HHsearch 1.5 NAME c3jxoB_ FAM FILE c3jxoB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3jxoB_.a3m DATE Sun Aug 29 01:03:24 2010 LENG 85 match states, 85 columns in multiple alignment FILT 111 out of 1132 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.6 EVD 0.4556 1.3271 SEQ >ss_dssp CCCCCSEEEEETTEEEEEEECCTTCTTTTCBGGGCCCCTTEEEEEEEETTEEECCCTTCBCCTTCEEEEEEETTTHHHHHHHHHC >sa_dssp EEECEDDDEDEDDDCCABBDAEDEBDADDDDCEEBECCDDBEBDCACCEEEECDCEDEBDADDEABACACABEEBCDDBCECADE >ss_pred CCCCEEEEECCCCEEEEEEEECCCCCCCCCCHHHCCCCCCCEEEEEEECCEEECCCCCCEECCCCEEEEEECHHHHHHHHHHHCC >ss_conf 9741031513797699999987873414775546358898499999988887627842298889899999769999999998489 >Consensus nxxxxxxxxxxxxxxixexxvxxxsxxxgkxlxelxlxxxxxIxaIxRxxxxxiPxxxxxlxxgDxvxixxxxxxxxxixxxlxG >c3jxoB_ NLYFQGMIPLEQGIEFLSVNVEEDSPVVGKKLKDLPLPRDSIIAAIVRGGVLVVPRGDTEILSGDKLYVIVSAEAKETVEETLLG >UniRef50_B9L6I0(284-370:382) TrkA n=10 Tax=Epsilonproteobacteria RepID=B9L6I0_NAUPA E=0.0008 s/c=0.52 id=19% cov=99% NILEEFVYSVDTPLDLEEITVSKKSWVAYKKLKEVHLRELFNVTVVGIKEEngkfIPIPKGDVVLKPNDVLLVIGTGKDMRKARKVI-- >UniRef50_B4S374(380-462:462) TrkA-N domain protein n=2 Tax=Chlorobiaceae RepID=B4S374_PROA2 E=0.0002 s/c=0.57 id=18% cov=85% ------------DAEVIELVAADRSPITKKRLGKLRSTlqdKGILVAGIITNGTCILTDDDTLIEPNERAIVVSATRSLKDAQQLF-- >UniRef50_Q0APQ0(144-226:457) TrkA-N domain protein n=3 Tax=Alphaproteobacteria RepID=Q0APQ0_MARMM E=5e-05 s/c=0.59 id=20% cov=95% ---FNTAVFSGGRVQLLGLRLDEHSPVAGSTteqVMELFPDLRLAVVGVQREQTLFIPKMHDPLLAGDDVYVVTESRQVRRILDIF-- >UniRef50_A6C1M7(149-221:449) TRK potassium uptake system protein (TrkA-2) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C1M7_9PLAN E=1e-05 s/c=0.69 id=19% cov=86% -----------GEVVIQVLDVQPGVKADGIELRNLKLPSGVRVGLISDGKNTSIAGADNIIQAGQIVTLIGTQENIDQVHRMF-- >UniRef50_B0R6N9(136-217:225) TrkA domain protein n=15 Tax=Halobacteriaceae RepID=B0R6N9_HALS3 E=1e-06 s/c=0.66 id=20% cov=96% ----TAIADLAEHLQVVQLTVTDEAPMRGYSISELELPAGARLLAFgKHDASLALPLPSETLETGDRIAVLAEFDTLDSVRQILVG >UniRef50_UPI0001C35444(138-221:226) TrkA domain-containing protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35444 E=0.0002 s/c=0.56 id=18% cov=91% -----DFISLNDDIAVSEIRLT--SVLEGRSVMEAGIRNrfGLNIVAMERERDTTIDIQPTyRFRKEDVIVVIGKRDHINKFERYL-- >UniRef50_Q7MRB1(139-212:470) Putative uncharacterized protein n=1 Tax=Wolinella succinogenes RepID=Q7MRB1_WOLSU E=8e-07 s/c=0.74 id=20% cov=88% -------IGLGEG-EVMQASVPFGSSFAYRTIGSIQ-QKNWKIVALYRGGRMILAKYSLVIQPNDSLLIVGEPSVLSEVYRRI-- >UniRef50_Q8DT33(134-216:217) Putative potassium uptake protein TrkA n=2 Tax=Streptococcus mutans