HHsearch 1.5 NAME c3k6gA_ FAM FILE c3k6gA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3k6gA_.a3m DATE Tue Oct 19 11:28:32 2010 LENG 93 match states, 93 columns in multiple alignment FILT 36 out of 40 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.4 EVD 0.4343 0.9997 SEQ >ss_dssp CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHSSCTTSCCCCCHHHHHHHTCCCHHHHHHHHHHHCHHHHHHHHHHHC >sa_dssp EDEEEDDDDDDCCEEBCEECEDEEEDADEBBDCABDCDEBACCCCEEDEBEDEDDCBDEDBBDCAEDEDEECCEEBCEDABEEBBDDADEDDE >ss_pred CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHCC >ss_conf 977747899999999999838428999999995032379999997469899899998978999997199999999999838237999996319 >Consensus xxxxxxxqaxklixxlxxexxxdxxxvTxallxxSGdlxxxrxFLxxgxxxxxxxIWTxEDDxxLxsxDxxxixkLxkKHGxexvxxRxxFle >c3k6gA_ VSQPEVGAAIKIIRQLXEKFNLDLSTVTQAFLKNSGELEATSAFLASGQRADGYPIWSRQDDIDLQKDDEDTREALVKKFGAQNVARRIEFRK >UniRef50_UPI00017B2508(306-394:395) UPI00017B2508 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B2508 E=6e-25 s/c=1.28 id=36% cov=92% --QPDLPLLKQSLVSLLKMQLLDLVSVTKALLKTSGDFSEARLLLldsiGSGQH------WHCSDDDLLMSGDPVVREQLREKYGEEGIAKRIAFLE >UniRef50_C5DTR6(696-787:791) ZYRO0C10692p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DTR6_ZYGRO E=3e-20 s/c=1.08 id=25% cov=94% -------QAEKLVQDLCDEAGVRKTFSTSILTALSGDLMVfPRYFLNMfrynvNPPPSVPGIWTREDDRMLISNKDEDIRILTKKHGAGRIEMRRKFVE >UniRef50_B0ERT8(63-142:156) Putative uncharacterized protein n=2 Tax=Entamoeba RepID=B0ERT8_ENTDI E=3e-23 s/c=1.36 id=28% cov=84% ----------KIIAELKNQFGVDERVVIYALYACSGDVELTKKFFSEGKVIP----WTCEEDQILVSNDTDKIFQIIMNRGKTETEKRCHF-- >UniRef50_C4QVP3(467-562:567) DNA-binding protein involved in either activation or repression of transcription n=1 Tax=Pichia pastoris GS115 RepID=C4QVP3_PICPG E=2e-13 s/c=0.79 id=26% cov=51% ------------------------------------------HFLLTGewELENTRGIWTGRQDEMLRASNLDDLHKLIDLHGKERVETR----- >UniRef50_B6Q590(323-392:405) Transcription factor Rap1, putative n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6Q590_PENMQ E=0.0002 s/c=0.67 id=28% cov=42% -------------------------------------------------------VWTEEDDEALTGQDGRAMERVMKKHGSEIFDERWQFLE >UniRef50_C5PGU6(499-574:587) Putative uncharacterized protein n=2 Tax=Coccidioides RepID=C5PGU6_COCP7 E=0.0002 s/c=0.61 id=29% cov=37% -------------------------------------------------------IWTEEDDSLHDSSDSIDIKKLEEKHGTENFDIR----- >UniRef50_A5DJV1(435-530:537) Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5DJV1_PICGU E=5e-11 s/c=0.71 id=23% cov=42% -------------------------------------------------------IWTPETDAMLCSGNPADIKRLQQTHDHDEIKRRGNFLK >UniRef50_B6GZ74(350-395:406) Pc12g09140 protein n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6GZ74_PENCW E=9e-06 s/c=1.11 id=24% cov=40% -------------------------------------------------------VWTAEDDSCLQAGEYSRVQRALAKHGSEAYKDRWEY-- >UniRef50_A6SP73(827-895:903) Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana B05.10 RepID=A6SP73_BOTFB E=1e-08 s/c=0.88 id=32% cov=40% -------------------------------------------------------VWTLRDDNALKKRKGKEYERIRGKHGDGRVNARIKF-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * V 1 * * * * * * * * * * * * * * * * * 0 * * 1 0 * * * * * * 1000 0 0 S 2 * * * * * * * * * * * * * * * 0 * * * * 2 0 * * * * * * 1000 0 0 Q 3 * * * * * * * * * * * * * 0 * * * * * * 3 0 * * * * * * 1496 0 0 P 4 * * * * * * * * * * * * 0 * * * * * * * 4 0 * * * * * * 1496 0 0 E 5 * * 525 1713 * * * * * * * * * * * * * * * * 5 0 * * * * * * 1644 0 0 V 6 * * * * * * * * * 1653 * * * * * * * 552 * * 6 0 * * * * * * 1791 0 0 G 7 * * * * * 552 * * * * * * 1653 * * * * * * * 7 0 * * * * * * 1791 0 0 A 8 2699 * * 3589 * * * * * 2991 * * * 650 * * * * * * 8 0 * * * * * * 2844 0 0 A 9 561 * * * * * * * * 2991 * * * * * * * 2348 * * 9 0 * * * * * * 2844 0 0 I 10 3589 * * 1182 * * * 1878 2991 * * * * * * * * 3675 * * 10 0 * * * * * * 2844 0 0 K 11 * * * * * * * * 804 2852 * 3252 * 2445 * * * * * * 11 0 * * * * * * 3110 0 0 I 12 * * * * * * * 1646 * 1051 * * * * * 3773 4015 3989 * * 12 0 * * * * * * 3126 0 0 I 13 * * * * * * * 1650 * 2868 1732 * * * * * * 2039 * * 13 0 * * * * * * 3126 0 0 R 14 2997 * * 2391 * * * * * * * * * 1388 2128 * * 3773 * * 14 154 * 3304 * * * * 3126 0 0 Q 15 * * 1250 2884 * * 2210 * * * 3785 * * 3781 * 3598 * * * * 15 0 * * * * * 0 2939 0 1000 L 16 3913 * * * 2973 * * * * 467 3598 * * * * * * * * * 16 0 * * * * * 0 3031 0 1000 X 17 * 2395 * * * * * * 2891 3665 1681 2773 * * 3889 * * 3823 * * 17 0 * * * * * 0 3002 0 1000 E 18 * * 1355 1638 * * * * 3743 * * 2938 * * * 3598 * * * * 18 0 * * * * 0 * 3031 0 1000 K 19 * * 4215 637 * * * * 3126 * 3897 * * 3044 * * * * * * 19 0 * * * * * * 3196 0 0 F 20 2432 4055 * * 1053 * * * * * * * * 3897 * * 2723 4215 * * 20 0 * * * * * * 3196 0 0 N 21 4144 * * * * 892 4118 * 2597 3897 * 4108 * * * 4142 * * * * 21 0 * * * * * * 3196 0 0 L 22 * * * * * * * 2004 3442 1959 * * * * * * 4118 1540 * * 22 87 4088 * 1585 585 * * 3196 1000 0 D 23 * * 816 * * * * * * * * * * * 1211 * * * * * 23 106 * 3824 * * * * 3196 0 0 L 24 * * * 3004 * * * * 1607 870 * * * * * * * * * * 24 0 * * * * 0 * 3146 0 1000 S 25 3098 * * * * * * * 3824 3131 * 4073 * * 2362 4108 2569 2198 * * 25 0 * * * * * * 3196 0 0 T 26 * * 3771 3442 1795 * * * * * * * * * * 2989 1740 3044 * * 26 0 * * * * * * 3196 0 0 V 27 * * * * 3824 * * * * * * * * * * 2126 4081 641 * * 27 0 * * * * * * 3196 0 0 T 28 * * * * * * * 3044 * * * * * * * 4081 287 * * * 28 0 * * * * * * 3196 0 0 Q 29 * * * * * * * * 2198 * * * * 1727 * 1479 * * * 3044 29 0 * * * * * * 3196 0 0 A 30 641 * * * * * * 1795 * * * * * * * 3824 * * * * 30 0 * * * * * * 3196 0 0 F 31 * * * * 2546 * * 3824 * 399 * * * * * * * * * * 