HHsearch 1.5 NAME c3md1B_ FAM FILE c3md1B_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3md1B_.a3m DATE Sun Aug 29 00:48:39 2010 LENG 79 match states, 79 columns in multiple alignment FILT 106 out of 8202 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 8.7 EVD 0.4414 1.2608 SEQ >ss_dssp CEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC >sa_dssp EDCACABCACEEBDCECADECADECECCECADBDDCEEEEDCDCDACABAECDECADEABEECDDEECDEDCAEBEDDE >ss_pred CEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCEECCEEEEEEECC >ss_conf 9489966877998989999998511565510353166653311201579859799999999728969888899999759 >Consensus txxixVxnLpxxxtxxxlxxxfxxxgxxxxxxxxxxxxxxxxxxxafVxfxxxexaxxaxxxlxgxxxxgrxixVxxAx >c3md1B_ TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA >UniRef50_Q16PE9(3-83:580) L-caldesmon, putative n=1 Tax=Aedes aegypti RepID=Q16PE9_AEDAE E=3e-06 s/c=0.66 id=18% cov=100% THRLFVGNIPAGTGEDELKQEFSAYGPVMAIdlKTKPNPLNNSVDTFAFVNVQlDERTLWQCINEFRQQQYKGVYLNVSKA- >UniRef50_Q4UI15(102-187:373) RNA binding protein, putative n=3 Tax=Piroplasmida RepID=Q4UI15_THEAN E=1e-05 s/c=0.60 id=13% cov=100% SHTVYVSGLPKDTTISEVAEVFKKAGLIKIDPHttlpkikLYTDEKGELKSDGTVTFVNKESIDLAIRYLDNYHFrDNCVIHVEQA- >UniRef50_Q9FKY1(164-231:248) Similarity to ribonucleoprotein F n=3 Tax=Embryophyta RepID=Q9FKY1_ARATH E=8e-05 s/c=0.71 id=18% cov=86% -------GLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAK-DKMSIGSRYVEL---- >UniRef50_Q4D4P1(73-148:365) RNA-binding protein, putative (Fragment) n=1 Tax=Trypanosoma cruzi RepID=Q4D4P1_TRYCR E=0.0003 s/c=0.61 id=15% cov=95% ---LYIRNIPITVPQAQVERFLSTFGTLAFCAMREDH-YGNPVWVVYAEYDCLSCSKNALQRLHGSseHFYGPPVMVKYA- >UniRef50_C5KTC0(486-562:729) Nucleolysin TIA-1, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5KTC0_9ALVE E=0.0002 s/c=0.61 id=15% cov=99% TPRIYIGNLHDGMSENAIRDALQQAFGTVVAIKLHR-DRNGALAYGYITFEDNQTAERAVEEISNIRIANSSIRADFA- >UniRef50_B6KKT7(365-442:446) Polypyrimidine track-binding protein, putative n=3 Tax=Toxoplasma gondii RepID=B6KKT7_TOXGO E=7e-07 s/c=0.71 id=18% cov=100% TKTIFVANLDENATDEEVQKLFKEHGQVSKFTFKAPKNESAKTQMAMMEMGTEAEAVAAVMYLHNHELHGRSMKVAFS- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * 2284 332 * * * 1 0 * * * * * * 6029 0 0 F 2 4742 * * * 2169 * 3836 4800 3823 5067 4601 3891 4755 * 4656 3528 3665 3837 * 3145 2 0 * * * * * * 6840 0 0 N 3 * * 6179 * * * * * 3220 * * 3691 * * 1765 2627 1534 * * * 3 0 * * * * * * 8425 0 0 L 4 6291 * * * * * * 1697 * 1253 * * * * * * * 1948 * * 4 0 * * * * * * 8796 0 0 F 5 * 6334 * * 1490 * 6532 3210 * 5046 6476 * * * * * * 4361 3878 1496 5 0 * * * * * * 8802 0 0 V 6 5702 6448 * * 6523 * * 1596 * 3585 4599 * * * * * * 992 * * 6 0 * * * * * * 8809 0 0 G 7 3999 6687 4864 5156 6524 1596 6459 * 3214 5556 * 3915 * * 3263 3010 4275 * 5176 6744 7 0 * * * * * * 8818 0 0 D 8 * 6617 5290 6838 * 1962 6643 * 5760 * * 761 * 5523 5843 5047 * * * 6528 8 0 * * * * * * 8838 0 0 L 9 * * * * 4698 * * 2174 * 791 4598 * * * * * * 3052 * * 9 12 6864 * 