HHsearch 1.5 NAME c3jcuw_ FAM FILE c3jcuw_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3jcuw_.a3m DATE Sat May 28 08:25:57 2016 LENG 54 match states, 54 columns in multiple alignment FILT 12 out of 16 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.4 EVD 0.4588 1.4973 SEQ >ss_dssp CCSCCCCCTTSCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCSCCC >sa_dssp EEEEEEEDEEDEDEEECDDEEDCEEDEDEECEEEDEEEEECDEEEEDEEEEEEE >ss_pred CCCHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >ss_conf 941011466774141046724789999999999999887305778640036689 >Consensus lVDeRlxteGtGlxlGlnxxxLgxILxgvfxliwslyfxxxxxlxxdedsGLxL >c3jcuw_ LVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYASGLEEDEESGLSL >UniRef50_B9S4T1(79-132:132) Photosystem II reaction center W protein, chloroplast, putative n=10 Tax=Magnoliophyta RepID=B9S4T1_RICCO E=1e-18 s/c=1.75 id=80% cov=102% LVDERLSTEGTGLPFGLSNNLLGWILLGVFGLIWSFYTVYTSTLDDDEDSGLSL >UniRef50_Q9SPI9(60-115:115) Photosystem II reaction center W protein, chloroplastic n=3 Tax=Chlamydomonas reinhardtii RepID=PSBW_CHLRE E=4e-09 s/c=1.12 id=53% cov=102% LVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKDLGdfEDADDGLKL >UniRef50_Q7XYI4(91-146:147) Photosystem II protein PsbW n=2 Tax=Chlorarachniophyceae RepID=Q7XYI4_BIGNA E=5e-05 s/c=0.87 id=42% cov=102% LVDSRLNGDGAGIPLGLNDSRLFFILAGVFTTVWGVYATSVKGIsdNDDEDSGMGL >UniRef50_A2SY30(75-128:128) Photosystem II reaction center W protein n=1 Tax=Mesostigma viride RepID=A2SY30_MESVI E=2e-13 s/c=1.43 id=38% cov=102% IIEDAMYTEGAGIALGLNSGALGFVMLGAFTLVWSLYSSYTRSLDSSEDGGLDL >UniRef50_Q01EE1(97-156:156) Photosystem II 13kD Protein, chloroplast (Putative) (IC) n=1 Tax=Ostreococcus tauri RepID=Q01EE1_OSTTA E=6e-09 s/c=1.03 id=42% cov=102% IVDDRLNGDGTGLPLGINDGALGIILASVPLAIFSLYFIAGKqdagieNGGKNDDSGLSL >UniRef50_Q9AXN8(93-144:158) PSII subunit PsbW (Fragment) n=5 Tax=Physcomitrella patens RepID=Q9AXN8_PHYPA E=6e-07 s/c=1.06 id=60% cov=80% LVDERLSTEGTGLGLGISNTKLTWILVGVTALIWTLYLLTPR------------ >UniRef50_C1FIQ5(60-118:118) Photosystem II 13kD protein, chloroplast n=2 Tax=Micromonas RepID=C1FIQ5_9CHLO E=7e-07 s/c=0.93 id=38% cov=102% VVDERLNGDGTGLILGINDEILGFILLTIPALVFSQFFYAQKDDgiaagGENDDSGLSL >UniRef50_Q9AXP0(54-109:109) PSII subunit PsbW (Fragment) n=1 Tax=Physcomitrella patens RepID=Q9AXP0_PHYPA E=5e-06 s/c=0.93 id=58% cov=102% LVDERLSTEGTGLGLGISNTKLTWILVGVTALIWALYFFVLLDVGQrvTMTSGLDL >UniRef50_C0PQQ7(96-149:149) Putative uncharacterized protein n=3 Tax=Picea sitchensis RepID=C0PQQ7_PICSI E=6e-14 s/c=1.45 id=73% cov=102% LVDERLSTEGTGLGLGLSNPLLGWILVGVFTLIWILYFTTYSNVKEDEDSGLSL # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * 2030 * 615 * * * * * * * 3288 * * 1 0 * * * * * * 2425 0 0 V 2 * * * * * * * 2779 * * * * * * * * * 227 * * 2 0 * * * * * * 2425 0 0 D 3 * * 227 2779 * * * * * * * * * * * * * * * * 3 0 * * * * * * 2425 0 0 E 4 * * 2030 645 * * * * * * * * * * * 3110 * * * * 4 0 * * * * * * 2425 0 0 R 5 2779 * * * * * * * * * * * * * 227 * * * * * 5 0 * * * * * * 2425 0 0 M 6 * * * * * * * * * 648 1466 * * * * * * * * * 6 0 * * * * * * 2425 0 0 S 7 * * * * * * * * * * * 1240 * * * 1214 * * * 2779 7 0 * * * * * * 2425 0 0 T 8 * * * * * 1240 * * * * * * * * * * 794 * * * 8 0 * * * * * * 2425 0 0 E 9 * * 1240 794 * * * * * * * * * * * * * * * * 9 0 * * * * * * 2425 0 0 G 10 * * * * * 0 * * * * * * * * * * * * * * 10 0 * * * * * * 2425 0 0 T 11 1935 * * * * * * * * * * * * * * * 437 * * * 11 0 * * * * * * 2425 0 0 G 12 * * * * * 0 * * * * * * * * * * * * * * 