HHsearch 1.5 NAME c3ns5B_ FAM FILE c3ns5B_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3ns5B_.a3m DATE Thu Oct 21 16:20:48 2010 LENG 90 match states, 90 columns in multiple alignment FILT 127 out of 5403 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.5 EVD 0.4336 0.8676 SEQ >ss_dssp CCCSSCEEEEESCCCCBGGGHHHHHHHHHHHHTTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECC >sa_dssp EEEEDBDACACDBBECCDEEBEEBDEDACDDADECBECEEBEBCCDEEECDBECCADACADDDECAEDACEDBDCEECDEECDADAEDDE >ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHCCCEECCCEEEEEEEEC >ss_conf 987567899878278762015531999999996339935887864078888103799998898999999998389572584089999849 >Consensus pxgxxxxixvxnlPxvxxxxxxxxxxxLxxxFxxxGxixxvxixxdxxxxxxxGxafVxfxxxxxAxxAixxlngxxldxxhxlxvxxxk >c3ns5B_ PLGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMK >UniRef50_C5KTC0(488-552:729) Nucleolysin TIA-1, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5KTC0_9ALVE E=0.0002 s/c=0.72 id=13% cov=59% ------------------------ENAIRDALQQaFGTVVAIKLHRDR--NGALAYGYITFEDNQTAERAVEEISNIRI------------ >UniRef50_A7TDW6(102-168:634) Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TDW6_VANPO E=1e-05 s/c=0.75 id=13% cov=58% ---------------------------LKNFFAMYKSLLSVKICVDSHSGESLGYGYLNLTTKEEADDLMERFNYTPI------------ >UniRef50_C4Q4B5(665-730:798) Cytoplasmic polyadenylation element binding protein (Cpeb), putative n=1 Tax=Schistosoma mansoni RepID=C4Q4B5_SCHMA E=0.0002 s/c=0.70 id=19% cov=69% --GFSRKVFVGGLPP------DIDEEEITTAFRRFGPLI-VDWPHKTESKAyfpPKGYCFLLFQDERSVQSLI-------------------- >UniRef50_C7Z0Z0(63-177:292) Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7Z0Z0_NECH7 E=0.0005 s/c=0.39 id=20% cov=90% PTNSDSKIIVSNLPKDVSEqqikrrlqRMEACRNDMRippatasdflrmkpslksradfseqaEYFVQsVGPIKRVEISYGPNS-QSRGIANVTFHKSDG ASKAFQKLNGLLVDNR--------- >UniRef50_B6KKT7(366-443:446) Polypyrimidine track-binding protein, putative n=3 Tax=Toxoplasma gondii RepID=B6KKT7_TOXGO E=3e-05 s/c=0.63 id=19% cov=58% ---------------------------VQKLFKEHGQVSKFTFKAPKNESAKTQMAMMEMGTEAEAVAAVMYLHNHEL------------ >UniRef50_P34217(85-162:668) RNA-binding protein PIN4 n=5 Tax=Saccharomyces cerevisiae RepID=PIN4_YEAST E=0.0001 s/c=0.61 id=20% cov=73% -----NAIVIKNIP------FAIKKEQLLDIIEEMDLPLPYAFNYHFDNGIFRGLAFANFTTPEETTQVITSLNGK-------------- >UniRef50_UPI000057E44B(156-227:286) UPI000057E44B related cluster n=1 Tax=Bos taurus RepID=UPI000057E44B E=0.0003 s/c=0.64 id=18% cov=61% ---------------------------IMKLHSNSGKIMIDMSVERMQPHLSKDNTCMEFENPDEVEKALKHMDGGQIDGQ--------- >UniRef50_A4HPH0(46-119:160) Pre-mRNA branch site protein p14, putative n=1 Tax=Leishmania braziliensis RepID=A4HPH0_LEIBR E=0.0006 s/c=0.61 