HHsearch 1.5 NAME c3l4hA_ FAM FILE c3l4hA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3l4hA_.a3m DATE Sat Aug 28 17:09:42 2010 LENG 109 match states, 109 columns in multiple alignment FILT 117 out of 482 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.3 EVD 0.4051 -0.8469 SEQ >ss_dssp CCTTSHHHHHHTSTTHHHHHHTSHHHHHHHHHCSHHHHHHHHHHHCTHHHHHHTTCHHHHHHHHTTCCTTSCCCTTEEEEECTTCCEEEEETTTTEEESS CSCCSCCCC >sa_dssp ECEECBBACAADBEDACECAEECEDADEDBDECEEBDDCADCADECCEBBDECCDDEEABDAACDBCCEEEECDEDCDDDEDDEEDDCBBBDEEECDCDB BBCBDCCEE >ss_pred CCCCCHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCC CCCCCCCCC >ss_conf 9644647787319448999860989998666668988866530236333221000112577654211468798998017797999899997789841311 773678898 >Consensus xllxspaxxxxtxxdfxxxLxxnxxaxxxyxxxsxlkhxxxxirrdxxxxxryxhxxxlvxxxnxfadxxxxLPxGWexxxdxxGrxYYinhxtxxTtWx xPrlpxxxG >c3l4hA_ LLLQSPAVKFITNPEFFTVLHANYSAYRVFTSSTCLKHXILKVRRDARNFERYQHNRDLVNFINXFADTRLELPRGWEIKTDQQGKSFFVDHNSRATTFI DPRIPLQNG >UniRef50_A9V217(859-964:1152) Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V217_MONBE E=1e-18 s/c=0.88 id=22% cov=94% -LAQEDARKLAERREFLERLRQDQARRAEEEARRAAALSMAQARRaqeEPRKRTKPTNGYMIWQQNEHFELSVGPLPPQWRKALDPTTeRFYFKDYQTQT TTWIDPR------ >UniRef50_C4Q6T1(1170-1275:1372) Expressed protein n=1 Tax=Schistosoma mansoni RepID=C4Q6T1_SCHMA E=5e-15 s/c=0.77 id=23% cov=95% -VLQSPALRSMTnsfSANDLAAYHNQSRIGIRYTKSSFDLAPELPVEPGLALMDHSNFYSKISSLIEMDNNSRLILPNGWSERRSGLGRSYYTCDSTRRS TWNHPLI----- >UniRef50_Q13474(308-385:957) Dystrophin-related protein 2 n=22 Tax=Tetrapoda RepID=DRP2_HUMAN E=2e-08 s/c=0.77 id=19% cov=44% -------------------------------------------------------HRDFGPGSQHFLSSSVQVP--WERAISPNKVPYYINHQAQTTCWD HPKM----- >UniRef50_Q5KAQ9(86-171:835) Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans RepID=Q5KAQ9_CRYNE E=0.0005 s/c=0.53 id=24% cov=34% -----------------------------------------------------------------------PLPPGWTAVMSkSHNRPFYYHKESNRTVW EKPTLPVE-- >UniRef50_Q09547(305-404:874) Protein F45H7.6, partially confirmed by transcript evidence n=4 Tax=Caenorhabditis RepID=Q09547_CAEEL E=2e-27 s/c=1.23 id=30% cov=93% ---KSDLIQFFQRDEFKTALYENQDAMQIYNECSVVRHAIHRIQKDLDPPSKFENQPLFVRFVNLFADITQPLPSGWE-CITMNNRTVFLNHANKETSFY DPRI----- >UniRef50_UPI00016E8DCF(307-393:929) UPI00016E8DCF related cluster n=3 Tax=Takifugu rubripes RepID=UPI00016E8DCF E=2e-12 s/c=0.84 id=30% cov=81% --LHTPPTSALTSADLLT---------QGFVQSS--RH--SSYRRNAHSSTREEQPVNPVVL-----PTSAGLPLGWEEKRDSKGRRYFINHRTRSTSWS RPPLQVD-- >UniRef50_D0NCQ3(11-46:260) CUG-BP-and ETR-3-like factor, putative n=2 Tax=Phytophthora infestans T30-4 RepID=D0NCQ3_PHYIN E=8e-05 s/c=1.33 id=16% cov=34% ------------------------------------------------------------------ADAQAPSSSQWSEHNAPNGRKYYYNAVTGESTWE