HHsearch 1.5 NAME c3mopC_ FAM FILE c3mopC_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3mopC_.a3m DATE Sun Aug 29 03:46:36 2010 LENG 105 match states, 105 columns in multiple alignment FILT 101 out of 279 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.8 EVD 0.4191 -0.2538 SEQ >ss_dssp CCCGGGSCTHHHHHHHHHHTSCCSSSCCHHHHHHHTTCCHHHHHTTSSSSCHHHHHHTTTTSSSSCCSHHHHHHHHHTTCTTHHHHSHHHHHHHTHHHHT TTCCC >sa_dssp EBCADBADEEABECAADCBCEDCEEDBBACCAAECAEBEEEDBDEBDEDEDBAACAADDADECEDCBACCACEBADECEBEDACEEACECBEDBBDEDDE DEEEE >ss_pred CCCHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH HCCCC >ss_conf 9428887889999999970868556583899999839999999983138676999999997278544999999999869199999999998712789984 12689 >Consensus xxpxxxLxxxxrxxLxxxLdxxxxxgxdWrxLAxxLglxxxxIxxixxxxsPtxxlLxxwxxxxxxTvxxLxxxLxxixRxDvvxxlxxxxxxdxxxyxx xxxxx >c3mopC_ MLPLAALNMRVRRRLSLFLNVRTQVAADWTALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRPGASVGRLLELLTKLGRDDVLLELGPSIEEDCQKYIA AALEH >UniRef50_A7RGQ1(151-242:515) Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RGQ1_NEMVE E=7e-12 s/c=0.78 id=23% cov=77% ----RNFSWKFQRQIAELLNPrKEPTGEDWRMVASNLGIKAATIRTLESKENPTMELLNLCH---NTTTVDFFRAIDESGRFDVISDL------------ ------ >UniRef50_UPI0001793898(18-116:358) PREDICTED: similar to myd88, partial n=1 Tax=Acyrthosiphon pisum RepID=UPI0001793898 E=4e-10 s/c=0.66 id=22% cov=82% ------LRLPTRERLSCMLNatkvipSPEKLPRDWRGLCTLLNYTIPSGC---DPTDPIGKIFKFCEAK--TTIAHFTRCLERIDRYDVVEETEELFISD IK--------- >UniRef50_P19838(809-890:968) Nuclear factor NF-kappa-B p50 subunit n=54 Tax=Euteleostomi RepID=NFKB1_HUMAN E=9e-09 s/c=0.75 id=21% cov=73% ----------VKLQLYKLLEIPDPD-KNWATLAQKLGLGILN-NAFRLSPAPSKTLMDNYEV-SGGTVRELVEALRQMGYTEAIEVIQA----------- ----- >UniRef50_UPI000186D569(10-95:599) hypothetical protein Phum_PHUM197620 n=1 Tax=Pediculus humanus corporis RepID=UPI000186D569 E=0.0001 s/c=0.56 id=21% cov=71% ------------KKLILLLNEND----EWRKVAEYFGvFSDNDIQYILKSLEPAEKLIFELGSRL-CTIEIFCTALEKCQLFNILLLFKTYF-------- ------ >UniRef50_C3Y3E3(551-647:731) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Y3E3_BRAFL E=1e-08 s/c=0.63 id=20% cov=85% -----AISQDLQEKLISRLDVKVDTGNDFRSFADELGFDSFQRTLLDqRFDSPTHCLLMYMElraqkmrQSSSEMLQELAQILKKIERSDLATLIETHLQ Q------------ >UniRef50_Q4RS55(722-813:822) Chromosome 13 SCAF15000, whole genome shotgun sequence. (Fragment) n=5 Tax=Vertebrata RepID=Q4RS55_TETNG E=3e-06 s/c=0.58 id=21% cov=72% -----------------------QIGHDWQVIGINLGLSYQELDRIKYKNrdnlgALVLDMLFHWargqRTAGPGAVSRLVTAMMESGRRDLADEIEDTV