id=20% cov=83% ----ERILLVTGIP-----SKQCTSEYLYSLFGAYGGIQQIRIGSSFIT---KGCAIVVYEQCEAANNAVGALNEYALSKDRILRV---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 3921 0 0 L 2 2471 * * * * * * 2419 * 2479 * * 2674 * * * 3313 2351 * * 2 0 * * * * * * 4483 0 0 G 3 4309 * * 4630 * 230 * * * * * 4138 * * * * * * * * 3 0 * * * * * * 5434 0 0 S 4 4846 5242 * * 2558 * * 2949 * 2862 * * 4924 4430 * 2381 3941 2923 * 4890 4 91 4037 * 505 1760 * * 6358 1523 0 D 5 4341 * 1767 3125 * 4070 * * * * * 2233 * 5058 4931 2473 * * * 5202 5 46 4981 * 1585 585 * * 6575 1000 0 Q 6 4560 * * * * * * * 3473 * * 1544 * 3248 2891 2387 3805 * * 5514 6 24 5923 * 0 * * * 6822 1000 0 Y 7 3950 4542 * * * * * 3229 3329 3532 5567 * * 5041 * 4471 2242 2077 * 4191 7 0 * * * * * * 6862 0 0 I 8 * 5500 * * * * * 1366 * 2311 * * * * * 5344 * 1459 * * 8 0 * * * * * * 7074 0 0 V 9 * * * * 2082 * * 2836 * 4065 * * * * * * 5394 1701 * 2102 9 0 * * * * * * 7074 0 0 V 10 * 5644 * * * * * 1416 * 3328 * * * 5071 * * * 1071 * * 10 0 * * * * * * 7103 0 0 N 11 4442 * 3254 4614 5923 2207 * 4931 3700 4657 * 3867 * 5802 5115 3328 3125 5884 4689 4618 11 0 * * * * * * 7103 0 0 G 12 * * * 5071 * 1747 5159 * * * * 836 * * 4601 4535 * * * * 12 0 * * * * * * 7103 0 0 A 13 4191 * * * * * * 2057 * 813 5604 * * 5388 * * 5071 4023 * * 13 316 3956 2916 0 * * * 7103 2356 0 P 14 * * * * * * 5248 * * * * * 125 * * * * 4140 * * 14 516 * 1734 * * 2663 248 6938 0 3755 V 15 5228 * 4144 * 3029 * * 4837 2693 * * * 5150 5282 3947 5208 2311 2416 * 3840 15 215 4827 3279 2000 415 3072 183 6486 1000 5323 I 16 5273 * 3567 * 5264 * 5589 2232 * * * 5108 5060 * * 3207 5209 1476 * 3713 16 38 * 5273 * * 3126 176 6975 0 5431 P 17 5276 5031 2492 3157 * 2977 * 5286 4174 3752 * 5603 2794 * * 5255 3321 5113 5417 5151 17 78 * 4250 * * 3232 162 7039 0 5163 S 18 4202 * 2511 3412 * 5152 5196 * 2679 * 5274 3704 4252 3154 * 2956 4433 * * 5490 18 41 * 5173 * * 3330 151 7054 0 5266 A 19 2265 * 5303 1926 * * 5393 3316 * 2923 5186 5338 * * 5258 3671 * 3891 * 5420 19 144 4247 4567 2656 249 2657 249 7112 1728 5176 K 20 5434 * 4021 3056 * * 3692 * 1608 * 5495 * 4089 * 2477 3579 5510 5408 * * 20 102 * 3879 * * 558 1640 7229 0 5161 V 21 5883 * 4910 4020 1847 5662 3853 * 3527 4396 4790 * 5996 3931 4617 * 5836 3545 5060 3386 21 44 * 5051 * * 2892 209 7538 0 3903 P 22 3893 * 3095 1642 * 3909 5656 * 5117 * 6094 3072 3717 3034 * 6162 5929 * * 5802 22 27 * 5762 * * 3230 163 7491 0 4109 V 23 2903 5810 4321 3293 4928 * * 3242 2822 4934 * 4872 6099 * 5463 * 2398 3028 * * 23 0 * * * * 1255 784 7397 0 4168 L 24 * 5937 5999 6338 4464 6315 * 4364 5108 1385 6273 4996 * 5964 5937 3712 2208 4258 * 5972 24 18 6343 * 3322 152 * 0 7563 1000 3332 K 25 5147 * 4638 1516 5003 * 6694 