RP------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * * * 0 * * * * * * * * * * 1 0 * * * * * * 1280 0 0 L 2 * * * * * * * * * 328 * * * * * * * 2297 * * 2 0 * * * * * * 2976 0 0 L 3 2591 * 3400 * * * * * * 600 3652 * * * * * * * * * 3 0 * * * * * * 3171 0 0 Q 4 * * * 3866 * * 3420 * 2298 * * 3631 * 1028 3972 * * * * * 4 0 * * * * * * 3464 0 0 S 5 * * * 2895 * * * * * * * 3885 * * * 487 3566 * * * 5 0 * * * * * * 3564 0 0 P 6 * * 2239 * * * * 3994 * * * * 463 * * * * * * * 6 0 * * * * * * 3656 0 0 A 7 563 * * * * 4340 * * * 3434 * * 2812 * * 4693 * * * * 7 0 * * * * * * 3656 0 0 V 8 4693 4340 * * 4249 * * 3434 * 1993 * * * * 3067 * 3748 1635 * * 8 0 * * * * * * 3656 0 0 K 9 * * * * * * * * 1687 2465 * * * 2266 2145 3748 * * * * 9 0 * * * * * * 3656 0 0 F 10 3748 * * * 931 * * * * 2233 4324 * * * * 2853 * * * * 10 0 * * * * * * 3656 0 0 I 11 3067 * * * 3434 * * 1569 * 1866 2853 * * * * * * 4709 * * 11 0 * * * * * * 3656 0 0 T 12 * 3412 * 3067 * * * 5544 * * * * * 3434 * 3994 713 * * * 12 215 2853 * 1585 585 * * 3656 1000 0 N 13 * * * * * * 4803 * 3994 * * 4845 * 4249 886 1873 * * * * 13 0 * * * * * * 3656 0 0 P 14 2232 * 3434 * * * * * 3994 * * * 1076 * 3067 4709 * * * * 14 0 * * * * * * 3656 0 0 E 15 * * 1015 1448 * * * * * * * 2853 * * * * * * * * 15 0 * * * * * * 3656 0 0 F 16 * * 2983 * 317 * * * * 3820 * * * * * * * * * * 16 0 * * * * * * 3807 0 0 F 17 * * * * 1588 * * * 3561 1699 * * 4062 * * 3821 * 4140 * 3518 17 0 * * * * * * 3807 0 0 T 18 2983 * 4140 3175 * * * * * * * 3755 * 3821 4356 3518 1234 * * * 18 106 * 3820 * * * * 3807 0 0 V 19 2216 * * * 2508 * * 3127 * 2793 4467 * * * 3170 * * 2367 * * 19 0 * * * * * 0 3877 0 1000 L 20 * * * * * * * 4050 * 315 * * * * * * * * * 2880 20 0 * * * * * 0 3877 0 1000 H 21 3759 * * * 3820 * 1141 * 4206 * * * * 3008 3239 4487 * * * 3781 21 0 * * * * * 0 4085 0 1000 A 22 4049 * * 2770 * * * * * * 3823 2067 * 2683 * 2947 2334 * * * 22 0 * * * * * 0 4085 0 1000 N 23 * * 3239 * * * 4471 * * * * 652 * 3137 * 4206 4487 * * * 23 0 * * * * * 0 4085 0 1000 Y 24 4510 * 5062 4806 * 4241 * * * * 3215 * 2668 1476 * 3101 4599 * * 4181 24 104 3851 * 1000 1000 * 0 4038 1000 1000 S 25 2843 * 1528 4510 * 4202 * * * * * * * 3769 2600 3006 * 4241 * * 25 22 * 6076 * * * 0 4038 0 1000 A 26 492 * * * * * * 3175 * * * * * * 3236 3793 * * * * 26 0 * * * * * 0 4097 0 1216 Y 27 * * * * * 2084 * 4614 4758 2135 3766 * * * 3236 * * 4468 * 2096 27 0 * * * * 552 1654 4097 0 1216 R 28 2257 * * 4555 * * * 3179 3894 * * 4829 * 1833 2510 3657 * * * * 28 0 * * * * * 0 4132 0 1000 V 29 5104 * * 3327 * 4181 * 2251 * 2075 3648 * * * 3179 * 3291 5254 * 4316 29 0 * * * * * 0 4132 0 1000 F 30 * * * 2563 2349 * * * * * * 3894 * * * 3900 * * * 999 30 0 * * * * 0 * 4132 0 1000 