RIGRRKY------- >UniRef50_UPI0000E4653A(1044-1133:1135) PREDICTED: similar to GA17321-PA n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E4653A E=3e-12 s/c=0.81 id=22% cov=82% --PIKDMDYRCREMLKIMLDPETNTGSDWKVFAYYYKMRFEEVRYVDSLTKSSTLYLFNWlhEKRPELTCGDFKKCAEIHQRLDVVRKM----------- ------- >UniRef50_UPI0000E49531(6-112:1011) PREDICTED: similar to GA19272-PA n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E49531 E=9e-16 s/c=0.79 id=18% cov=98% MMYVRDIPVPARQQLCDLLD-DISGLKNWKHLAGLLGFTNDDIAMFQRCMlrpggSPTDEMLTTW-DYENHTIEELYLKLYEIKHARCMMFLKDFVRPDL H-YLIQKITH # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * 1589 583 * * * * * * * * * 1 0 * * * * * * 2288 0 0 L 2 * * * * * * * 1878 * 1765 1632 * * * * * * 3171 * * 2 0 * * * * * * 5125 0 0 P 3 4691 * * * * * * * 4238 * * * 279 * * * * * * 3575 3 0 * * * * * * 5544 0 0 L 4 3650 * * * 4716 * * 2350 * 1271 * * * 4586 * * * 2637 * 3850 4 0 * * * * * * 5736 0 0 A 5 2804 * * * * * * * 4128 * * * 4794 3900 1600 2209 3071 * * 4992 5 0 * * * * * * 6022 0 0 A 6 2653 * 3041 3587 * * 3092 5079 4014 4095 * 3816 * 3376 4350 * 5307 3474 * 4739 6 0 * * * * * * 6200 0 0 L 7 * * * * 5009 * * 3706 * 364 3114 * * * * * * * * * 7 0 * * * * * * 6473 0 0 N 8 5574 * 3035 5399 5287 3541 * * * * * 2789 1817 3896 3264 3035 * * * * 8 0 * * * * * * 6581 0 0 M 9 5332 * * * 3376 5679 5059 5528 * 2565 4019 5511 4778 3550 * 4007 4325 2780 5357 2727 9 0 * * * * * * 6810 0 0 R 10 3560 * 2614 3313 * 4136 * * 4269 5551 5194 5469 3327 5698 2766 2913 4805 4761 * * 10 0 * * * * * * 6810 0 0 V 11 5664 3703 * * 5459 5502 5797 3121 4206 3362 * * 5575 * * 3774 1924 2206 * * 11 0 * * * * * * 6837 0 0 R 12 5565 * * * 4987 * 5906 5928 3146 2775 5677 * * 4126 1030 * * 4268 * 4767 12 0 * * * * * * 6936 0 0 R 13 5891 6046 3567 2886 * * 4596 5912 2510 4327 * * * 2411 2356 5967 5877 5676 * 5106 13 0 * * * * * * 6975 0 0 R 14 5327 * 4048 2259 * * 5065 5967 2832 4508 4654 5670 * 2902 2225 4745 4998 * * * 14 0 * * * * * * 6975 0 0 L 15 * * * * * * * 2919 * 524 5405 * * * * * * 2751 * * 15 0 * * * * * * 7118 0 0 S 16 1796 2161 * 4168 * 4830 * 4876 5390 * * 5779 * * 5676 2322 * 3876 * 4885 16 0 * * * * * * 7122 0 0 L 17 6128 4433 4564 3787 4678 6255 4346 4229 3982 2099 4336 * * 4504 3503 3899 4225 3814 * * 17 27 * 5773 * * * * 7122 0 0 F 18 6046 * 6444 4108 3728 * 3475 5107 4212 1710 2880 * * 5908 4166 5218 4443 5694 6358 4353 18 0 * * * * * 0 7092 0 1000 L 19 * * 5537 * 3752 * * 4400 * 223 * * * * * * * * * * 19 0 * * * * * 0 7289 0 1000 N 20 * * 853 5025 * * * * * * * 