31 0 * * * * * * 3196 0 0 L 32 * * * * * 4081 * * * 760 * * * * * * 2126 * * 3044 32 0 * * * * * * 3196 0 0 K 33 1781 4073 * * * 3824 * * 943 * * * * * * 4081 * * * * 33 0 * * * * * * 3196 0 0 N 34 3442 3044 * * * * * * * 1795 * 1727 * * * 3824 2989 * * * 34 106 3824 * 0 * * * 3196 1000 0 S 35 * * * * * * * * * * * 3771 * * * 110 * * * * 35 0 * * * * * * 3196 0 0 G 36 * * * * * 0 * * * * * * * * * * * * * * 36 0 * * * * * * 3196 0 0 E 37 * * 406 2026 * * * * * * * * * * * * * * * * 37 0 * * * * * * 3196 0 0 L 38 * * * * 2989 * * * * 647 * * * * * * * 2087 * * 38 0 * * * * * * 3196 0 0 E 39 * * * 1515 * * * * 3442 * 1479 * * * * 2328 * * * * 39 0 * * * * * * 3196 0 0 A 40 1727 * * 2989 * * * * * 3044 * * * * 3442 * * 1479 * * 40 641 1479 * 0 * * * 3196 1601 0 T 41 2198 * * * * * * * * * * * 1479 * * * 1240 * * * 41 0 * * * * * * 3196 0 0 S 42 * 4142 * * * * * * 3044 * * * * 3442 842 2538 * * * * 42 0 * * * * * * 3196 0 0 A 43 4204 * * * * * 2972 * 3138 3131 * * * * * 4262 * 3535 * 1145 43 0 * * * * * * 3231 0 0 F 44 * * * * 269 * * * * 3131 * * * * * * * * * 4167 44 0 * * * * * * 3231 0 0 L 45 * * * * 3138 * * * * 174 * * * * * * * * * * 45 362 2171 * 2124 376 * * 3231 1727 0 A 46 4204 * * * * 2597 4167 * * 2826 * 2080 * 3263 3783 2554 * * * * 46 0 * * * * * * 3231 0 0 S 47 3153 * * 3138 * * * * * * 2080 3535 * * * 2187 2110 * * * 47 264 2578 * 2322 322 * * 3231 1370 0 G 48 * * * * 3855 609 * * * * * 1861 * * * * * * * * 48 81 4191 * 1000 1000 * * 3231 1000 0 Q 49 * * * 4191 * * * * 3138 * * * 1861 1607 * 2819 * * * 3535 49 0 * * * * * * 3231 0 0 R 50 * * 3535 * * * 3131 * 3855 4191 * * 1861 * 1802 * * 3138 * * 50 175 * 3131 * * * * 3231 0 0 A 51 3995 * * 4116 * * 3250 2417 * 2981 3048 3743 2278 * * 4089 * * * * 51 0 * * * * * 0 3084 0 1086 D 52 * * 1334 3250 * * * * * * * 2057 2998 3743 * 4106 * * * * 52 193 * 2998 * * * 0 3084 0 1086 G 53 * * * * * 1394 * 2832 * * * 3595 * * * * 2409 2265 * * 53 0 * * * * * 0 2808 0 1678 Y 54 * * * * 3365 * 3052 * * * * * 1213 * 3886 * * * * 1819 54 185 3052 * 0 * * 0 2808 1000 1678 P 55 * * * * * 1265 * * * * * * 776 * * * * * * * 55 125 3595 * 2322 322 * 0 2808 1000 1678 I 56 * * * * * * * 860 * 4439 * * * * * * * 1311 * * 56 0 * * * * 0 * 4026 0 1678 W 57 * * * * * * * * * * * * * * * * * * 0 * 57 0 * * * * * * 4237 0 0 S 58 * * * * * * 4335 4793 * * * * * * * 2940 351 * * * 58 0 * * * * * * 4237 0 0 R 59 3743 3263 * 3064 * 4507 4222 * 2666 4008 * * 3331 5459 2241 4303 * * * * 59 0 * * * * * * 4237 0 0 Q 60 5037 * 5090 739 * 4303 * * 4793 4691 * * * 4005 3268 4335 * * * * 60 0 * * * * * * 4237 0 0 D 61 * * 275 3717 * * * * * * * * * 4507 * * 4222 * * * 61 0 * * * * * * 4237 0 0 D 62 * * 0 * * * * * * * * * * * * * * * * * 62 0 * * * * * * 4237 0 0 I 63 3601 * 2968 1618 * * * 5281 3878 3639 * 4957 * 4194 3594 3895 * 4236 * * 63 