HHsearch 1.5 NAME c3jcr2_ FAM FILE c3jcr2_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3jcr2_.a3m DATE Sat Mar 12 08:38:35 2016 LENG 90 match states, 90 columns in multiple alignment FILT 105 out of 443 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.7 EVD 0.4436 0.3609 SEQ >ss_dssp CCHHHHHHHHSSCCCEEEETTSCEEEEECCCCCTTCCEEEEEEECSCSSSCCSCSSCCEEEECGGGEEEEECCTTTCCHHHHHHHHHTCC >sa_dssp ECECECBDEBDECDBCBDBEEECBBBBCBECBDEEDCBDACEBDDDDEEDCCECEEEEDCEBECECCEDCDCDEECCDEEECDDCDEEDE >ss_pred CCHHHHHHHHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEECCCCEEEEECCEEEEECCEEEEEEECCCCCCHHHHHHHHHCCC >ss_conf 934776998589889999859929999999986867669998999705984247761449992580899982730146588877642159 >Consensus mlxxxxLxxxigxxVxVeLkxgxxxxGxLxxxDxxmNixLxxxxxxxxxxxxxxxxxxxvxIRGxxIxxixlpdxxxdxxxlxxxxrxxa >c3jcr2_ MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA >UniRef50_Q4UBR6(2-88:105) U6 snrna-associated sm-like protein lsm4, putative n=1 Tax=Theileria annulata RepID=Q4UBR6_THEAN E=2e-19 s/c=1.11 id=24% cov=98% VLPLTLLRAGKSQPTLIELKNGETYSGILDSCDAFMNMHMVNVVCTSKSG-TDFWKLDECFIRGNTVKSLRLPNEVAEIAKEEKHPRK-- >UniRef50_Q6FQ95(4-96:133) Strain CBS138 chromosome I complete sequence n=1 Tax=Candida glabrata RepID=Q6FQ95_CANGA E=3e-08 s/c=0.64 id=25% cov=88% ----NFLRKLQNQYVTLELQNGSTVYGMVISVSPHSNVNLRDATldryynsdsvySEVTPQPISTSHLKNINVKECFIRQVILPDSlDLDSILV------ -- >UniRef50_C5LSK9(11-100:100) Small nuclear ribonucleoprotein, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LSK9_9ALVE E=7e-14 s/c=0.87 id=22% cov=96% -----FLREVRGCGVRVRLNDGTDYTGQLLALDGFMNLAMDDAIEFPDGVNSGSegRRYGQAVIRGNNVLYISMLERKQEEEQADDAAVEKA >UniRef50_Q4Q224(12-96:141) Small nuclear ribonucleaoprotein, putative n=3 Tax=Leishmania RepID=Q4Q224_LEIMA E=4e-06 s/c=0.62 id=26% cov=86% ----------MHSRVTIETVEGDVYKGTLAAFDiSRGNIELVEVRHQAKDSTFGF--YERVTVRGSKIRIVLLPPEMKAAPSLQW--RRES >UniRef50_A7ARZ8(11-84:87) SnRNP Sm-like protein, putative n=1 Tax=Babesia bovis RepID=A7ARZ8_BABBO E=3e-09 s/c=0.85 id=23% cov=67% --------KCLGTKVWIIMKGEKEITGVLRGFDDYMNVVLDDVTeYTFKPTGVETTELKDALVNGTNI----------------------- >UniRef50_B3L0Z6(6-88:95) U6 snrna-associated sm-like protein, putative n=5 Tax=Plasmodium RepID=B3L0Z6_PLAKH E=1e-08 s/c=0.73 id=21% cov=93% ------IESYLENEILVITNDSRIFTGKLKGFDQTTNIILGNCYERIYKESLEKISLGLYIIRGDTVTLIGEIDEDVDKNILHHKIKPE- >UniRef50_Q4V620(45-119:121) IP06106p n=8 Tax=Drosophila RepID=Q4V620_DROME E=3e-06 s/c=0.71 id=15% cov=83% ------LQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSmCAEYLVEGQEPRL--LGNVMVPGQHIVSLSIDEPDPQSSLL-------- >UniRef50_Q9AVX5(1-81:82) Small nuclear ribonucleoprotein SM D2 n=1 Tax=Guillardia theta