RepID=Q8DT33_STRMU E=5e-05 s/c=0.59 id=19% cov=95% --HFDSVLSLGNGhstVEIVRFNIPP--LLDKKKIEEVLPIHEVRVIALSRKNETFIPNRETLLHSRDVIHLAASSDTANQLRERFI- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * * * * * * * * * * 562 * * * 1631 * * * * 1 0 * * * * * * 4800 0 0 L 2 * * * * 3667 * * 2304 * 1779 3777 * * 3819 * 2732 3842 3981 * * 2 0 * * * * * * 5152 0 0 Y 3 * * 3918 4065 2581 * 2665 * 4055 3148 * 3204 * 4405 * 3150 * * * 3212 3 0 * * * * * * 5501 0 0 F 4 * * * 4000 1219 * * * * 2250 2336 * * * * 4777 * 3983 * * 4 0 * * * * * * 6469 0 0 Q 5 3356 * 3933 2347 5908 * * 5362 * 2924 * 4433 * 3139 * 3373 2243 * * * 5 0 * * * * * * 6983 0 0 G 6 4248 * 1486 3305 5983 4368 5855 * * 6017 * 4045 5535 6215 4921 2968 3286 4907 * * 6 53 5443 6289 2585 263 * * 7273 1000 0 M 7 4755 * * * 2924 * * 3994 5744 1553 3287 5864 * * * 4338 5917 2480 * 4498 7 0 * * * * 0 * 7307 0 1000 I 8 3556 6466 5914 5745 3122 * * 2109 * 2263 5223 6103 * 5958 5633 5604 * 2795 * 3812 8 0 * * * * * * 7482 0 0 P 9 3983 * 3652 3023 4972 4143 4312 * 3509 5926 * 5429 2396 5793 5282 2444 4309 * * * 9 17 * 6393 * * * * 7488 0 0 L 10 3360 * * 4126 3030 * * 3579 6436 1321 * * 6064 * 6268 3507 6547 3518 * 6218 10 55 4740 * 0 * * 0 7508 2295 1000 E 11 3516 * 2437 2128 6334 2782 6166 6850 4921 * * 6311 * * 5479 2411 4540 5669 * * 11 91 4027 * 687 1400 0 * 7647 3078 1000 Q 12 * * 3570 2006 * 1330 * 6228 6055 * * 3736 6524 4855 * 4578 3983 * * 6028 12 86 4547 6061 0 * * * 7724 2892 0 G 13 4115 * 2346 3870 * 2001 4813 * 2617 * * 4241 6757 4211 4138 4448 6604 * * * 13 114 4088 5840 584 1586 * 0 7733 3443 1000 I 14 2922 * 6602 * 3691 7205 6488 3020 6065 1989 5288 * * 6733 4825 6210 5456 2527 * 3438 14 17 * 6412 * * 0 * 7668 0 1963 E 15 4100 * 4108 1678 * 4986 5521 5604 6733 5712 * 4652 * 3502 3934 3353 3744 3911 * 4783 15 37 5319 * 1988 419 0 * 7746 2386 1000 F 16 5384 * * * 5376 * * 1979 * 1755 3653 * * 6363 * 6503 4974 1902 * * 16 28 6503 6971 2585 263 * * 7786 1000 0 L 17 3937 5658 * 4029 3919 5360 6833 2629 * 2611 4069 * * * 4511 4440 4805 2377 6429 4653 17 41 5667 6945 537 1685 * 0 7837 1719 1000 S 18 4704 6616 5037 886 * 3672 6864 * 5048 5232 * * * 4690 3777 3646 5279 5738 * * 18 0 * * * * 956 1045 7835 0 1704 V 19 5217 * * * 2854 6773 6517 2232 * 2164 5824 6357 * * 6413 * 5991 2042 * 3667 19 23 * 5971 * * * 0 7784 0 1000 N 20 5186 * 4649 3573 6349 6481 5095 4885 3110 3692 * 5056 3663 5117 2756 4721 2893 3178 * * 20 14 * 6710 * * 1528 614 7784 0 2273 V 21 3881 * * * * 6253 * 1890 * 2722 * 6498 * * * * 5620 1101 * * 21 59 6676 5053 0 * 1580 588 7780 