >UniRef50_A1RG48(30-142:143) Cluster: Periplasmic nitrate reductase subunit NapB precursor; n=19; Shewanella|Rep: Periplasmic nitrate reductase subunit NapB precursor - Shewanella sp. (strain W3-18-1) E=1e-23 s/c=0.97 id=41% cov=88% --INSLAGTSAITDIRPADAMPvfptrgaalERSFSDQPPLIPHK-DDYKITLDKNGCLSCHSWekaermKATPVAKSHVIDDKGN----LNGQNYFCTQ CHVAQAENKaPLVENKF------- >UniRef50_A7TBY3(108-185:258) Cluster: Predicted protein; n=2; cellular organisms|Rep: Predicted protein - Nematostella vectensis (Starlet sea anemone) E=0.0009 s/c=0.57 id=28% cov=50% -----------------------------PPSIPHPVKAER-SMGGKTCLQCHENGG-------FTEKFKAYAPVTpHPEMVNCKQCHVQQ--------- --------- >UniRef50_A6Q601(39-171:193) Cluster: Periplasmic nitrate reductase, small subunit; n=1; Nitratiruptor sp. SB155-2|Rep: Periplasmic nitrate reductase, small subunit - Nitratiruptor sp. (strain SB155-2) E=7e-26 s/c=0.88 id=38% cov=91% ------KGVPPKVEYSKAAPgtsqRFQRSYENAPPMIPHSIDGLvPITLNNNACLGCHmpnvakSMGATPLPPTHFKDfffKTKEKLikqklyedvkayk qrlslmakkADIAPQRYNCVQCHAPQANAKPLVANTFKP----- >UniRef50_A9FEA0(167-235:257) Cluster: Diheme cytochrome C; n=1; Sorangium cellulosum 'So ce 56'|Rep: Diheme cytochrome C - Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strainSo ce56)) E=1e-09 s/c=0.92 id=35% cov=61% --------PPPDNTFAgmPSPRRGARAYEGAPPTIPHP------TLMRSECASCHGVhGALGIRSTH-------------PYRQSCTQCHAPSAE----- ----------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 2202 0 0 L 2 * * * * * 775 * * 2741 2865 * * * * * * 2956 * * * 2 0 * * * * * * 2330 0 0 V 3 * * * * * * * 3083 * 2769 * * * * 4065 * * 566 * * 3 0 * * * * * * 2819 0 0 D 4 1869 * 2515 2501 * * * * 2259 * * 3812 * 3404 * * * * * * 4 0 * * * * * * 2839 0 0 A 5 4586 * 4121 4334 * 4491 * * * * * 4394 * * * 771 2529 * * * 5 0 * * * * * * 2839 0 0 M 6 4675 * * * * * * 3545 * 499 3625 * * * * 4623 * 4441 * * 6 0 * * * * * * 2826 0 0 R 7 4574 * * * * * * * 3845 * * * * * 237 * 4637 * * * 7 163 * 3228 * * * * 2900 0 0 G 8 * * 4754 * * 320 * * 3767 * * * 3501 * * * * * * * 8 0 * * * * 518 1728 2915 0 1499 P 9 1854 * 4591 * * 3745 4764 * * 4369 * * 1652 3709 * * 5001 3378 * * 9 41 5161 * 0 * 0 * 3229 1000 1000 T 10 4368 * 3086 4413 * * 3795 * 5066 * * * 1999 * * 5036 2159 2470 * * 10 0 * * * * * * 3240 0 0 A 11 2130 * * 3778 * 4996 * * 4660 * * * 1048 * * 3915 4228 5351 * * 11 103 4619 5136 2585 263 * * 3240 1000 0 I 12 4114 * 3623 * 4219 4914 * 1514 5215 1763 4312 * * * * * * * 4259 * 12 33 * 5464 * * 0 * 3367 0 1000 A 13 2884 * 4236 3190 * 3787 4987 5262 3713 * 5479 2252 4402 * * 4467 3209 3997 * * 13 0 * * * * 0 * 3372 0 1000 N 14 3564 * 2119 2497 * 4872 * * 3404 * * 3408 * 4489 5331 5144 2837 4388 * * 14 68 4436 * 2602 260 * * 3374 1527 0 E 15 3275 * 3704 1792 3016 * * 4338 * * * 4002 3887 * * 5773 3856 3684 4788 5229 15 37 5319 * 0 * * * 3374 1000 0 P 16 3427 * * 5721 * 5393 * 3967 4832 5610 * 4041 1380 5500 2846 3584 4177 * * * 16 66 4480 * 1000 1000 * * 3320 1000 0 R 17 5483 * 3686 * * 3454 * * 