12 0 * * * * * * 2425 0 0 L 13 * * * * * * * 1935 * 661 * * * * 3238 * * * * * 13 0 * * * * * * 2425 0 0 P 14 2779 * * * * 2283 * 3288 * * * * 872 * * * * * * * 14 0 * * * * * * 2425 0 0 F 15 * * * * 1593 * * * * 581 * * * * * * * * * * 15 0 * * * * * * 2425 0 0 G 16 * * * * * 0 * * * * * * * * * * * * * * 16 0 * * * * * * 2425 0 0 L 17 * * * * * * * 1536 * 865 * * * * * * * 3238 * * 17 0 * * * * * * 2425 0 0 S 18 * * * * * * * * * * * 813 * * * 1214 * * * * 18 0 * * * * * * 2425 0 0 N 19 * * 1240 * * * * * * * * 1214 * * * 2779 * * * * 19 0 * * * * * * 2425 0 0 N 20 * * * 3288 * 2030 * * * * * 2149 2572 * * 3110 2803 * * * 20 0 * * * * * * 2425 0 0 L 21 2030 * * * * * * 3288 2803 1798 * * * * 3110 * * 3238 * * 21 0 * * * * * * 2425 0 0 L 22 * * * * * * * * * 0 * * * * * * * * * * 22 0 * * * * * * 2425 0 0 G 23 * * * * 3110 433 * * * * * * * * * * 2803 * * * 23 0 * * * * * * 2425 0 0 W 24 * * * * 1459 * * 3333 * * * * * * * * * * 897 * 24 0 * * * * * * 2425 0 0 I 25 * * * * * * * 418 * * * * * * * * * 1990 * * 25 0 * * * * * * 2425 0 0 L 26 * * * * * * * * * 227 2779 * * * * * * * * * 26 0 * * * * * * 2425 0 0 F 27 2217 * * * 2580 * * * * 1278 * * * * * * * 2283 * * 27 0 * * * * * * 2425 0 0 G 28 * * * * * 432 * * * * * * * * * 3333 3288 4132 * * 28 0 * * * * * * 2425 0 0 V 29 2779 * * * * * * 3288 * * * * * * * * * 411 * * 29 0 * * * * * * 2425 0 0 F 30 * * * * 610 * * * * * * * 2311 * * * 2803 * * * 30 0 * * * * * * 2425 0 0 G 31 2025 * * * * 1593 * * * 3333 * * * * * * 1627 * * * 31 0 * * * * * * 2425 0 0 L 32 3333 * * * * * * * * 559 * * * * * * 2173 * * * 32 0 * * * * * * 2425 0 0 I 33 * * * * * * * 915 * * 3238 * * * * * * 1459 * * 33 0 * * * * * * 2425 0 0 W 34 * * * * 2311 * * * * * * * * * * * * * 325 * 34 0 * * * * * * 2425 0 0 A 35 2016 * * * * 3110 * 4007 * * * * * * * 1302 2563 * * * 35 0 * * * * * * 2425 0 0 L 36 * * * * 2545 * * 3238 * 987 * * * 3288 * * * 3110 * * 36 0 * * * * * * 2425 0 0 Y 37 * * * * 2658 * * * * * * * * * * * * * 3238 443 37 0 * * * * * * 2425 0 0 F 38 3110 * * * 680 * * * * 4156 * * * * * 2779 4102 * * * 38 0 * * * * * * 2425 0 0 V 39 * * * * 3520 * * 1931 * 4156 * * * * * 2779 2490 2570 * 3288 39 0 * * * * * * 2425 0 0 Y 40 2311 * * * * 3238 * * * * * * * * * 3110 3079 3520 * 1430 40 0 * * * * * * 2425 0 0 A 41 3170 * * * * 3333 * * * 3520 * * 4156 2263 * * 1943 3110 * 4007 41 0 * * * * * * 2425 0 0 S 42 * * * * * * * * 1240 3520 * * * * 2309 1798 * * * * 42 160 3250 * 2585 263 * * 2425 1000 0 G 43 * * 1655 * * 2502 * * * * * 2543 * * * 1879 4002 * * * 43 0 * * * * * * 2406 0 0 L 44 * * 3236 * * 3289 * 3070 * 1001 * * * * * * * 2533 * * 44 368 2151 * 1769 501 * * 2406 1487 0 E 45 * * 2228 2487 * 1252 * * 3851 * * 3070 * * * * * * * * 45 165 3212 * 1000 1000 * * 2406 1000 0 E 46 * * 2462 1115 * * * * 3289 * * * * 3272 * 2727 * * * * 46 158 3272 * 1000 1000 * * 2406 1000 0 D 47 * * 897 * * * * * * * * 2263 * * * 2727 3272 * * * 47 0 * * * * * * 2406 0 0 E 48 3212 * 2263 785 * * * * * * 3272 * * * * * * * * * 48 0 * * * * * * 2406 0 0 E 49 * * 478 2487 * * * * * * * * * * * * 3272 * * * 49 0 * * * * * * 2406 0 0 S 50 * * 3212 * * 2727 * * * * * * * * * 432 * * * * 50 0 * * * * * * 2406 0 0 G 51 * * * * * 0 * * * * * * * * * * * * * * 51 0 * * * * * * 2406 0 0 L 52 * * * * * * * * * 183 3070 * * * * * * * * * 52 0 * * * * * * 2406 0 0 S 53 * * 1974 * * 3070 * * 3212 * * * * * * 948 * * * * 53 0 * * * * * * 2406 0 0 L 54 * * * * * * * * * 0 * * * * * * * * * * 54 0 * * 0 * * * 2406 0 0 //