RepID=Q9AVX5_GUITH E=0.0007 s/c=0.56 id=19% cov=81% MIPFDYISGCVrnDKSVMIILRNNKRMIGKIINYDKHLNLLLENVNEIKFVGENfselikiKSKFIPKVFLRGDNIVLILI------------------ >UniRef50_Q5DHE3(23-114:207) SJCHGC05980 protein n=2 Tax=Schistosoma japonicum RepID=Q5DHE3_SCHJA E=8e-09 s/c=0.67 id=25% cov=99% -LIAIFPAALIGEPITVTLLDETRITGRLCSCDGMMNIQLDSGVIIRNpnsDRLNEFIQVETIMIFGQRIRYVTVPKSiDIPSTLAEWECKSQ- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 113 * * * * * * 3735 * * 1 0 * * * * * * 4308 0 0 L 2 * * * * * * * 4105 2279 738 * * * 3717 * * * * * 4053 2 0 * * * * * * 5027 0 0 F 3 * * * * 2161 * * 3179 * 2263 * * 1647 * * * * * 3892 3818 3 0 * * * * * * 5170 0 0 Y 4 4271 * * * 2714 * * 4117 * 1016 * 4899 * * * * * 2853 * 3802 4 0 * * * * * * 5570 0 0 S 5 4473 5242 3374 2075 * * 3667 4714 * * * 3391 * 5411 3398 2765 3095 * * * 5 0 * * * * * * 6188 0 0 F 6 * * * 6496 1415 * * 4483 * 1891 4886 * * * * 5267 * 2375 * 4409 6 0 * * * * * * 6645 0 0 F 7 * * * * 3784 * * 2332 * 694 6492 * 5658 * * * * 4013 * 5814 7 0 * * * * * * 6850 0 0 K 8 4439 * 5189 3157 * * * * 1847 * 4627 3734 * 2503 2607 4233 6205 6207 * * 8 0 * * * * * * 6897 0 0 S 9 2560 * 5622 4575 6285 3932 6126 * 2326 5265 6322 3971 6254 4584 3839 2302 4837 6449 * * 9 0 * * * * * * 6924 0 0 L 10 4899 4505 * 5792 3709 5427 6150 4455 * 1573 4222 4815 * 5424 * 3721 6217 3767 5013 3281 10 0 * * * * * * 6940 0 0 V 11 6230 * * 5352 * * * 2107 4441 1889 4661 * 6296 3501 4559 6472 4881 2428 * * 11 16 6496 * 1000 1000 * * 7033 1000 0 G 12 6735 * 3419 3728 * 995 5280 * 6618 * * 2159 * 5559 5555 5821 * * * * 12 18 6327 * 1585 585 * * 7072 1000 0 K 13 * 6538 7145 3625 * 6922 3467 * 1754 5518 * 5033 * 3322 2782 3839 3228 * * 4978 13 0 * * * * * * 7071 0 0 D 14 * 6591 6791 3237 * 4879 6747 4285 2636 4560 7018 4280 3507 4241 2578 3862 3649 5492 * 4699 14 0 * * * * * * 7071 0 0 V 15 * * * * * * * 1989 * 3745 5192 * * * * 6744 4105 789 * * 15 0 * * * * * * 7086 0 0 V 16 * 4753 * 5757 4057 * 5826 3385 5110 3028 6682 * * 6359 3170 3441 2386 2794 5050 5123 16 0 * * * * * * 7090 0 0 V 17 * 5441 * * 5840 * * 1739 * 3584 * * * * * * * 795 * * 17 0 * * * * * * 7090 0 0 E 18 6796 * 4755 1354 6744 * 4332 4729 3135 4313 4897 5447 * 4594 4246 4795 4731 3818 * 7197 18 0 * * * * * * 7090 0 0 L 19 * 5643 * * 6459 * * 4127 * 714 3776 * * 6881 * 5441 2623 5296 * 6737 19 0 * * * * * * 7090 0 0 K 20 4685 5754 5490 * * * 6655 5886 1608 5507 * 3436 6749 4296 1886 5005 4204 4839 * * 20 45 5505 6881 0 * * * 7090 1485 0 N 21 5833 * 1507 5302 6174 3508 6192 * 6461 * * 1650 * * * 3342 4468 * 5958 * 21 0 * * * * 0 * 7085 0 1000 D 22 5967 * 2705 3659 * 958 6442 * 5323 * * 2786 * 6075 * 5101 * * * 