0 * * * 8838 1000 0 N 10 4516 * 3001 5672 * 5631 5247 * 5867 6190 * 3846 940 * 6788 3101 5788 * * * 10 29 5661 * 0 * * * 8846 1811 0 V 11 4792 * 5257 4475 3140 5258 3854 * 4149 5113 * 5898 2506 4256 3981 4592 3691 4821 4067 3710 11 0 * * * * * * 8846 0 0 N 12 5069 6841 2836 3882 5786 3975 4849 * 3839 5124 * 2901 6675 5114 4477 2632 3433 6553 5099 5182 12 14 6727 * 0 * * * 8846 1000 0 V 13 3194 3890 * 6190 5138 6336 * 3041 5887 4025 4322 * * * * 5144 2696 1884 4428 5716 13 0 * * * * * * 8846 0 0 D 14 * 6336 2923 3927 * 5103 6496 6941 4023 * * 4151 6510 4148 5164 2863 1467 5699 * 6620 14 0 * * * * * * 8846 0 0 D 15 3929 * 2980 1535 6860 6336 5597 5240 3558 5676 5772 5983 5094 4528 4468 5904 4466 5270 4317 * 15 17 6401 * 2000 415 * * 8846 1000 0 E 16 3474 * 2128 2676 6760 5596 5022 6539 3364 6550 6635 3994 5675 3398 4617 4029 4716 5784 * * 16 0 * * * * * * 8846 0 0 T 17 3651 6859 1789 2077 5788 6586 4503 * 5601 * 6647 5836 * 3900 5536 3251 5291 4891 6401 * 17 0 * * * * * * 8846 0 0 L 18 6741 * * * 4128 * * 1828 * 1105 4034 * * * * * * 2989 * * 18 29 6761 6542 0 * * * 8846 1000 0 R 19 4829 * 5765 3666 6484 6349 5738 5207 1807 3417 3537 6756 * 4546 2423 4913 5993 4815 * 6646 19 26 5814 * 2224 347 * 0 8830 1718 1000 N 20 4014 * 2300 2572 6482 6777 4439 * 2915 * 6172 3076 * 3070 4654 5120 4803 * * 6389 20 14 6688 * 0 * * 0 8830 1000 1000 A 21 3888 6642 * 5066 2447 6393 4720 3200 5257 2125 4193 * * 5657 5780 * 5655 3495 6639 3578 21 0 * * * * * 0 8830 0 1000 F 22 4458 4386 * * 785 5780 6809 6602 * 2606 5674 6688 * * * * 5384 4508 6570 5882 22 45 5010 * 2414 300 0 * 8830 2345 1000 K 23 3248 * 4783 2901 6508 3036 * 6284 3353 5742 * 4127 6215 4780 3407 2128 5458 * * 6755 23 16 6510 * 2585 263 * * 8846 1000 0 D 24 3991 6656 3997 3631 * 4456 5866 4492 2927 6783 * 4390 3238 3205 4113 3268 4608 4268 * 5674 24 82 5046 5327 2122 377 * * 8846 2458 0 F 25 5578 4681 6475 5494 1665 * 4059 4276 * 3582 5716 5649 * 6383 6520 5671 6554 3580 6343 2264 25 43 6665 5657 2585 263 1514 622 8830 1000 2400 P 26 3831 5693 4573 6842 4451 794 6766 4631 6667 * * 5636 5045 6849 5805 5129 5854 4511 * 6499 26 58 5038 6794 2472 287 1787 494 8806 2428 2464 S 27 5132 6342 3292 3847 6462 3307 5072 4660 3301 4831 6263 4740 2499 5058 4307 4187 3520 5696 * * 27 40 5714 6941 3951 96 1194 829 8816 1633 2466 Y 28 * * 6840 5002 4111 5160 5482 2172 5054 3525 * 5500 4331 5791 5384 6478 3657 1887 6577 5169 28 27 5773 * 2210 351 541 1677 8847 1677 2272 L 29 4038 5818 5022 3497 * 4614 6533 3393 3427 3547 5757 3712 5019 4224 5023 4181 4173 2907 6766 6183 29 55 4740 * 1116 892 * 0 8844 2786 1000 S 30 4184 * 4139 3079 4637 3642 4950 4355 3018 6614 6278 4447 6651 3825 5223 3300 4155 3780 * 4709 30 27 5758 * 1000 1000 * 0 8844 1772 1000 G 31 3625 3623 5193 4323 4223 7017 5126 2843 6947 4018 6501 4668 6183 6386 4146 4068 4689 2341 4922 * 31 73 5059 5695 707 1368 * 0 8844 2333 1000 H 32 6519 * 3914 4249 6770 5537 5102 3163 2512 5519 5578 4266 5057 4282 3443 