HHsearch 1.5 NAME c3mjhD_ FAM FILE c3mjhD_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3mjhD_.a3m DATE Sat Aug 28 15:51:05 2010 LENG 33 match states, 33 columns in multiple alignment FILT 2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.2 EVD 0.4213 1.2572 SEQ >ss_dssp CCSSEECTTTCCEESSHHHHHHHHHHHTSSSCC >sa_dssp EEEEDCAEEDEEECECDEDCEECDCEECDDEEE >ss_pred CCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCC >ss_conf 987524589997108699999999998640589 >Consensus ssxgficpqcmksxxsaxelfkhyxxxhdxgnd >c3mjhD_ SSEGFICPQCMKSLGSADELFKHYEAVHDAGND >UniRef50_Q4S7F6(1-29:1396) Chromosome 13 SCAF14715, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4S7F6_TETNG E=6e-06 s/c=1.79 id=70% cov=91% --QGFICPQCMKSHNSAEELFKHYDLFHDTG-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 1000 0 0 S 2 * * * * * * * * * * * * * * * 0 * * * * 2 0 * * * * * * 1000 0 0 E 3 * * * 1000 * * * * * * * * * 1000 * * * * * * 3 0 * * * * * * 1211 0 0 G 4 * * * * * 0 * * * * * * * * * * * * * * 4 0 * * * * * * 1211 0 0 F 5 * * * * 0 * * * * * * * * * * * * * * * 5 0 * * * * * * 1211 0 0 I 6 * * * * * * * 0 * * * * * * * * * * * * 6 0 * * * * * * 1211 0 0 C 7 * 0 * * * * * * * * * * * * * * * * * * 7 0 * * * * * * 1211 0 0 P 8 * * * * * * * * * * * * 0 * * * * * * * 8 0 * * * * * * 1211 0 0 Q 9 * * * * * * * * * * * * * 0 * * * * * * 9 0 * * * * * * 1211 0 0 C 10 * 0 * * * * * * * * * * * * * * * * * * 10 0 * * * * * * 1211 0 0 M 11 * * * * * * * * * * 0 * * * * * * * * * 11 0 * * * * * * 1211 0 0 K 12 * * * * * * * * 0 * * * * * * * * * * * 12 0 * * * * * * 1211 0 0 S 13 * * * * * * * * * * * * * * * 0 * * * * 13 0 * * * * * * 1211 0 0 L 14 * * * * * * 1000 * * 1000 * * * * * * * * * * 14 0 * * * * * * 1211 0 0 G 15 * * * * * 1000 * * * * * 1000 * * * * * * * * 15 0 * * * * * * 1211 0 0 S 16 * * * * * * * * * * * * * * * 0 * * * * 16 0 * * * * * * 1211 0 0 A 17 0 * * * * * * * * * * * * * * * * * * * 17 0 * * * * * * 1211 0 0 D 18 * * 1000 1000 * * * * * * * * * * * * * * * * 18 0 * * * * * * 1211 0 0 E 19 * * * 0 * * * * * * * * * * * * * * * * 19 0 * * * * * * 1211 0 0 L 20 * * * * * * * * * 0 * * * * * * * * * * 20 0 * * * * * * 1211 0 0 F 21 * * * * 0 * * * * * * * * * * * * * * * 21 0 * * * * * * 1211 0 0 K 22 * * * * * * * * 0 * * * * * * * * * * * 22 0 * * * * * * 1211 0 0 H 23 * * * * * * 0 * * * * * * * * * * * * * 23 0 * * * * * * 1211 0 0 Y 24 * * * * * * * * * * * * * * * * * * * 0 24 0 * * * * * * 1211 0 0 E 25 * * 1000 1000 * * * * * * * * * * * * * * * * 25 0 * * * * * * 1211 0 0 A 26 1000 * * * * * * * * 1000 * * * * * * * * * * 26 0 * * * * * * 1211 0 0 V 27 * * * * 1000 * * * * * * * * * * * * 1000 * * 27 0 * * * * * * 1211 0 0 H 28 * * * * * * 0 * * * * * * * * * * * * * 28 0 * * * * * * 1211 0 0 D 29 * * 0 * * * * * * * * * * * * * * * * * 29 0 * * * * * * 1211 0 0 A 30 1000 * * * * * * * * * * * * * * * 1000 * * * 30 0 * * * * * * 1211 0 0 G 31 * * * * * 0 * * * * * * * * * * * * * * 31 0 * * * * * * 1211 0 0 N 32 * * * * * * * * * * * 0 * * * * * * * * 32 0 * * * * * * 1000 0 0 D 33 * * 0 * * * * * * * * * * * * * * * * * 33 0 * * 0 * * * 1000 0 0 //