T 31 * * * 3343 4337 * * * * 3925 4611 1765 3917 4371 * * 1828 4191 * * 31 0 * * * * * * 4140 0 0 S 32 3021 * * 2904 * * * * 2803 * * 5220 * 2553 2356 2270 * * * * 32 0 * * * * * * 4140 0 0 S 33 * 3884 * * * * * 3859 * * * 2076 * 3917 3343 1338 * * * 3925 33 0 * * * * * * 4140 0 0 T 34 2786 * * * * * * * 3638 * * * 4771 3111 3343 1161 3708 * * * 34 81 * 4191 * * * * 4140 0 0 C 35 2469 3191 * * 3101 3790 * * * * 4241 * * 3769 * 2317 4232 2827 * * 35 0 * * * * * 0 4038 0 1000 L 36 3396 * 3197 * 6112 * * 3970 * 1062 * * * 3855 * * * 3302 * 3872 36 0 * * * * 0 * 4149 0 1000 K 37 2708 * * * * * 6143 * 1017 3282 * * * * 2084 * * * * * 37 0 * * * * * * 4246 0 0 H 38 3282 * * * * * 895 * * 2420 3929 * * * * * * * * 3226 38 99 * 3911 * * * * 4246 0 0 X 39 3865 * * 3821 * * * 2883 * 3909 1643 * 2470 * * 3368 * * * 4032 39 0 * * * * * 0 4180 0 1216 I 40 * * * 3184 * * * 2118 * 2102 3380 * * * * * 3838 1939 * * 40 97 * 3938 * * 552 1654 4141 0 1216 L 41 2974 * * * * * 2944 * * 2580 3297 4799 4429 * * 1829 3789 4730 * * 41 0 * * * * * 0 4119 0 1164 K 42 * * * * * * * * 1497 * * * 3150 2662 1988 3025 * * * * 42 89 * 4062 * * * 0 4119 0 1164 V 43 3190 * * * * * * 951 * * * * * 3753 * * * 2045 * 4144 43 0 * * * * * 0 4060 0 1549 R 44 * * * 3104 * * * * * * * 4484 * 3713 711 3683 * * * 3753 44 0 * * * * * 0 4060 0 1549 R 45 * * * * * * * * 3713 * * 4363 2392 3683 846 4312 * * * * 45 167 3190 * 1585 585 * 0 4060 1000 1549 D 46 * 4542 832 3240 * 3110 4423 * * * * 4096 * * * * 3870 * * * 46 0 * * * * 923 1081 4068 0 1549 A 47 2628 * * * * * * 3856 * 2508 * 3943 1125 * * 5147 4582 * * * 47 0 * * * * * 0 4143 0 1164 R 48 1604 * 3942 * * 4854 3191 * * * * * 3943 3820 2454 3256 4686 * * * 48 0 * * * * * 0 4143 0 1164 N 49 * 3781 * * * * 4006 4805 2954 2688 * 3634 3942 2576 3856 4151 * 3672 * 5164 49 0 * * * * * 0 4143 0 1164 F 50 * * * * 1173 * * * 4055 3856 3176 * 2592 * 3405 4151 * * * * 50 0 * * * * * 0 4143 0 1164 E 51 4854 * 2762 2504 * 4686 * * 4758 * * * 4582 2802 2600 3942 2730 * * * 51 0 * * * * * 0 4143 0 1164 R 52 * * 3220 * * * 3176 * 2349 * * * * 4055 1118 * 3943 * * * 52 0 * * * * * 0 4143 0 1164 Y 53 * * * 4151 3310 * * 4055 * * * * 3405 * 3856 3176 * * * 976 53 0 * * * * 383 2100 4143 0 1164 Q 54 * * 4887 2227 * * * * * * * 3288 * 1310 3399 * 3502 3972 * * 54 0 * * * * * 0 4260 0 1000 H 55 * * * * 3288 * 928 * * * * 2757 * 4219 * 4536 3396 * * 4947 55 95 * 3972 * * * 0 4260 0 1000 N 56 * * * * * 2754 3247 * * * 4099 1604 4104 2801 * * * * * 2666 56 60 * 4607 * * * 0 4033 0 1143 R 57 * * * * * * * * 3244 * * * 2078 * 1607 2748 * 3383 * 3563 57 89 * 4067 * * * 0 4067 0 1498 D 58 * * 1097 3692 * * 3946 * 3173 2984 3474 3989 * * * * * * * * 58 0 * * * * * 0 3957 0 1855 L 59 4177 * * * 2968 * * 2315 * 1035 * * 3989 * * 3946 * * * * 59 0 * * * * * 0 3957 0 1855 V 60 4218 * * * * 4141 * 3946 * 4177 * * * * * 3173 * 815 3474 * 60 0 * * * * 1516 621 3957 0 1855 N 61 1977 * * * * 4401 * * 3372 * * 5503 4189 3561 2705 2480 4366 4075 * * 61 0 * * * * * 0 4129 0 1502 F 62 * * * * 1781 4189 * * * 1316 3907 * * 3561 * 4287 * 4328 * * 62 88 * 4075 * * * 0 4129 0 1502 I 63 * * * * * * * 2244 * 2169 * 3464 * * 4244 4103 2895 2117 * * 63 96 3956 * 1000 1000 1692 534 4009 1000 1793 N 64 * * * 2912 * * * * * * * 633 * 2698 3875 * * * * * 64 0 * * * * * 0 3910 0 1608 X 65 4293 4000 4223 * 4705 * 3043 4768 5381 3500 2686 * * 3714 5241 2748 3092 * * * 65 0 * * * * * 0 3923 0 1608 F 66 4890 * 3761 * 438 * * * * * 3945 * * * * 4382 * 4600 * * 66 0 * * * * * 0 3935 0 1608 A 67 644 * 4580 4653 * * * * * 4395 * 4399 4112 * 5167 4150 * 4591 * * 67 0 * * * * 233 2743 4291 0 1608 D 68 4263 * 1183 5767 * 5676 * * * 4359 * 3581 4572 2813 * 4150 * 4420 4324 * 68 74 5310 5320 0 * * 0 4494 1000 1000 T 69 3616 * 5541 4521 * * * 3820 5268 4480 * 5833 2196 5804 6133 1909 2647 5796 * * 69 0 * * * * * 0 4629 0 1143 R 70 4715 * 3252 4511 * 4880 5039 * 5160 4686 * * * 1938 3032 2335 3722 5338 * * 70 0 * * * * * 0 4686 0 1143 L 71 4549 4843 4853 5410 * 3362 * 4790 3568 2914 3108 5519 4537 2871 3305 3847 * 5279 * * 71 33 * 5486 * * 307 2382 4756 0 1143 E 72 * * 2213 2209 * 5241 * 5678 4858 * * * 1285 4726 * 6694 6330 6935 * 6752 72 0 * * * * 329 2293 4829 0 1156 L 73 * * * * 5798 * * 5840 * 168 5060 * * * * 6073 6256 5934 * * 73 0 * * * * * 0 4978 0 1000 P 74 * * * 6321 6509 * * * * 5121 * * 122 * * 5109 * * * * 74 23 * 5981 * * * 0 5007 0 1000 R 75 3216 * 3779 3035 5656 5436 6534 * 6112 5214 * 5041 1885 6514 3998 3484 6301 4671 * 3532 75 0 * * * * * 0 4998 0 1157 G 76 * * 4575 6606 * 485 4490 * * * * 4545 4664 4896 5060 6221 6186 * * 5973 76 0 * * * * 307 2385 4995 0 1157 W 77 * * * * * * * * * 5927 * * * * * * * * 97 4367 77 0 * * * * * 0 5018 0 1000 E 78 5752 * 5118 894 6509 * 6800 4736 4389 5929 * * * 4101 4412 3203 4691 5055 * 6588 78 23 7209 6800 1000 1000 * 0 5018 1000 1000 I 79 3115 6533 * 2236 5239 * * 4129 2736 * 3734 5829 4375 4715 4715 4085 3946 4088 * 5155 79 0 * * * * 396 2059 5013 0 1199 K 80 2235 3995 * 5845 5296 4003 4354 4677 3062 4671 * * * 6181 2693 6140 4705 3374 * 4177 80 0 * * * * * 0 5018 0 1000 T 81 5373 * 6339 3653 3743 * 6342 2839 3485 3496 4363 5216 * 5143 3776 4763 3610 3319 * 3580 81 36 7143 5845 1000 1000 * 0 5018 1000 1000 D 82 3547 5676 1057 6660 * * 5633 * * 5685 * 4795 * * * 3122 2225 * * * 82 42 5131 * 0 * 402 2040 5002 1996 1111 Q 83 3632 * 3982 2941 * 3871 5205 6502 4479 * 6800 * 2099 3164 3025 4355 5397 7041 * 5837 83 99 3907 * 0 * * 0 5018 2358 1000 Q 84 5326 * 2070 3498 * * 4852 * 4179 6227 * 2352 5302 3977 5344 3344 3285 5776 * 5923 84 108 3788 * 1405 684 * 0 5018 2640 1000 G 85 6704 * 5877 * * 347 6275 6410 5592 * * 4026 * 6809 7044 5900 5617 * * 5217 85 24 6602 7376 0 * * 0 5018 1000 1000 K 86 6329 * 5075 3720 * 4168 7031 5325 2261 6534 6842 5909 * 3412 1429 5489 5838 4815 6885 * 86 40 5196 * 0 * 0 * 5019 2009 1249 S 87 5596 6541 5526 5676 5829 * 5250 3381 4104 3805 * * 2655 4712 5284 4419 3118 2338 5932 4082 87 16 6504 * 0 * * * 5018 1000 0 F 88 * * * * 2020 * 5750 5506 * 5847 * * * * * * * 4803 * 600 88 0 * * * * * * 5018 0 0 F 89 * * * * 1338 * * * * * * * * * * * * * * 726 89 0 * * * * * * 5018 0 0 V 90 5129 6917 * * 4255 * 6492 1681 6606 3995 5896 * * * * 6822 6228 1991 5971 2263 90 0 * * * * * * 5018 0 0 D 91 * 5438 1808 * * * 3351 * * * * 838 * * * 5924 * * 5847 * 91 0 * * * * * * 5018 0 0 H 92 5107 * 4151 3665 6535 * 873 * 4364 5972 7150 6943 5974 6865 5164 4723 4048 5058 * 5737 92 0 * * * * * * 5018 0 0 N 93 2959 * 5017 3209 5993 * 6632 3718 3809 5371 5909 2670 6809 3283 5196 4902 4737 2782 7386 * 93 0 * * * * * * 5018 0 0 S 94 4538 6354 3576 4434 * * 5897 * 5196 4030 7041 3199 5750 6340 5627 4148 1043 * * * 94 0 * * * * * * 5018 0 0 R 95 * * 6504 5783 6361 2772 5462 * 2218 * 5875 4285 * 2312 1807 5709 * * * * 95 0 * * * * * * 5018 0 0 A 96 3555 6617 * 2846 * * 6800 4162 3315 6165 5960 * * 4010 2993 3378 2404 3357 * * 96 0 * * * * * * 5018 0 0 T 97 6279 * * * * * * 5909 * * * * 5999 * 6279 2451 450 5207 * * 97 0 * * * * * * 5020 0 0 T 98 6332 6196 6728 * * * 4896 * 6566 * * * 5905 2082 5066 2308 1268 5606 * * 98 0 * * * * * * 5024 0 0 F 99 * 6232 * * 2546 * * * * 6394 * * * * 5898 5055 * * 588 3453 99 0 * * * * * * 5024 0 0 I 100 6615 6316 2811 1805 4555 * 5131 2981 7236 4462 5343 4412 * 4905 5295 5644 3562 4450 * 5811 100 0 * * * * * * 5009 0 0 D 101 5301 * 1589 * 5947 * 2197 5942 3276 6891 * 5021 3690 * 2779 5270 * * * * 101 0 * * * * * * 5009 0 0 P 102 * * * * * * * * * * * * 0 * * * * * * * 102 23 5981 * 2807 222 * * 5009 1000 0 R 103 4816 * 5153 4650 * * * 5411 3465 3451 * 5329 6606 5215 973 * 3741 4481 * * 103 0 * * * * * * 4925 0 0 I 104 4845 * * 5418 6321 4695 5698 3055 5355 1250 3550 6030 5801 5934 6381 4733 4934 3493 * * 104 142 3411 * 1201 823 * * 4905 1790 0 P 105 5647 * 5422 5480 * * * * 4657 5797 * * 593 4949 4637 3318 5788 5444 * * 105 0 * * * * * * 4556 0 0 L 106 3643 * * * * * * * * 2100 5781 * * 5108 4313 * 1740 1787 * * 106 37 5308 * 1585 585 * * 4493 1000 0 Q 107 * * 2935 2203 * 4708 * * 5016 * * 2694 4155 2276 5229 * 3245 4893 * * 107 0 * * * * * * 4398 0 0 N 108 * * 1815 4629 * * * * 4773 3696 * 2598 4877 * * 1833 3611 * * * 108 0 * * * * * * 4255 0 0 G 109 * * * * * 0 * * * * * * * * * * * * * * 109 0 * * 0 * * * 3788 0 0 //