6454 22 9 7273 * 0 * * * 7090 1000 0 L 23 5710 5662 4974 3288 6694 5840 * 3574 3339 4870 5880 6581 * 5001 2150 2933 3077 4339 * * 23 11 7064 * 0 * * * 7090 1000 0 S 24 5023 6220 5546 2400 5899 * 6963 4131 3991 3335 4408 * * 4922 5111 3135 2852 3363 * 4554 24 0 * * * * * * 7090 0 0 I 25 5603 4944 * * 3502 * * 2231 * 2427 4844 * * * * * 6467 2668 * 1964 25 0 * * * * * * 7090 0 0 C 26 6339 6814 6807 3070 5703 * 3986 3213 3820 4612 5514 5944 * 5909 2746 4269 2889 3415 * 3955 26 0 * * * * * * 7090 0 0 G 27 5204 * * * * 40 * * * * * * * * * * * * * * 27 0 * * * * * * 7090 0 0 T 28 6471 * * 5943 3950 * 5191 2896 3179 4460 5008 6989 * 4083 4155 * 1891 2688 * 6472 28 0 * * * * * * 7090 0 0 L 29 * * * * 4044 * * 3504 * 556 4552 * * * * 6562 6748 3202 * * 29 0 * * * * * * 7090 0 0 H 30 4422 5139 4776 3228 * * 6115 2661 3428 3220 5346 5645 * 4173 3702 4841 4596 2682 * * 30 0 * * * * * * 7079 0 0 S 31 2776 4012 5066 3579 6284 2602 5882 6558 6806 5133 6881 2959 * 6376 5795 2107 5175 * * 6785 31 0 * * * * * * 7090 0 0 V 32 5492 3316 * * 2171 * * 3046 * 4759 * * * * * 4405 4359 1740 * 3293 32 0 * * * * * * 7090 0 0 D 33 * * 239 3850 * 6271 * * * * * 5540 * 5901 * 5824 * 6107 * * 33 15 6575 * 0 * * * 7090 1000 0 Q 34 3519 6617 2822 3588 * 3285 5644 6827 3460 6088 6659 3191 3909 2851 4492 4280 * 5609 * * 34 0 * * * * * * 7090 0 0 Y 35 4060 * 4814 6500 2179 5114 2745 * 6827 5334 5522 3198 6581 4658 4353 5483 3821 * 6983 2941 35 0 * * * * * * 7090 0 0 L 36 4032 5247 * * 3452 4394 * 6730 6749 2985 1226 6306 6201 6977 6010 5030 4597 4811 5602 5417 36 0 * * * * * * 7090 0 0 N 37 * * 4314 * * * 6376 * * * * 176 * * * 5461 6350 5840 * * 37 0 * * * * * * 7090 0 0 I 38 * 4194 * * 5391 * * 1769 * 1735 3530 * * * * * 5132 2233 * * 38 0 * * * * * * 7090 0 0 K 39 5136 5984 * 4738 4906 * 3655 2961 4382 3451 5768 5154 * 4616 5783 4187 3022 2027 6785 * 39 0 * * * * * * 7090 0 0 L 40 * * * * * * * 3258 * 388 3084 * * * * * * 6221 * * 40 31 * 5577 * * * * 7090 0 0 T 41 4662 5708 3219 2908 * 6678 6549 4692 2993 6073 * 6005 * 4199 3703 2309 3329 4533 * 6661 41 41 5168 * 441 1925 977 1023 7077 2321 1617 D 42 6444 5620 1534 4012 * 4482 5731 * 3913 * * 1703 * 4205 * 4362 * * * 5579 42 36 6113 6638 0 * 0 * 7088 1454 1000 I 43 1554 2747 * * * 6286 * 4614 * * * * 5324 * * 4627 3784 1649 * * 43 61 5169 6195 1281 765 0 * 7063 2172 1000 S 44 6324 6097 * 3130 6778 * * 3140 2881 6324 7032 6646 * 6449 6533 3063 2351 2346 * 4811 44 108 3967 6880 2658 249 * 0 7041 3394 1000 V 45 5488 5871 4956 1866 4855 5571 5636 3807 4764 4064 6757 5557 * 4638 3581 5754 4892 2910 * 3821 45 27 5765 * 2470 287 * 0 7038 1608 1601 T 46 6613 5865 