1000 2258 E 22 3306 6860 3845 4873 6721 5159 5523 6333 3829 4444 5563 4178 2309 6280 4431 3368 3122 4996 * 5782 22 64 6950 4822 0 * 332 2282 7739 1000 3212 E 23 3103 * 3773 1954 * 5640 7044 6839 2806 * * 5561 2309 6826 5226 3682 7085 6592 * 5713 23 73 6803 4639 1000 1000 322 2323 7750 1000 3326 D 24 4741 * 2404 3801 6711 2195 6490 * 3107 * 6296 2842 6903 4813 4624 4113 4505 * * 6899 24 98 6535 4182 2000 415 1306 748 7740 1000 3379 S 25 2989 4689 3707 * 5770 4429 5669 * 5861 * 6347 5068 6018 6888 * 877 5397 6340 6562 * 25 0 * * * * 1108 899 7723 0 4249 P 26 4289 * 6649 3693 5511 5082 * 4338 3492 4133 * 5157 1726 * 3578 3578 5150 5579 4694 5098 26 19 * 6255 * * 0 * 7762 0 3086 V 27 3715 5610 * 6548 3153 * * 2499 5636 1864 4102 * * * 6608 6422 6435 2963 4252 4788 27 0 * * * * * 0 7774 0 1000 V 28 2361 4289 3827 3807 * 6687 4586 3066 * 3997 5913 5131 * 5752 6548 4353 4061 2354 * * 28 0 * * * * 0 * 7774 0 1000 G 29 * * 3348 6667 6705 734 4864 * 4777 6343 * 2954 5882 6668 6441 * * * * 5037 29 0 * * * * * * 7856 0 0 K 30 6668 * 6791 * 6831 * 4626 4495 1418 3940 6153 5159 6303 3436 2529 5775 5332 3976 6572 6561 30 0 * * * * * * 7856 0 0 K 31 3773 * 7055 * * * 4455 * 3027 4349 * 6203 3122 4497 3450 2480 2012 * * 6566 31 15 6568 * 1585 585 * * 7856 1000 0 L 32 5526 * * * * * * 1775 * 1234 5627 * 6203 * * * * 2207 6550 * 32 36 5359 * 1000 1000 * * 7856 2220 0 K 33 2826 * 5078 4671 5726 3065 6644 7258 2350 6920 4124 4405 * 4938 3044 2824 6106 5915 * * 33 11 7020 * 1000 1000 * * 7856 1000 0 D 34 5530 * 1667 1530 * 7125 6232 * 4370 * * 4240 * 3237 4808 4883 6679 6644 * * 34 11 * 6998 * * * * 7856 0 0 L 35 3950 6601 * * 5126 * * 1991 * 1176 4641 6824 * * * 4034 5249 3927 * * 35 86 4109 * 994 1006 0 * 7857 3636 1000 P 36 3765 5741 3313 2967 6568 3457 5210 6636 3074 5793 * 3646 4201 4111 2824 4283 6526 6935 * * 36 108 4141 6013 1291 758 * * 7856 3667 0 L 37 4856 6911 * 4703 2977 6746 * 3077 6904 1395 4615 5269 5106 4859 4303 5504 * 5316 4708 6801 37 108 4151 5974 1193 830 0 * 7792 3646 1344 P 38 4526 * 6479 5672 6835 4992 5801 5116 4594 4838 * 4818 1371 4522 2227 7225 4997 * 5733 5249 38 85 4122 * 1374 703 0 * 7796 3433 1750 R 39 3416 * 3282 2491 5275 5097 4830 * 2735 6568 5568 4573 4777 4545 5514 3542 3704 5116 * 5718 39 212 2873 * 844 1176 * * 7856 5038 0 D 40 6914 * 2509 3481 * 1700 5110 * 3157 6034 * 3513 4276 6833 4050 5085 6041 6756 * * 40 24 5923 * 1311 745 * * 7856 1772 0 S 41 2625 3301 6433 6447 3990 5797 * 3229 * 3573 6650 * * * * 3258 3127 2659 6845 4450 41 23 5988 * 1269 773 * * 7856 1699 0 I 42 3881 * * 