1692 * * * 3238 * * * * 20 131 3968 5441 1897 451 0 * 7215 2409 1000 V 21 5595 5910 * 4863 * 5983 * 3432 4668 4814 5509 * 1651 6208 3782 4584 5247 2072 6328 * 21 77 4687 6244 664 1440 0 * 7162 2222 1686 R 22 3329 * 3669 2722 * * 6314 5604 2675 4820 * 4617 2231 6469 3708 4357 5144 5790 * 6871 22 20 6184 * 2585 263 0 * 7238 1000 1000 T 23 3911 5427 3136 3460 * 5171 4075 4187 3520 5145 5204 3159 * 4066 3228 5266 3314 5950 * * 23 41 6131 6216 1000 1000 * * 7242 1000 0 Q 24 3114 5225 3732 4216 * 5203 * 4311 3747 * 5569 3747 2102 3722 4111 5275 * 3493 * * 24 145 5373 3810 2663 248 * 0 7257 1623 1000 V 25 5016 * 4318 4826 3497 3021 * 3592 6270 2198 5241 6192 5347 6089 * 5394 3025 2920 * * 25 87 6489 4399 0 * 2521 276 7386 1000 3195 A 26 4603 * * * 6283 951 6762 6371 5426 5169 * 5223 4583 * 5540 4003 4400 2838 5905 * 26 120 3927 6142 2012 411 1763 504 7302 3099 3787 A 27 3370 6371 5933 5664 * * 4645 * 1887 * 6409 2411 * 4802 3039 2795 4990 6392 * * 27 34 5419 * 1956 430 1725 520 7287 1750 3428 D 28 6025 * 922 5017 * 3973 6354 * 5942 * * 1692 * 6314 * * 6415 * * * 28 30 5579 * 3465 137 0 * 7331 1658 2986 W 29 * * * * 4497 * * * * * * * * * * * 6073 6191 146 5421 29 0 * * * * * * 7520 0 0 T 30 4717 6444 5216 3598 * * 6867 6357 2221 6261 6893 * 6531 3656 1277 4966 4331 * * * 30 17 6430 * 1585 585 * * 7520 1000 0 A 31 5064 * 3622 3354 * 2558 3310 4663 4720 4855 3816 5294 * 3922 4678 3414 4611 4208 6917 6675 31 0 * * * * * * 7520 0 0 L 32 * 5436 * * 3425 * * 5130 * 508 4282 * * * * * * 3486 * 6444 32 0 * * * * * * 7520 0 0 A 33 388 5263 * * 5579 3136 * * * * * * * * * 5365 * 4297 * * 33 32 6917 6179 0 * * * 7520 1000 0 E 34 4956 6501 3612 2674 6061 3839 6593 5712 3823 4207 * 5593 6345 3529 2986 3083 4307 6001 * 4346 34 28 5683 * 2851 215 0 * 7491 1632 1000 E 35 3875 5162 * 2410 6419 * 3500 5539 2413 3316 * 4275 * 4341 3369 6482 * 5600 6655 3911 35 16 6469 * 1000 1000 * * 7520 1000 0 M 36 5350 4798 * * 3962 * * 3235 6430 776 3635 * * * * * * 5012 5303 4772 36 23 5961 * 2387 306 * * 7520 1586 0 D 37 * * 4276 5205 * 752 4929 * 3696 * * 3403 5579 5641 4936 4806 * * * 6179 37 86 4394 6609 2240 343 * * 7520 3106 0 F 38 * * * * 1803 * 6459 2589 * 1528 4970 * * * * * * 4103 * 3337 38 54 5948 5591 796 1238 0 * 7512 1496 1000 E 39 * 6433 2941 3460 * 4516 6630 * 4860 * 5209 3927 3320 4198 5162 2172 2745 6416 * 5575 39 21 * 6120 * * 0 * 7508 0 1682 Y 40 4197 * 4077 4947 4093 5474 4079 4008 4809 4676 7434 3339 3993 3773 4120 3747 4530 3894 * 3419 40 42 * 5123 * * * 0 7490 0 1000 