0 * * * * * * 4237 0 0 D 64 2649 2560 3346 4500 * * * 2878 * 3330 2559 * * * * 5090 4691 5037 5338 * 64 0 * * * * * * 4237 0 0 L 65 5060 * * * * * 5134 4226 * 258 * * * * * * * 4276 * * 65 0 * * * * * * 4237 0 0 Q 66 * 4222 4232 2139 * * * 5296 3489 3914 4335 * * 2353 2790 * 4614 4194 * * 66 0 * * * * * * 4237 0 0 K 67 2026 * * * * 3003 * * 2411 * * 5185 * * 4303 1639 5545 5563 * * 67 0 * * * * * * 4237 0 0 D 68 3329 5037 3440 5117 * 1681 * * 3705 * * 2630 5459 4181 4957 3491 * * * * 68 0 * * * * * * 4237 0 0 D 69 * * 692 3264 * * * * 4116 * * 2607 * * * 5185 5178 * * * 69 0 * * * * * * 4237 0 0 E 70 4793 * 4239 2626 * 2274 * * * 4507 * * 2311 5090 * 3138 3118 * * 4691 70 0 * * * * * * 4237 0 0 D 71 3262 * 2515 3078 * * 5356 5134 4186 * * 5489 4106 * 2205 4112 * 3653 * 4056 71 0 * * * * * * 4237 0 0 T 72 3044 5338 2219 2481 * 3401 * * 4194 * 5368 5708 * 5090 4691 * 3242 3415 * * 72 0 * * * * * * 4237 0 0 R 73 * * * * * * * 1288 * 2805 3334 * * 4793 2819 * * 3174 * 4064 73 0 * * * * * * 4237 0 0 E 74 4088 * 5368 1753 4194 * 4507 * 2145 * * 5356 * 3014 4189 3432 * * * * 74 0 * * * * * * 4237 0 0 A 75 3945 * * * * * 5117 5296 1818 5185 5021 * * 2362 1646 * 5338 * * * 75 0 * * * * * * 4237 0 0 L 76 4691 * * * * * * 3127 * 572 * * * * * * * 2522 * * 76 0 * * * * * * 4237 0 0 V 77 * * * 2751 * * * 1816 * 3262 3933 * * 3136 3193 * 4487 2942 * * 77 0 * * * * * * 4237 0 0 K 78 3592 * 4507 2360 * 4957 * * 1492 * 4194 * * 2580 5060 4691 * * * * 78 0 * * * * * * 4237 0 0 K 79 * * * * * * * * 327 4507 * 4194 * * 4303 * 4222 * * * 79 0 * * * * * * 4237 0 0 F 80 * * * * 2934 * 560 * * * * * * 4303 4194 * * * * 3546 80 90 4048 * 1585 585 * * 4237 1244 0 G 81 * * 4222 * * 79 * * * * * * * * * * * * * * 81 0 * * * * * * 4237 0 0 A 82 2234 * 3320 3495 * * 4210 5004 3329 * * 4330 * * 5098 2391 3579 * 4042 * 82 0 * * * * * * 4240 0 0 Q 83 4084 * 3139 1226 * 1885 * * 4389 * * * * 5233 * * 4184 * * * 83 0 * * * * * * 4240 0 0 N 84 2946 * * 2390 * 3128 * 5410 * 3930 * 2427 * * 1786 * * * * * 84 0 * * * * * * 4392 0 0 V 85 * * * * 1936 * * 1855 * * 4057 * * * * * 4021 1730 * 4683 85 0 * * * * * * 4392 0 0 A 86 2439 * 2987 1695 * * * * 3363 * * 2776 * 5012 * * 3233 * * * 86 0 * * * * * * 4392 0 0 R 87 2664 * 3978 2984 * * * 5167 2515 * 2412 5297 * * 2553 5431 4551 * * * 87 0 * * * * * * 4392 0 0 R 88 * * * * * * * * * * * * * * 0 * * * * * 88 0 * * * * * * 4392 0 0 I 89 * 3892 * * 3169 3969 * 2318 2237 3762 * * * * 5026 * * 4037 2477 * 89 0 * * * * * * 4199 0 0 E 90 2811 * * 1916 * * 3892 4664 2735 * * 3969 * 4343 2733 4524 * 5136 * * 90 0 * * * * * * 4199 0 0 F 91 * * * * 361 * * * * * * * * * * * * * * 2177 91 0 * * * * * * 4174 0 0 R 92 * * * * * * * * * 712 * * * 3634 2165 * * 3536 * * 92 0 * * * * * * 3247 0 0 K 93 * * * 426 * * * * 1966 * * * * * * * * * * * 93 0 * * 0 * * * 3236 0 0 //