2529 * * 5721 2296 5610 3024 4302 2587 4256 * * 17 0 * * * * * * 3320 0 0 A 18 1652 * 3350 3051 * * * * 5764 * * * 2929 5204 5231 3222 4434 3234 * * 18 0 * * * * * * 3338 0 0 P 19 4346 * 2654 4585 * 2613 * * * * * 4434 1002 4594 * * * * * * 19 82 4170 * 2571 266 * * 3338 1541 0 L 20 2836 * 4388 3293 * 5563 5599 * 3502 4073 4256 4611 1988 * 3590 4847 * 4117 * * 20 173 3147 * 2864 213 * * 3338 2119 0 L 21 4430 * 4901 * 3501 * * 4565 2472 2500 3555 5652 * * 2580 3792 3858 * * 5711 21 91 4030 * 2211 351 * * 3367 1644 0 Y 22 4785 * * * 2025 4576 3646 4735 3999 3335 5490 * 4433 4650 2831 * * 4808 * 3152 22 77 4268 * 3085 181 * * 3317 1414 0 P 23 2878 * 3191 2363 * 5931 * * 3715 * 5693 6009 1759 3115 5523 * * * * * 23 187 3043 * 3041 187 * * 3267 1956 0 T 24 * * * 4127 * * * * * 3474 * * * * 479 * 3802 5659 4513 * 24 106 4258 5730 2505 279 * * 3267 1415 0 E 25 2067 * 3007 3734 * * * * * * * 1662 * 5435 * 2335 5356 * * * 25 0 * * * * * 0 3262 0 1000 N 26 * * * * 1833 * * * * * * 3684 5493 4743 * * * * * 781 26 0 * * * * * 0 3262 0 1000 K 27 4260 * 5556 1463 * * * * 4174 5529 * * 2465 5111 3379 4522 * 2869 * * 27 119 3658 * 3170 170 * 0 3186 1820 1000 M 28 * * 3722 2892 5330 4536 * * 5111 3956 3216 1688 * 2250 * * * * * * 28 52 4831 * 2701 241 0 * 3186 1279 1000 Q 29 1694 * * * * * * * * * * * * 533 * * * * * * 29 0 * * * * * * 3187 0 0 P 30 3919 * * * * * * * * * * * 99 * * * * * * * 30 0 * * * * * * 3319 0 0 P 31 4555 * * * * * * * * * * * 63 * * * * * * * 31 0 * * * * * * 3319 0 0 T 32 * * * * 5159 * * 5964 * 1342 2126 * 5128 4405 * 4656 3021 3418 * * 32 0 * * * * * * 3319 0 0 I 33 * * * * * * * 202 * * * * * * * * * 2935 * * 33 0 * * * * * * 3319 0 0 P 34 * * * * * * * * * * * * 76 * * 4290 * * * * 34 0 * * * * * * 3319 0 0 H 35 * * * * * * 0 * * * * * * * * * * * * * 35 0 * * * * * * 3319 0 0 K 36 4228 * 3247 * 5407 * * * 2878 4555 * 4805 3778 * 4751 1420 3064 * * * 36 107 * 3813 * * * * 3319 0 0 I 37 * * * * * * * 1084 * 4294 * * * * * 5283 2333 1982 * * 37 0 * * * * 599 1558 3242 0 1514 D 38 4892 * 1990 1229 * * * * 3550 * * * * * 3394 5331 5078 4240 * * 38 64 * 4527 * * * 0 3277 0 1000 G 39 4397 * 4143 * * 462 * * 3783 * * 4061 * 5655 * 5825 * * * * 39 99 3908 * 0 * * 0 3215 1505 1327 Y 40 * * * 4397 * * * * * 2594 2585 * * 4488 * * * * * 797 40 403 2035 * 0 * * 0 3215 2321 1327 Q 41 5903 * 5166 3488 * * 5082 * 3929 * * 5107 1697 1761 2849 * * * * * 41 70 * 4397 * * * 0 3215 0 1327 L 42 * * * * * * * 627 * 3052 5147 * * * * * * 2295 * * 42 0 * * * * 0 * 3143 0 1511 D 43 * * 1896 5334 * * * * 4135 * * 3691 * 4751 * 3203 1230 * * * 43 0 * * * * * * 3319 0 0 K 44 * * * * * * * 3713 2001 1301 3921 * 5036 5173 4145 5241 5957 4480 * * 44 0 * * * * * * 3319 0 0 D 45 * * 2746 2449 * 3220 * * 2752 * 4911 1473 * * 5754 * * * * * 45 0 * * * * * * 3319 0 0 F 46 2499 * 4277 * 3436 3607 * 4623 4721 5159 * 3027 * 4351 4911 3119 4262 3270 * 6089 46 0 * * * * * * 3319 0 0 N 47 * * * * * * * * 4656 * * 168 