L 41 3794 5281 3192 2953 5556 * 4424 4597 5334 3739 6989 3687 3644 3287 5969 3229 4208 6633 * * 41 36 6989 5927 0 * 1052 949 7481 1000 2259 E 42 3942 * 2644 2151 4335 6077 5263 5593 5045 4212 6087 5422 * 3106 5320 4395 5674 5295 6053 3888 42 34 * 5422 * * 898 1110 7395 0 2652 I 43 6431 * * * 6482 6046 * 731 * 2603 5236 * * 6185 6158 * 6040 2996 * * 43 45 5331 7387 2371 310 1037 963 7445 1600 2407 R 44 4551 4644 2702 2572 * 4479 6420 * 4499 4226 5050 3891 6592 3365 3010 5688 3906 5256 * * 44 38 * 5250 * * * 0 7479 0 2075 Q 45 3670 * 6858 3521 4937 5402 3761 6045 4713 3336 6627 3464 6141 4162 3908 4674 5132 3645 4870 3011 45 40 5207 * 1022 978 1337 727 7432 1681 2592 L 46 * * 6204 6154 2531 * * 1412 * 2321 3742 * * * 6291 6207 4798 4292 5498 6236 46 86 4109 * 1585 585 1623 566 7491 3329 2112 E 47 3342 * 2924 1990 * 4337 6451 6352 3604 5636 6303 4728 5908 4640 2655 4374 5144 * * * 47 142 3770 5613 1753 508 933 1070 7510 3690 1708 T 48 4405 4980 3151 4053 * 4220 4421 * 5190 4448 5780 3281 6543 3191 3176 3174 3592 7037 * 5545 48 76 4292 * 2240 343 1709 527 7509 2557 1688 Q 49 4275 4277 3202 3883 4882 4083 3840 * 2980 4528 5573 6523 4443 3223 3588 3628 5227 * * 6408 49 148 3537 6428 2634 253 880 1130 7549 3809 1624 A 50 4558 4497 3551 3366 * 4985 6420 * 2549 5688 5730 3785 3403 6802 4159 3312 3039 6200 * 6560 50 173 3333 6180 2065 394 1089 916 7547 3874 1495 D 51 4707 6493 2606 3798 6807 5258 6959 * 5203 * 6774 3431 7215 4145 4099 1330 * 6835 * 6137 51 60 5130 6391 2322 322 * 0 7511 2266 1743 P 52 6454 6590 5831 * * 6265 6439 6396 4019 4829 * * 649 4137 3299 5004 * * * * 52 26 5784 * 2119 378 1476 642 7485 1665 2189 T 53 2387 3535 * * 4905 6446 * 4705 6291 6094 4728 6675 5853 6306 * 3330 1401 4150 * * 53 13 6836 * 2000 415 1023 977 7519 1000 1605 G 54 4275 7136 4055 3120 5808 4801 4835 5502 3818 3325 3168 5061 * 5208 3368 4321 3985 5399 6610 3791 54 0 * * * * * 0 7537 0 1000 R 55 3056 5115 3653 2768 * 6391 4996 5521 2931 3562 4560 6561 6160 3869 3742 3839 5064 5682 * 6116 55 31 5561 * 2177 361 0 * 7537 1666 1000 L 56 6947 * * * 4808 * * 3022 5865 1316 2150 * * * * 6318 6187 2788 * 5802 56 11 7086 * 1000 1000 * * 7556 1000 0 L 57 * * * * 4066 6161 * 3047 * 403 6474 * * * * 6623 6163 6187 * * 57 67 4934 6316 0 * * * 7556 2118 0 D 58 4775 * 2384 2822 3552 5581 5104 4621 4155 3968 6231 4006 * 4764 3664 5196 3678 * 5383 6157 58 55 5408 6157 0 * 0 * 7537 1740 1000 A 59 3714 * 4011 3461 4787 * 4212 3431 4214 2387 4958 4445 * 4884 4063 4270 4981 5561 * 3910 59 26 6641 