4428 4558 2774 * 5628 32 26 5786 * 2502 280 0 * 8828 1668 2312 V 33 4649 6786 4134 4663 3406 6705 6510 2605 4605 2542 4741 * 4409 5208 4730 5267 4172 3179 * 5536 33 12 * 6859 * * * * 8846 0 0 M 34 5153 5044 5366 * 4252 6641 5057 2432 4146 3126 4550 5840 3594 5785 3866 4061 5227 2717 * * 34 60 5042 6629 1350 718 0 * 8842 2364 1000 W 35 4430 7037 6327 4704 4049 5461 5081 3846 2758 3900 5699 4580 4228 3972 3048 5696 3927 4760 5640 4129 35 37 5955 6816 1825 478 * 0 8836 1169 1000 D 36 4292 * 2417 4204 5088 5248 3640 5472 3509 5106 6404 2766 4011 4786 3599 4484 5753 6582 * 5728 36 30 6489 6761 2807 222 902 1105 8827 1000 1758 M 37 5603 6685 3365 4655 6688 5935 4356 4709 3031 3838 5335 3971 3139 4313 2815 3766 4893 5853 * 6864 37 30 5585 * 1357 714 904 1102 8823 1765 1651 Q 38 3895 * 2440 3319 6983 3999 4743 5610 3239 5814 6410 3807 4534 3253 4434 3915 5726 5447 * 6541 38 41 * 5157 * * * 0 8836 0 1000 T 39 5749 6306 4279 5499 4943 3311 5195 5041 3608 4287 * 3505 3929 4691 4309 3200 2757 6379 5564 4710 39 0 * * * * 983 1017 8816 0 2873 G 40 5196 * 4045 5203 5407 2306 4176 5792 3304 5692 6363 3274 4689 3396 3715 4735 4424 5719 6401 5335 40 13 6755 * 3459 138 1061 941 8820 1000 1747 S 41 4668 * 6799 4052 4706 4811 5984 5216 2475 3609 * 4191 3077 3526 3277 3502 5125 6842 * 5378 41 10 7113 * 0 * 0 * 8830 1000 1000 S 42 4774 4528 4588 4200 5499 4010 3708 5709 2883 5016 6647 3967 3739 5225 3997 2703 5798 4722 * 5048 42 26 7057 6625 2322 322 * * 8846 1000 0 R 43 5816 6585 6766 5402 5539 3241 5090 6952 2230 4021 4716 4402 * 4692 2656 3849 3368 4950 6519 7116 43 18 6364 * 1000 1000 * 0 8830 1000 1000 G 44 4371 4886 4643 6411 4717 1594 5617 6444 5635 4402 5387 3804 4987 4401 3477 5747 3786 5787 * 5374 44 70 4392 * 1450 657 0 * 8830 3306 1000 Y 45 6539 3751 4729 5172 2032 5609 4532 3579 5567 7045 4919 5527 5819 4704 5781 6913 3811 4055 * 2641 45 57 5164 6530 2273 335 * * 8846 2074 0 G 46 1032 3687 * * 4602 1964 * 6212 5467 5667 * * * * 4948 * 5700 5139 * * 46 53 * 4791 * * 0 * 8825 0 1000 F 47 * 5721 * 5379 1096 4147 5938 3824 5813 3593 5583 6727 * 6727 6850 * * 5542 4274 3014 47 31 5577 * 2089 386 0 * 8809 1813 2658 V 48 5733 4992 * * 5721 6644 * 1966 * 4732 4982 * * 6395 * * * 877 * 4665 48 15 * 6609 * * * * 8846 0 0 S 49 4121 4680 4034 1985 * 5653 6639 5841 3262 5799 * 3944 * 3854 4569 5920 2741 4099 * 5668 49 35 6547 6210 0 * 0 * 8837 1000 1000 F 50 6632 * * * 792 * * 6553 * 4821 3470 * * * * * * 4313 * 2148 50 14 6746 * 1585 585 * 0 8807 1000 1000 T 51 2882 5023 3220 2912 * 5772 6869 6610 3898 5207 4876 3802 4795 4487 4747 3474 4067 4188 * 4875 51 29 5648 * 0 * * 0 8807 1712 1000 S 52 * * 2378 4728 * 5658 6756 * 4226 * 6855 2841 * 6327 3883 2649 1739 * * * 52 0 * * * * 0 * 8807 0 1000 Q 53 4173 * 5101 3106 5512 * 4243 4213 3675 4942 * 4759 2944 4048 2465 6656 5440 3761 6559 4877 53 15 6559 * 1585 585 * * 8846 1000 0 D 54 3739 * 3350 1437 * 5017 6626 5859 4208 5933 5769 6652 5051 3771 4677 3221 5866 5885 6871 