6365 6833 5249 5121 3175 7204 2464 5676 3957 * 4279 2641 5732 2864 3244 * * 42 14 6709 * 1000 1000 * * 7856 1000 0 I 43 5289 * * * 4263 * * 1213 * 3539 * * 5004 * * * 6719 1457 * * 43 34 7255 5910 1585 585 * * 7856 1000 0 A 44 2641 5030 * * 5727 3836 * 1989 * 3170 6394 5704 * * * 5681 4280 2031 * 6580 44 30 5580 * 1052 950 * 0 7800 1751 1666 A 45 1300 5725 * 5887 6203 2569 * 5704 * 3494 4321 6323 * 6813 6750 2955 5747 4972 * 7009 45 36 5327 * 933 1070 0 * 7800 1688 1666 I 46 6433 * * * 6561 6972 5694 1194 * 3313 5147 * * * * * 7020 1522 6964 5597 46 40 5178 * 634 1492 * * 7856 2256 0 V 47 3579 * 6617 3447 4491 5278 4962 4028 3303 4105 4778 * * 4649 3304 4874 3857 3185 5084 3812 47 37 5319 * 1102 905 * * 7856 2238 0 R 48 * 6953 3784 6706 6759 5998 4237 6070 4480 * * * 5806 4719 522 * 5642 * * * 48 38 5265 * 1422 674 * * 7856 2360 0 G 49 4387 * 2316 3156 6245 2054 4316 * 3497 5833 * 2537 6625 * 4759 * * 6732 * * 49 43 5095 * 703 1375 * * 7856 2316 0 G 50 5272 7080 2281 4272 6708 1375 6512 6887 5924 * * 2889 6721 4830 4624 4698 6589 * * 6788 50 24 5914 * 1004 996 * * 7856 1779 0 V 51 5690 * 4047 2394 6668 3996 4473 5179 2586 5982 6788 4113 * 3978 3180 4406 4296 4254 * 6482 51 58 4663 * 1116 893 * * 7856 3070 0 L 52 3983 5577 6365 3871 4020 6245 * 3565 * 2983 4324 5227 3972 6996 5831 3997 3096 2969 4683 4734 52 28 5702 * 1220 809 * * 7856 1704 0 V 53 5194 * 5737 5120 3137 * * 1745 5370 2852 4207 6721 4902 6756 4376 5458 4588 3467 6614 5005 53 29 5662 * 546 1665 * * 7856 1780 0 V 54 4623 * * 5392 4984 7255 5257 1705 6441 3052 5548 4618 4693 5062 4581 5227 3890 2724 * 6100 54 95 3972 * 264 2580 * * 7856 3686 0 P 55 2928 * 6784 5514 5726 5740 * 5871 6768 6566 6872 6589 517 * * 5701 5702 7179 * * 55 48 5329 6972 1216 812 * * 7856 2231 0 R 56 4969 6808 3365 4710 7076 3808 4374 5141 3639 5551 * 3392 4384 4642 3507 3133 2728 5677 6470 * 56 13 6829 * 0 * * 0 7857 1000 1000 G 57 3809 * 4333 5988 6568 1303 6769 6695 4197 5269 5493 6227 2573 5308 3935 5429 6545 6829 * 6470 57 31 5559 * 0 * 0 * 7857 1631 1000 D 58 5149 * 1778 2773 * 4089 4417 * 4604 * * 2901 5879 3864 4896 3385 * 6203 6232 6448 58 33 6572 6365 0 * * * 7856 1000 0 T 59 5568 * 2766 3726 4429 6801 6825 5613 6967 3609 6821 * 5757 5520 5753 5408 1329 4467 * 4406 59 29 5654 * 0 * 0 * 7834 1711 1000 E 60 * 6512 6831 3548 6732 6343 4621 2649 4162 4775 4592 * 4633 5466 3408 4836 3826 1855 * * 60 0 * * * * * * 7856 0 0 I 61 * * * * 3678 6625 * 1934 * 955 6512 * 6433 * * * 6614 3502 * 6245 61 0 * * * * * * 7856 0 0 L 62 3944 6572 6791 2133 * 6705 4296 * 3482 4236 