4138 2032 4191 6282 * 5914 4113 5143 5813 5104 5468 * * 25 0 * * * * 2502 280 7574 0 3332 K 26 5253 * 3817 1596 * 4477 5082 * 2711 6176 5934 3180 5516 4727 4176 4412 4562 * * * 26 0 * * * * 807 1223 7656 0 3068 A 27 3877 * 2607 3597 3845 * 5037 3875 5910 4595 4233 * 5304 3884 * 4150 3175 2928 * 6122 27 13 * 6780 * * 0 * 7803 0 1752 L 28 * * * * 6423 * * 2329 * 743 4285 * * * * * * 2830 * * 28 10 7235 * 0 * 0 * 8123 1000 1000 T 29 5587 * 7150 3707 5328 * 4933 4925 2468 3875 3853 4932 * 4272 2139 4419 4607 5476 5331 4634 29 42 5113 * 3223 163 * * 8127 2317 0 S 30 4103 * 2980 2257 * 4876 6925 * 2310 6672 6616 4806 6227 3462 4867 3057 4393 * * * 30 9 * 7355 * * * * 8127 0 0 L 31 4012 * * 4262 3120 * 4584 2807 3915 1716 4457 * * 6748 * * 5600 3858 * 3811 31 9 * 7357 * * * 0 8134 0 1000 F 32 * 4621 * * 560 * 5676 4476 * 3060 5554 * 6798 * * * * 4292 * 6043 32 0 * * * * * 0 8136 0 1471 S 33 4529 5200 5453 3157 6476 3397 * 5940 3291 6812 7305 4301 6110 3215 5777 1602 6562 5909 * 7179 33 9 7364 * 0 * 1000 1000 8139 1000 1471 K 34 3687 * 4063 3455 5758 5584 6736 * 2094 5850 6924 4917 4833 2982 3575 3478 4154 5108 * 6742 34 29 5665 * 0 * 0 * 8137 1948 1000 A 35 4667 4344 5217 * 1953 6321 4560 3475 5737 3994 5054 6707 6532 * * 5707 5832 3043 5965 2512 35 33 * 5462 * * * * 8139 0 0 G 36 3531 * 4759 * * 394 * 6469 5720 6751 * 6694 5963 6628 6929 6141 * 6820 * 6795 36 39 5828 6830 1599 578 0 * 8121 1549 1914 K 37 * * 4520 2490 5741 4344 5540 6367 3083 4860 * 4180 2315 5050 4092 4284 3971 4192 * 6700 37 60 5256 6098 997 1003 * 0 8128 2170 1000 V 38 4999 6570 * 5559 6615 6563 * 1470 * 3443 * * 4499 * * 5333 4726 1488 * * 38 21 * 6141 * * 1443 662 8123 0 2108 V 39 5380 * 4566 3534 * * 5896 3415 2530 3952 5657 7334 5076 4393 3356 4726 3858 2572 * 5428 39 31 6684 6448 3000 193 1090 916 8123 1000 2593 N 40 4578 6888 3482 2793 5010 5304 5030 4417 3152 7329 * 4443 5660 4116 3426 2668 4640 5701 * 5048 40 37 5322 * 774 1268 603 1550 8123 2255 2243 M 41 4143 4418 5688 * 4121 6755 5944 1986 * 4137 5348 7439 * * * 4828 6095 1507 6593 4550 41 44 6520 5706 2585 263 0 * 8121 1000 1000 E 42 4984 * 4261 3856 4038 * 4431 5204 2879 4720 5232 4700 6478 4539 2533 5218 4406 3451 6993 3766 42 14 6735 * 3000 193 1569 593 8136 1000 2005 F 43 6991 * 6480 * 3062 * 5106 2097 5357 2086 3225 * * 5749 6613 5704 * 2571 * 6039 43 31 6000 7437 3057 185 * 0 8144 1601 1576 P 44 5076 4486 6756 6664 5554 5689 4391 2997 5808 3293 4287 4622 1970 7353 5568 4800 * 2952 * 4889 44 62 7728 4748 0 * 0 * 8148 1000 2102 I 45 5176 * * 3868 4292 * 6056 3758 3166 3356 4226 5880 4970 6601 2710 4452 4049 3449 6776 3599 45 35 5918 7034 2769 229 1228 803 8128 1593 3012 D 46 3859 * 1353 4564 5413 6851 