4751 * * 4911 * * * * 47 0 * * * * * * 3319 0 0 R 48 4019 * 4751 4069 * 4721 * * 1786 * 3565 * * 2382 2738 4389 4656 * * * 48 0 * * * * * * 3319 0 0 C 49 * 0 * * * * * * * * * * * * * * * * * * 49 0 * * * * * * 3319 0 0 M 50 4911 * * * * * * * * 631 2212 * * * * * 4296 4200 * * 50 63 4555 * 0 * * * 3319 1000 0 F 51 3223 * 3393 5117 6202 3304 * * * * 5964 4359 * 4164 4590 1564 2702 * * * 51 0 * * * * * * 3319 0 0 C 52 * 0 * * * * * * * * * * * * * * * * * * 52 0 * * * * * * 3319 0 0 H 53 * * * * * * 0 * * * * * * * * * * * * * 53 450 1899 * 2585 263 * * 3319 2343 0 A 54 1888 * 3116 2789 * 3860 * * 4660 * * * * * 5117 1786 4555 * * * 54 158 3272 * 2585 263 * * 3319 1902 0 R 55 4263 * * 5549 * * * 4555 3775 5039 3419 4656 * * 2053 4005 5640 2824 2452 * 55 491 1794 * 2409 301 * * 3319 2748 0 T 56 3038 * * * * 814 * * 3000 4555 * * * 5900 * 5179 3612 5994 * * 56 306 2578 5407 2585 263 * * 3319 2262 0 A 57 365 * * * * 4606 * * 4431 4740 * * * * 5928 5339 5232 5013 * * 57 61 * 4606 * * * 0 3315 0 1000 I 58 5938 * * * * * * 3451 4388 4789 * * 1950 * 4605 * 1151 4106 * * 58 0 * * * * * 0 3224 0 1559 P 59 4333 * * 5877 * 4789 * * 2288 * 2566 * 1343 * 4087 * 5085 4605 * * 59 122 4907 4388 1837 474 883 1128 3224 1404 1559 V 60 3919 * * * * * * 912 * 3723 4027 * * * * * * 1913 * * 60 0 * * * * 841 1179 3183 0 1617 S 61 3589 * * * * * * * * * * 4616 1634 * 4800 949 * * * * 61 0 * * * * * 0 3230 0 1000 I 62 3040 * 3961 * * * * 3137 2472 3513 5145 * 3129 * 5000 4800 * 2164 * * 62 0 * * * * * 0 3230 0 1000 T 63 * * 5000 * * * * * * 4528 * * * * * 1434 849 * * * 63 60 * 4616 * * * 0 3230 0 1000 H 64 * * * * * * 0 * * * * * * * * * * * * * 64 111 4943 4582 2322 322 883 1128 3201 1000 1308 Y 65 * * * * 803 * * * * 3607 * * * * * * 5195 4610 * 1854 65 0 * * * * * 0 3215 0 1327 M 66 * * * 3916 5166 * * 3290 3863 5107 2635 * * 2848 4017 * 2409 3747 * 3615 66 39 5215 * 3807 107 * 0 3215 1000 1327 D 67 5082 * 438 3749 * * * * 4954 * * 3617 * * * * 5941 5172 * * 67 418 1992 * 917 1088 * 0 3215 2284 1327 R 68 5284 * 4610 4973 * 4954 * * 3203 * * * * * 428 5852 * * * * 68 33 * 5487 * * * 0 3215 0 1327 D 69 * * 1427 2873 4369 4932 * * 4576 * * 2640 5147 5258 * * 2903 * * 5640 69 0 * * * * 1039 962 3204 0 1595 N 70 * * 4510 * * 514 * * 2741 * * 3675 * * 5156 * * * * * 70 31 5576 * 4755 54 * 0 3215 1000 1327 N 71 3468 * * 4079 * 4816 * * 1696 5096 5082 2238 5339 2795 5284 5655 * 5564 * * 71 60 * 4610 * * * 0 3215 0 1327 V 72 * * 3535 3409 3257 * * 3697 2745 * 4978 5126 5069 5075 4387 * 3198 2605 * 4384 72 41 5169 * 3700 115 1784 495 3220 1000 1495 L 73 3507 * * 4939 * 4056 * * * 530 * * * 5508 5436 * 4323 4966 * * 73 108 3795 * 3841 104 * 0 3242 1642 1514 A 74 1857 * 2423 5942 * 3516 4966 * * 4939 * 3910 3507 5436 * 2785 4425 * * * 74 85 4127 * 0 * * 0 3242 1354 1514 D 75 3813 * 2154 2873 * 4755 3613 * 3953 * * 3759 * 4127 4509 3958 4174 3480 * * 75 34 5436 * 0 * 599 1558 3242 1000 1514 V 76 * * * * * * * 2310 * 2408 