4513 5194 6667 2786 2901 5413 4474 6365 * 4509 62 0 * * * * * * 7856 0 0 S 63 1896 6651 * 2623 5355 5497 * 6177 4764 5941 * 4563 2242 4968 * 4000 4818 4871 * 5167 63 0 * * * * * * 7856 0 0 G 64 * * 3161 5532 * 822 5677 * 4787 5240 * 2837 * 6706 6870 4749 * * 6303 6524 64 0 * * * * * * 7856 0 0 D 65 * * 252 6582 * 6667 6836 * * * 6759 * * 5216 6829 4842 4855 * * 5888 65 0 * * * * * * 7856 0 0 K 66 4599 * 5546 4107 * * 4817 2978 3724 4145 6949 6935 * 3607 2370 3884 3822 2850 6914 7050 66 0 * * * * * * 7856 0 0 L 67 5599 * * * 6232 * * 2303 * 1387 * * * * * * * 1488 * 5345 67 0 * * * * * * 7856 0 0 Y 68 4406 * * * 4104 * 5524 2304 * 2250 4284 * * 5125 6994 4539 4294 2750 6872 3045 68 0 * * * * * * 7856 0 0 V 69 4000 6589 * * 3367 6920 * 1984 * 2313 4679 * * * * * 6762 1645 * * 69 16 6534 * 0 * * * 7856 1000 0 I 70 3028 * * 5557 3468 * * 2459 * 2118 3860 * * * 6217 6756 4783 2209 * 6721 70 0 * * * * * * 7792 0 0 V 71 2106 4526 * * 6198 1645 * 4991 * 4895 5304 * * * * 3283 3383 3544 * 5940 71 0 * * * * * * 7792 0 0 S 72 4064 6739 3106 2815 * 6747 6298 * 3061 6863 5895 3949 4480 4626 3093 3844 2740 6527 * 6969 72 0 * * * * * * 7783 0 0 A 73 3572 * 5210 3564 6513 4572 * 6999 3016 5838 * 4225 2089 4359 3590 3848 4073 4230 * * 73 0 * * * * * * 7783 0 0 E 74 3025 * 2150 2367 6762 5475 6527 * 3050 * * 4833 5606 3776 3968 3454 * * * 6503 74 13 * 6746 * * * * 7783 0 0 A 75 2597 * 2447 4265 * 4310 5498 7034 4364 4683 5970 3633 * 3683 5676 3719 4359 4005 * 4300 75 0 * * * * * 0 7802 0 1000 K 76 3038 6735 * 5212 * * 6444 2374 5946 1681 4431 * 6392 * 5477 5236 5874 2501 * 6871 76 0 * * * * * 0 7802 0 1000 E 77 4203 * 2887 2567 * 4764 5770 * 3381 6360 6321 3593 3771 3943 4096 3104 4101 * * 6411 77 0 * * * * 0 * 7778 0 1000 T 78 3590 * 3309 2240 * * * 5756 2477 * * 4786 * 3338 2562 5163 4720 6476 * 5336 78 0 * * * * * * 7783 0 0 V 79 3530 * * * 3480 * * 2244 * 1746 6336 6732 * * * * 4328 2109 6472 * 79 19 * 6262 * * * * 7777 0 0 E 80 3830 * 4812 2588 4333 5176 6124 3400 3260 3561 4603 4493 * 4271 3010 5387 6839 4975 * 5237 80 0 * * * * 0 * 7742 0 1000 E 81 4084 * 2775 2425 * * 5576 * 2490 * * 5263 * 2948 2580 3977 * * * 5415 81 0 * * * * * * 7730 0 0 T 82 4407 * * 4281 4832 * * 2776 * 1519 4036 6521 5715 * 4396 6017 4195 3104 6011 5001 82 0 * * * * * * 7665 0 0 L 83 * * * * 1320 * * 3854 * 1063 6417 * * * * * * 4642 * * 83 0 * * * * * * 7458 0 0 L 84 * * * 4633 * 2924 * 2612 * 3093 3056 * * 3945 3428 4314 2960 3469 * * 84 0 * * * * * * 6061 0 0 G 85 * * * * * 0 * * * * * * * * * * * * * * 85 0 * * 0 * * * 5249 0 0 //