4610 * 5165 * 6352 2438 4525 6657 3994 5120 5296 * * 5090 46 112 5563 4231 2114 379 372 2138 8134 2193 2623 E 47 5314 * 4109 4202 5621 5049 5010 6101 2555 5279 4983 4423 2365 4699 2815 3813 5154 * 6952 6598 47 60 6689 5010 1585 585 1073 931 8076 1000 3738 A 48 4356 6458 3474 3112 5986 4070 5252 5859 3123 5997 5770 3665 5303 3218 3857 3410 5580 4078 * 6405 48 111 7140 3897 1585 585 2723 237 8077 1000 3844 T 49 4653 6976 4614 3209 6807 3640 * * 4960 6725 * 2813 5030 6883 5900 2497 1855 5585 * * 49 69 4746 6750 3121 176 1031 970 8013 2959 5343 G 50 4078 * 4401 5733 4925 1410 4652 * 3263 7381 * 3173 4386 4553 4431 5399 * 6774 * 4835 50 27 6672 6793 1585 585 1500 629 8051 1000 4093 K 51 4518 6445 5580 3867 5260 4610 4232 4566 2074 3839 5891 4549 5489 4391 2879 4961 4381 5339 * 6017 51 56 4954 7454 744 1312 2596 261 8045 2449 3497 T 52 4796 7033 * 6550 4775 3868 4395 7048 4854 5319 6049 3365 2869 4782 4572 1859 3485 5329 * 6840 52 54 6225 5407 3443 139 544 1671 8070 1591 3478 K 53 4861 4769 6636 7079 7006 6740 * 5316 1781 3665 6448 4623 4939 7171 1747 7073 3663 6478 * 6359 53 48 6355 5604 1585 585 2143 370 8121 1757 2923 G 54 5187 4738 4578 * 6814 636 6047 * 4402 6900 * 4619 5042 5199 4594 * 7124 6557 * 6312 54 36 * 5348 * * 497 1779 8181 0 3795 F 55 5751 3521 6648 6667 1933 * 6952 3541 5004 5002 4457 5679 * 5348 5702 5114 4349 4407 * 2168 55 10 7137 * 1000 1000 287 2471 8183 1000 3131 L 56 1194 2860 * * 5516 1881 * 5213 * 6853 6853 * * * * 4872 5702 4870 * * 56 41 5166 * 809 1220 * 0 8133 2513 1000 F 57 6095 5702 * * 776 * 5369 4501 * 3786 5499 6871 * * 7169 5863 6686 4504 * 2911 57 0 * * * * * 0 8133 0 1000 V 58 4594 5076 * 6320 5924 * * 2112 * 2710 4412 * * * * * * 1092 * * 58 0 * * * * 0 * 8133 0 1000 E 59 5314 5472 5145 1897 * 6822 5943 5598 3601 5319 * 4919 * 3530 4291 3723 2899 3651 6612 4964 59 0 * * * * * * 8139 0 0 C 60 * 4540 * * 857 * * * * 4598 4206 * * * * * * * * 1693 60 15 6590 * 1585 585 * * 8139 1000 0 G 61 2706 * 3534 2761 5496 4886 5438 5708 3273 5323 * 4566 4502 4525 4532 4169 3619 4710 * 4713 61 8 * 7490 * * * * 8139 0 0 S 62 5742 7392 2311 3472 5938 * 5294 6421 4048 5874 * 2582 * * 4938 2363 2743 * * 6753 62 0 * * * * 0 * 8146 0 1000 M 63 3043 * 5314 3198 6017 6995 4275 4483 3479 5082 6858 4646 2766 6052 3313 3685 4673 3972 * 6187 63 18 * 6321 * * * * 8139 0 0 N 64 3377 6815 2922 1613 5390 6923 7225 5698 6432 5111 5509 5168 5114 3769 5210 3092 6295 6811 6856 6522 64 0 * * * * 0 * 8110 0 1000 D 65 3895 5741 1963 2909 5946 4518 4800 5374 7045 * 5999 4877 5759 3212 5742 2863 5295 4663 * * 65 0 * * * * * * 8139 0 0 A 66 558 4848 * 6528 * * * 5838 * 5465 5715 6804 6811 * * 4227 4128 3513 * * 66 0 * * * * * * 8139 0 0 K 