4825 3936 4208 * 5430 2939 3252 3656 6745 * * 4389 4507 4825 2273 3470 6818 4729 46 125 4945 4304 2888 209 947 1055 7038 2206 1601 D 47 5070 * 2633 * 4886 3355 6570 3035 3245 * * 5470 4058 4522 4096 3136 5322 3647 6081 5542 47 51 5694 6007 1160 856 1602 576 7002 1613 3284 P 48 4511 6211 3708 4356 4740 4692 5417 4741 2943 * 4385 3655 2985 5342 3901 4061 3964 4864 * 4412 48 55 5191 6633 1143 870 582 1590 7013 1827 3231 E 49 5079 * 2117 2454 * 3012 5092 5680 4318 4865 * 2981 4801 5671 5616 4320 6589 4752 * * 49 103 5250 4543 0 * 1515 621 7032 1738 2217 K 50 5210 * 4007 3629 * 1612 * 5661 2825 6843 * 3864 * 3672 3650 4409 4372 6482 * * 50 163 5150 3671 1565 595 2514 278 7016 2364 3284 Y 51 6256 6853 4155 2626 5132 * * 5221 3513 3573 * 3614 4807 3866 5298 4411 2661 4534 * 3766 51 93 6538 4278 3000 193 1490 635 6997 1000 4164 P 52 6198 6955 5650 3178 4975 3654 * 5739 2636 6580 * 3073 3355 4578 5119 3585 3492 3859 * 5769 52 105 6462 4084 2807 222 519 1727 7019 1000 4194 H 53 4686 6006 5057 3465 4495 3404 3995 5165 2231 5399 6683 * 6427 3937 3290 3768 4842 5521 6174 5257 53 44 6431 5749 0 * 1115 893 7019 1000 3829 M 54 5323 * 4183 3746 3201 5189 5379 3957 3616 4449 4923 6251 4636 3903 4421 4040 3086 3413 * 5558 54 109 6443 4027 1000 1000 1222 808 7011 1000 3434 L 55 4270 4572 5540 4323 4539 5512 * 3406 4247 3689 4308 6333 4810 * 3532 3103 3391 3253 5706 5356 55 103 6302 4156 2322 322 3037 187 6981 1000 3921 S 56 5957 * 5686 3988 6493 4209 3372 * 2380 5881 * 3842 3873 3580 4620 2498 4219 6066 * 5458 56 131 5012 4165 1612 572 543 1673 6957 2269 4723 V 57 4756 4792 * 5161 4584 5150 6326 3256 4969 1601 3787 * * 5627 5196 4264 * 3368 * 3619 57 55 6631 5199 1000 1000 1325 735 6960 1000 3829 K 58 6568 * 2853 3024 * 1588 6014 * 3797 * 6766 5086 3180 4700 4518 4008 6060 * * * 58 12 6882 * 0 * 1250 787 7014 1000 3518 N 59 4654 * 3932 2795 5266 * 5645 6475 4219 3037 4771 3436 6288 4436 3450 3035 3394 6653 * 6481 59 24 5926 * 0 * 0 * 7048 1000 2799 C 60 5176 3658 * 6658 3977 * * 2307 * 2690 3835 * * * * * 5185 1798 * 3689 60 34 5413 * 2212 351 * * 7049 1699 0 F 61 6365 * * * 1352 * 6266 4446 * 3016 3630 5123 * * * 5002 5163 2916 * 3151 61 19 6274 * 0 * * * 7049 1000 0 I 62 6152 6427 * * * * * 1121 * 2405 * * * * * * * 1618 * * 62 0 * * * * * * 7049 0 0 R 63 6365 * * * 6327 * * 6459 3274 * 6086 4694 6446 4228 498 6404 * 6670 * 6315 63 0 * * * * * * 7049 0 0 G 64 4325 4422 * 5804 6194 308 * * * * * 5979 6315 * * 4814 * * * * 64 0 * * * * * * 7049 0 0 S 65 4787 5801 2855 3316 * 4929 * 5645 4020 * * 2395 * 4804 3442 2151 4331 * * * 65 0 * * * * * * 7044 0 0 V 66 4558 6917 6733 6603 5073 5522 4752 5977 5076 