6940 1585 585 * 0 7519 1000 1000 W 60 6273 5554 * * 4309 * * 4896 * 3531 5641 * * 6169 * 6567 * 4348 910 2560 60 204 3025 6752 1213 814 981 1019 7516 4434 1790 Q 61 3616 * * 1952 * 3011 5460 5512 3945 4169 5583 5381 * 3778 3869 2994 5704 5072 * 6634 61 95 4418 5882 1582 586 0 * 7514 2636 1671 G 62 3595 * 4155 4541 6140 3940 5126 5183 2905 5271 5144 5296 * 3009 4117 3711 2884 4330 * 5256 62 79 5712 4862 1051 951 1000 1000 7552 1692 1654 R 63 6412 4894 * 5453 6432 3642 3901 5485 2740 5063 6577 4295 * 3219 2419 3220 4569 4450 * 5626 63 232 3469 4105 963 1038 502 1767 7500 3839 2467 P 64 5899 * 5296 2554 * 6761 5139 * 2798 4394 * 3653 2219 3606 5761 3470 5230 6517 * 4799 64 174 4263 4024 779 1261 294 2438 7393 2636 3352 G 65 5984 * 3236 3928 4588 2218 4450 * 4697 5381 * 2539 4399 5078 4086 3490 5463 5156 * * 65 55 4751 * 1418 676 509 1749 7436 2282 3406 A 66 1828 3870 5834 4378 4601 3710 4258 5802 6501 4224 5345 5371 4389 6475 6651 4406 3847 4739 6107 4452 66 166 3359 6486 1477 642 * 0 7537 3691 1632 S 67 4064 5724 6263 * * * * * 4357 * 6170 4305 * * * 2331 746 * * * 67 107 3802 * 1523 617 0 * 7442 3241 2211 V 68 6586 5125 * 6710 * 6552 * 2174 * 2054 * * * 5761 6489 6103 4508 1396 * 6607 68 11 7075 * 1000 1000 * * 7447 1000 0 G 69 4318 * 3668 3513 * 2434 5338 * 3247 4278 * 5282 4248 2547 3811 4217 5442 5680 * * 69 0 * * * * * * 7478 0 0 R 70 5143 * 2816 2454 * * 4529 5627 3480 5855 6245 3681 * 4258 3288 3769 3602 3733 * * 70 0 * * * * * * 7478 0 0 L 71 * * * * 3755 * * 3713 * 347 4580 * * * * * * 5544 * * 71 0 * * * * * * 7478 0 0 L 72 3279 4286 * 4403 3772 * 6445 3005 3776 3305 4508 6125 * 5148 3971 6769 3759 2754 * 4901 72 0 * * * * * * 7478 0 0 E 73 4565 * 2434 2523 * 5850 6496 * 3250 5584 6972 3697 * 3021 3977 3973 3681 6165 * 5877 73 0 * * * * * * 7478 0 0 L 74 1476 4279 * 6149 4713 5524 6558 3612 5057 2903 4639 6895 * 6216 * 5532 4162 3632 * 4688 74 14 6680 * 1585 585 * * 7478 1000 0 L 75 5804 6105 * * 4020 * * 4847 * 268 4997 * * * * * * 6762 * * 75 0 * * * * * * 7478 0 0 T 76 4095 6595 4397 2902 6400 5019 4430 * 2543 4227 5338 4714 * 3251 3512 4320 4721 4413 * 4464 76 44 5069 * 1000 1000 * * 7478 1538 0 K 77 4697 * 3663 2207 * 4845 * 4100 2889 4887 * 4142 * 3475 2937 3849 4645 5844 * * 77 0 * * * * * * 7478 0 0 L 78 6096 3499 * * 5876 * 5779 1285 * 2640 2207 * * * * 4697 * 5557 * 6100 78 15 6610 * 1585 585 * * 7478 1000 0 G 79 6206 * 3244 2704 * 1329 5451 * 3130 * * 3649 * 4111 4543 6415 * * * * 79 0 * * * * * * 7476 0 0 R 80 * * * 5097 * * 4316 * 4240 