67 3838 * 2950 2339 6756 * 6961 4998 3433 4045 6861 4185 6574 2862 4558 3782 5237 4823 6304 * 67 0 * * * * * * 8134 0 0 K 68 2853 * 4167 3412 6797 * 6738 4328 2104 5368 * 4209 * 3626 3095 5543 3788 5029 * 6573 68 0 * * * * * * 8134 0 0 I 69 540 3321 * * 6167 * * 4232 * 6091 * * * * * 5752 6518 3311 * * 69 0 * * * * * * 8134 0 0 I 70 4250 4828 * * 5041 * * 1807 5374 1949 4077 * * 4954 4543 * 7045 2622 6871 * 70 18 * 6327 * * * * 8134 0 0 K 71 4388 * 4363 2464 6465 * 4830 5329 2181 * 6376 4255 * 3167 3009 3934 4628 5353 * * 71 20 7364 7086 0 * 0 * 8201 1000 1702 S 72 2669 5878 6007 3569 5599 4095 3984 5264 3193 4442 6910 4633 * 3145 4899 3654 3599 6661 * 4832 72 9 7384 * 2000 415 * 0 8170 1000 1000 F 73 5308 4583 * 6674 3300 * * 4099 5234 1167 2749 * * * 5948 5092 5932 4820 * 4459 73 26 5821 * 1329 732 0 * 8170 1754 1000 H 74 4770 * 2495 5726 6714 7080 2440 * 5797 * 6779 1434 * 3924 5261 4324 5218 * * * 74 0 * * * * * * 8168 0 0 G 75 5455 * 4536 6235 6487 997 5357 * 3857 5841 * 2306 * * 4046 5389 6498 * * * 75 10 * 7203 * * * * 8157 0 0 K 76 4527 * * 5498 3258 4483 4251 4696 2383 4520 4942 5766 6992 3688 4916 5189 3109 5240 * 3064 76 12 6893 * 1585 585 * 0 8208 1000 1000 R 77 5631 * 6989 3584 4525 * 4179 4409 2121 4528 4540 4685 3649 3116 3705 4343 6896 4628 6664 6973 77 43 5857 6395 0 * * 0 8009 1527 1000 L 78 * * * * 2373 * * 1924 * 1369 4631 6763 * * * 6475 * 4253 6131 5121 78 102 5037 4716 0 * * 0 7950 1650 1671 D 79 5529 * 1033 2874 4383 4435 6510 6182 5859 6200 * 3671 6575 5891 6498 4303 * 6455 * 5358 79 23 5959 * 1000 1000 289 2460 7667 1000 3046 L 80 4823 * 4486 3944 * 1753 5477 * 1952 4926 6399 4181 6120 4814 5764 3854 5271 6132 * * 80 46 * 5007 * * 0 * 7577 0 1000 K 81 5912 * 6202 4454 * 4038 * * 2216 * * 2007 5982 2766 2561 4252 6104 * * * 81 119 * 3661 * * 0 * 7572 0 1690 H 82 * * * 4436 * 5648 1079 4514 5643 5538 * 4409 * 3059 4054 5125 4727 4486 * 4760 82 32 5523 * 0 * 0 * 7154 1000 2194 R 83 5750 * * * * * 5063 3791 4499 3642 4357 5330 4373 4334 2039 5392 2129 3513 * * 83 0 * * * * * * 7007 0 0 L 84 * * * * 5278 * * 3031 5269 697 4169 * * * * * * 2703 * * 84 0 * * * * * * 6979 0 0 F 85 5343 * 5084 4180 5209 * * 4090 4857 2649 4884 2902 * * 2537 5301 3278 2809 * * 85 0 * * * * * * 6852 0 0 L 86 3989 * 4177 4646 * * * 4103 * 3040 * * * 5268 5156 * 3838 894 * * 86 0 * * * * * * 6684 0 0 Y 87 * * * * 1795 * 4007 * * * 3812 * * 3826 * * * * 3841 1191 87 0 * * * * * * 5308 0 0 T 88 1924 * * * * * * * 3210 * * * * * 3392 2504 1486 * * * 88 0 * * * * * * 4828 0 0 M 89 3302 * * * * * * 3178 3420 2388 2443 * * 2293 * * * 3110 * * 89 0 * * * * * * 4672 0 0 K 90 * * * * * * * * 0 * * * * * * * * * * * 90 0 * * 0 * * * 3913 0 0 //