4486 5359 1750 * 3489 5317 2383 3485 6659 * 5378 66 0 * * * * * * 7044 0 0 V 67 * * * * * 6435 * 782 * 5349 * * * * * * 6259 1437 * * 67 26 5801 * 1000 1000 * * 7044 1000 0 R 68 6253 5688 6094 5399 * * 6720 4450 2828 2777 * * * 5613 1617 4920 4364 2652 * * 68 0 * * * * * * 6939 0 0 Y 69 * 6422 6637 * 2195 * 4469 4358 * 3338 5218 5597 * 4976 * 2917 4672 6392 5796 1805 69 16 6465 * 1585 585 * * 6939 1000 0 V 70 6460 * * * 3706 * * 1328 * 3602 4796 * * * * 6119 * 1393 * * 70 61 5175 6188 476 1831 * * 6939 1714 0 Q 71 5092 * 4558 3593 * 3303 2517 3811 5907 3545 5854 * * 3329 4364 3202 4563 5166 * 4278 71 45 5844 6257 1000 1000 * 0 6815 1000 1000 L 72 * * * 4111 3474 * * 2125 * 1087 5068 5825 * * * * 4912 3807 * * 72 23 * 5967 * * 908 1098 6773 0 1649 P 73 5581 * 4158 4341 * * * 4763 5960 5019 * 4203 798 5724 6125 4147 5803 4238 * * 73 0 * * * * 924 1080 6634 0 1581 A 74 4315 * 1225 3145 * * * * 3440 * * 3826 3296 5208 * 3688 5572 5741 * * 74 64 * 4518 * * * 0 6488 0 1000 D 75 5517 * 2197 2278 * * * 4373 * * 4542 4146 3708 5439 3613 2826 * 3574 * * 75 241 3190 4498 0 * 0 * 6401 2461 2166 E 76 4356 * 2255 3223 * 4463 * 5149 3427 3038 5175 4442 5302 5327 * 5493 3190 3855 * 5540 76 31 5568 * 0 * 0 * 6453 1000 1521 V 77 5774 * 5553 5191 5615 5508 * 2104 3114 2331 * * 4277 5364 * * 5232 2051 * * 77 0 * * * * * * 6464 0 0 D 78 5209 * 1103 1965 * * * 5134 4514 * * 3691 4247 5181 * * 5535 * * * 78 0 * * * * * * 6513 0 0 T 79 2997 * * 2017 5379 * * 4580 4198 3093 * * 3753 * 4121 2662 4511 4144 * * 79 70 4409 * 516 1735 * * 6423 1673 0 Q 80 3714 * 5125 3317 5284 4205 5207 4827 5244 3003 5513 3566 3171 4311 4359 2914 5106 5415 * * 80 0 * * * * * * 6359 0 0 L 81 5047 * * 3022 * 5125 * 4106 3334 1350 4218 * 5597 4157 * 4153 * 3613 * * 81 0 * * * * * * 6359 0 0 L 82 3439 * * 3900 * * * * * 888 4908 * 4937 * * * 4981 2300 * * 82 0 * * * * * * 6082 0 0 Q 83 * * 3084 1858 * * 3115 3741 2421 * * * * 2343 * * * 4955 * * 83 0 * * * * * * 5774 0 0 D 84 * * 1781 2383 * * 4353 * 4732 * 4763 * * 3586 4419 3587 4354 4575 3476 * 84 69 * 4414 * * * * 5667 0 0 A 85 2882 * * 2497 * 4570 3438 * 4133 4263 4333 * * 4455 3646 4415 3636 2822 * * 85 0 * * * * * 0 5434 0 1000 A 86 3539 3487 * * * * * 2639 3393 * * 4570 2462 4392 3145 * 2436 * * * 86 0 * * * * 0 * 5434 0 1000 R 87 * * 4252 * 4222 * * * 2354 * * 4420 4651 * 946 * * 3427 * * 87 0 * * * * * * 5491 0 0 K 88 * * * 3200 * 4258 * * 1785 4348 * 4639 3996 3593 2215 3341 * * * * 88 0 * * * * * * 5417 0 0 E 89 * * * 1014 * * * * 2992 * * * * 1623 4202 * * * * * 89 0 * * * * * * 5041 0 0 A 90 233 * * * * * * * * * * * * * * 2746 * * * * 90 0 * * 0 * * * 3455 0 0 //