3521 7260 5392 * 5619 478 * * * * 6419 80 0 * * * * * * 7477 0 0 D 81 4959 4882 4196 3451 4001 5760 3977 4806 6744 3432 5658 4254 4204 3530 3223 5355 4384 4797 4566 4831 81 0 * * * * * * 7474 0 0 D 82 6031 * 329 3936 * 6382 * * * * * 4640 * * 4505 5215 * * * * 82 0 * * * * * * 7474 0 0 V 83 1840 4409 * * * * * 2956 * 3232 * * * * * * 6047 1240 * * 83 16 * 6504 * * * * 7390 0 0 L 84 3302 4625 * * * * * 3003 * 2025 4049 * * 6238 * * * 1273 * * 84 13 6808 * 2000 415 * 0 7322 1000 1000 L 85 6128 * 2801 1865 * 5453 6305 5340 3842 3966 5420 5364 * 3572 3496 3941 3501 * * * 85 13 6787 * 2000 415 * 0 7292 1000 1000 E 86 5820 * 2983 3108 6118 * * 3414 3588 2232 4467 5968 * 5312 6151 3393 5795 3206 * 6201 86 0 * * * * * 0 7225 0 1000 L 87 * 4594 * * 5977 * * 1574 * 1341 4308 * * * * 4636 4980 3477 * * 87 0 * * * * 0 * 7223 0 1000 G 88 5526 * 4195 1511 * 5281 * * 2643 5584 6088 5054 * 2571 3635 4209 5750 * * * 88 0 * * * * * * 6924 0 0 P 89 3299 5355 2876 3469 * * * * 3954 5619 * 4705 3171 4966 4130 2085 3500 * * * 89 30 * 5586 * * * * 6890 0 0 S 90 3826 * * * 4684 * 3601 4304 4428 3304 4158 3738 * * 4375 3785 4457 4267 3470 2553 90 0 * * * * 0 * 6836 0 1000 I 91 5412 * * 6212 2560 * * 2496 * 1722 3316 * 4722 * * * * 2516 * * 91 67 4464 * 0 * * * 6791 1084 0 E 92 4069 5246 5489 1361 * * * 3679 5065 * 5355 5212 * 3488 3050 3901 * * * 3913 92 0 * * * * * * 6545 0 0 E 93 * * * 1791 * * 5230 4920 3089 4464 * 3942 3803 3058 2864 3404 * * * * 93 0 * * * * * * 6330 0 0 D 94 5220 * 924 3303 * 3137 * * * * * 3343 * * * 3771 4075 * * * 94 0 * * * * * * 6279 0 0 C 95 3230 4767 * 4601 4481 * * 3715 * 3005 * * * * 3186 4513 4786 1396 * * 95 0 * * * * * * 5701 0 0 Q 96 * * * 3195 * * 2878 * 2426 4548 * * 4551 1709 3383 3614 * * * * 96 102 * 3874 * * * * 5540 0 0 K 97 * * * * * * * * 992 3092 * * * 3337 1832 * * * * * 97 0 * * * * 0 * 4904 0 1000 Y 98 * * * * 3867 * * * * * * * * * * * * * 3863 213 98 0 * * * * * * 4594 0 0 I 99 * * * * * * * 1440 * 1911 3130 * * * * * * 3297 * 2741 99 0 * * * * * * 3975 0 0 A 100 1242 * * 2102 2576 * * 2501 * * * * * * * * * * * * 100 0 * * * * * * 3112 0 0 A 101 1140 * * * * * * * * 1695 * * * 2074 * * * * * * 101 0 * * * * * * 2646 0 0 A 102 2082 * * * * * * * 872 * * * 2201 * * * * * * * 102 0 * * * * * * 2646 0 0 L 103 * * * * * * * 2074 * 391 * * * * * * * * * * 103 0 * * * * * * 2646 0 0 E 104 * * * 1140 * * * * * * * * * * * 1695 2074 * * * 104 0 * * * * * * 2646 0 0 H 105 * * * * * * 0 * * * * * * * * * * * * * 105 0 * * 0 * * * 2235 0 0 //