6880 54 19 6284 * 2000 415 * * 8846 1000 0 D 55 2876 4387 2331 2585 * 6591 4908 4592 * * * 4509 * 4201 6890 2490 4208 5235 * * 55 14 6743 * 1585 585 * * 8846 1000 0 A 56 864 4514 * 6395 4665 * * 6284 6736 4318 3798 * * 4721 * 4968 5842 3136 * 6591 56 0 * * * * * * 8846 0 0 Q 57 3115 * 3305 2317 * * 7196 4482 3132 4287 5770 4009 * 3133 4248 4400 6697 5241 5806 5828 57 0 * * * * * * 8846 0 0 N 58 3192 * 4449 4445 5069 6542 6841 5744 2498 3999 * 3325 * 3749 2849 3855 3874 5685 * 5527 58 16 * 6509 * * * * 8846 0 0 A 59 673 3159 * * 5516 * * 4803 5237 4436 * * * * * 4721 * 3433 * * 59 11 * 7105 * * 0 * 8832 0 1000 M 60 5443 6540 * * 4406 * * 2150 4057 1963 3168 * 6621 * 3918 6612 * 2633 6862 6719 60 42 * 5116 * * 0 * 8850 0 1000 D 61 3254 6443 4127 2880 6700 5549 5156 5924 2637 * 6710 3947 * 2906 2920 4003 4698 6195 * * 61 32 * 5492 * * 0 * 8831 0 2377 S 62 3016 * 5671 2820 6582 4528 4739 4422 2960 5158 * 4271 * 3720 3669 3199 5006 4939 6380 5064 62 27 6718 6824 0 * 0 * 8825 1000 1785 M 63 6360 5640 * 6526 2879 4983 * 5245 5653 1114 2929 * * 6845 6612 5666 5768 4726 6590 4484 63 31 5534 * 1359 713 0 * 8847 1845 1000 Q 64 4990 * 2184 4810 * 6635 3180 * 4048 * * 2140 5167 2768 4545 3693 6609 * * * 64 11 7026 * 1000 1000 * * 8846 1000 0 G 65 6788 * 4857 4596 6842 1158 5198 * 3750 6867 * 3266 6727 3973 4678 4574 4867 6488 * 4488 65 38 5257 * 1538 609 * * 8846 2357 0 Q 66 4641 6668 * 6581 4713 4742 3653 3731 2336 4823 4809 6516 * 4497 4109 3353 3188 4797 * 3582 66 14 6718 * 0 * * * 8835 1000 0 D 67 * * 4868 3091 4684 * 4717 4202 2857 3504 3241 4854 4391 4328 4445 4772 4284 3589 * 4788 67 40 5194 * 974 1027 * * 8835 2424 0 L 68 6758 5627 * * 2339 * * 1991 * 1899 4979 * * * * * * 2783 4989 4487 68 0 * * * * * * 8835 0 0 N 69 6820 5547 3103 3503 4344 2588 4701 * 3233 3675 4969 3249 6638 4414 3712 6699 * * 5745 5162 69 14 6727 * 2322 322 * * 8835 1000 0 G 70 * * 2834 4729 5924 779 * * 6583 6639 6501 3257 6752 * 5654 4373 6757 * * * 70 40 5197 * 1813 483 * * 8835 2452 0 R 71 5717 6704 * 5090 5794 6552 4444 * 2146 * * 4169 6516 4408 1431 3795 5160 5134 * 5136 71 27 5779 * 1978 423 * * 8835 1758 0 P 72 4594 * 6725 4778 * 6750 4727 3800 2510 5113 * 4864 2385 6501 3106 5165 3234 3591 * 5700 72 14 6677 * 0 * * * 8835 1000 0 L 73 * 4898 * * 6634 6695 * 1644 * 1382 4022 * 6687 * * * * 2539 * * 73 0 * * * * * * 8828 0 0 R 74 6802 * 5027 3815 5057 6880 3856 5086 2521 6526 5054 4110 * 3928 2112 4789 4352 4195 * 4559 74 26 6618 6977 1000 1000 * * 8790 1000 0 I 75 5087 5336 * * 6436 * * 2397 * 2802 5598 * * * * * 6566 836 * 6680 75 0 * * * * 0 * 8775 0 1000 N 76 4327 * 3692 2574 6306 5754 * * 2745 * 5753 3768 * 2994 2851 2958 4650 * * * 76 0 * * * * * * 8725 0 0 W 77 6240 * * 4408 2339 * * 4787 3382 3342 * * 5261 6072 3005 * * 4600 2562 2886 77 0 * * * * * * 8605 0 0 A 78 328 * * * * * * * 6005 * * * * * * 2549 5874 * * * 78 0 * * * * * * 8179 0 0 A 79 214 * * * * * * * * * * * * * * 2860 * * * * 79 0 * * 0 * * * 3754 0 0 //