3461 * * * * 5746 4560 1127 * * 76 62 4560 * 0 * * 0 3277 1000 1000 S 77 3165 * 2702 * * * 4560 * * * * 3618 * 5197 * 917 5939 * * 4728 77 0 * * * * 0 * 3277 0 1000 P 78 4542 * 4212 4385 * 3186 4005 * * * * 3741 991 4786 * 3860 * * * * 78 0 * * * * * * 3319 0 0 R 79 2911 * * 3417 * 4190 * 5522 * * * 4590 * 4254 999 3852 * * * 4911 79 0 * * * * * * 3319 0 0 R 80 * * * * * * * * * 5407 4656 4721 * * 154 * * * * * 80 0 * * * * * * 3319 0 0 Y 81 * * * * 2829 * * * * * * * * 4911 * * * 4656 5246 396 81 55 4751 * 0 * * * 3319 1000 0 F 82 * * * * 802 * * 4555 * * * 2055 * 5036 * 3560 * 5159 * * 82 0 * * * * * * 3319 0 0 C 83 * 0 * * * * * * * * * * * * * * * * * * 83 0 * * * * * * 3319 0 0 T 84 * * * * * * * * 3622 2981 4643 4533 * 5352 * 3369 1021 3396 * * 84 0 * * * * * * 3319 0 0 Q 85 3574 * * 5731 * * * * * 3659 5036 * * 480 * 4555 5159 * * * 85 0 * * * * * * 3319 0 0 C 86 * 0 * * * * * * * * * * * * * * * * * * 86 0 * * * * * * 3319 0 0 H 87 * * * * * * 0 * * * * * * * * * * * * * 87 0 * * * * * * 3319 0 0 V 88 2594 * * * * * * * * 4555 * * * * * * 3614 494 * * 88 41 5159 * 0 * * * 3319 1000 0 P 89 3471 * * * * * * * * * * * 636 3270 * 4577 3583 4751 * * 89 0 * * * * * * 3319 0 0 Q 90 * * * * * * * * * * * * * 105 * 3829 * * * * 90 0 * * * * * * 3319 0 0 A 91 1240 * * * 5143 * * * * 4376 * 3995 * 5288 4870 2932 2764 3330 * * 91 0 * * * * * * 3230 0 0 D 92 5141 * 809 3246 * 4512 * * 5000 * * 2672 5921 5183 * * 5690 * * * 92 0 * * * * * * 3230 0 0 T 93 1023 * * * * 5133 * 5053 * 4978 * 4594 4371 * 5031 5194 4401 2167 * * 93 0 * * * * * * 3184 0 0 K 94 3525 * 3611 5823 * * * * 1430 * * 3904 3986 2547 3972 * 3685 * * * 94 61 4594 * 0 * * * 3184 1121 0 P 95 5023 * * * * * * * * 4561 * 5194 238 5053 * * 5546 * * * 95 0 * * * * * * 3184 0 0 L 96 4383 * * * * * * 3461 * 388 * * 5651 * * * * 3699 * * 96 0 * * * * * * 3184 0 0 I 97 4371 * * * * * * 2594 5172 * * * 5194 * 4484 * 6035 576 * * 97 0 * * * * * * 3184 0 0 G 98 3662 * 3393 1190 * 3133 * * 3246 * * * 4267 5543 * 5651 3742 * * * 98 71 4371 * 2585 263 * * 3184 1000 0 N 99 * * * * * * * * * * * 0 * * * * * * * * 99 0 * * * * * * 3184 0 0 N 100 * * 3871 4451 * * * * 2458 3729 * 3849 * 5874 3534 5107 1342 4949 * * 100 0 * * * * * * 3184 0 0 F 101 * * * * 42 * * * * * * * * * * * * * * 5110 101 0 * * * * * * 3184 0 0 V 102 * * 5161 2193 * * * 5670 1958 * * * * 2584 3223 3933 3965 3775 * * 102 0 * * * * * * 3109 0 0 D 103 4869 * 2000 * * * * * * * * 4891 1330 * 3575 2320 * * * * 103 0 * * * * * * 3109 0 0 V 104 3258 * * * * * * 3128 * 3328 2560 * * * * 4797 * 1071 * * 104 0 * * * * * * 2760 0 0 D 105 * * 1860 3357 * * 3367 * 1741 3992 * * * * 4750 * 4082 * * 3801 105 0 * * * * * * 2787 0 0 T 106 3478 * * * * 2896 3186 * * * * * * 3760 * 2665 1353 4539 * * 106 0 * * * * * * 2745 0 0 I 107 * * * * * * * 2475 * 385 4197 * * * * * * * * * 107 0 * * * * * * 2586 0 0 L 108 * * * * * * * 2194 * 1108 2081 * * * * * * 3625 * * 108 0 * * 0 * * * 2159 0 0 //