HHsearch 1.5 NAME c3j7aO_ FAM FILE c3j7aO_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j7aO_.a3m DATE Sat Jul 19 11:44:56 2014 LENG 79 match states, 79 columns in multiple alignment FILT 46 out of 50 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.7 EVD 0.4475 1.8445 SEQ >ss_dssp CCCCCHHHHHHHHHHHHHHSEECCCCCSSCCCCSSSCCCHHHHHHHHHHHHHHTSEEECCCSSCCCEEECHHHHHHHHC >sa_dssp EEEDDEECDEEBBEBADEDCDADACDCEEDEDBEECEACADBACDBAEDACEDECBDDDDDEDCCDBCBDEDACEDBEE >ss_pred CCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECHHHHHHHCC >ss_conf 9536278889999999423769996078888774378843899999974211545542010144678982889996509 >Consensus xxxipkxxrxxIyxxLfxeGVlvxkKdxxxxxhxexxvpNLxVxkxmxSLxSrgxVxexfxWxhxYxxLtxeGieyLRx >c3j7aO_ YSYIPKQNKKLIYEYLFKEGVIVVEKDAKIPRHPHLNVPNLHIMMTLKSLKSRNYVEEKYNWKHQYFILNNEGIEYLRE >UniRef50_D0A2S5(50-132:219) 40S ribosomal protein S10, putative n=4 Tax=Trypanosoma brucei RepID=D0A2S5_TRYBG E=1e-11 s/c=0.85 id=38% cov=100% -TYVPKSSRDDVYRFFFTEGVVSCKKDPLGTWKGTLGgktfkLPTLQVMQLMRSLKSRGLIKEQFAWRHFYWTLNDEGINYMRK >UniRef50_C4Y8M7(23-101:146) Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y8M7_CLAL4 E=9e-11 s/c=0.86 id=34% cov=100% YTRVPKREPESSHMHQAREGVVVAKKDFDQPKHEEIDTRNLYVIKALQSLTSKGFVKTQFSWQYYYYTLTDEGVEYLR- >UniRef50_D2VEA5(2-79:155) 40S ribosomal protein S10 n=1 Tax=Naegleria gruberi RepID=D2VEA5_NAEGR E=3e-24 s/c=1.44 id=38% cov=99% --FIPSESRVAVMQYLFKEGVVVAKNDLRLKSHPHIeGVKNLHVVKFMQGFAARGLVKQQYAWRHYYWFLTNNGVNFLRE >UniRef50_A2G675(2-76:141) Plectin/S10 domain containing protein n=4 Tax=Trichomonas vaginalis RepID=A2G675_TRIVA E=9e-20 s/c=1.31 id=32% cov=96% --YMPTAIRRRILRYLFENGVLCV-SDIQSGTHEELDCLNIYPYQIGRAFVTKGFCIKTYAWSHAYYTLTDKGIEYLR- >UniRef50_C6LNQ2(4-88:136) Ribosomal protein S10B n=2 Tax=Giardia intestinalis RepID=C6LNQ2_GIALA E=4e-09 s/c=0.74 id=26% cov=96% ---IPKAVYKAVYAHLYENASLALKEYWRVGNVPgityidENGKPCnptyIHVNCIMQSLESRGVVKDTFAWRHHYYLLTEKGEQFIR- >UniRef50_Q8SS17(25-77:96) 40S RIBOSOMAL PROTEIN S10 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SS17_ENCCU E=8e-06 s/c=0.97 id=37% cov=68% --------------------------DTVLGNHRDLEIPNLHLKIFMKTMISYGYVQRIHVWRHSYFLLTPLGESRLRE >UniRef50_Q4RUK8(6-41:1375) Chromosome 8 SCAF14994, whole genome shotgun sequence n=2 Tax=Tetraodon nigroviridis RepID=Q4RUK8_TETNG E=5e-05 s/c=1.35 id=36% cov=46% --LMPLRDLRAIYEVLFRDGVMVAKKDKRPqTKHPEIE------------------------------------------ >UniRef50_Q3LVY9(2-77:84) Ribosomal protein S10 n=1 Tax=Bigelowiella natans RepID=Q3LVY9_BIGNA E=0.0003 s/c=0.61 id=25% cov=97% --LVSKFKLIKIYEKILNDGIIIIPKNFNRTYQFCNSFYAFHLKKVLISLHSRKFMNEILLGSNYYWTLTKKGERFLR- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Y 1 * * * * 2115 * * * * * * * * * * * * * * 379 1 0 * * * * * * 1856 0 0 S 2 * * * * * * * * * * * * * * * 990 1010 * * * 2 0 * * * * * * 2328 0 0 Y 3 * * * * 2661 * * 2532 * 1135 * * * * 4754 * * * * 2501 3 0 * * * * * * 3446 0 0 I 4 * * * * * * * 981 * 5151 2151 * * * * * * 2060 * * 4 0 * * * * * * 3625 0 0 P 5 4780 * * 4566 * * * * 3542 * * * 684 * 5200 2427 * * * * 5 0 * * * * * * 3625 0 0 K 6 * * * 4947 * * * * 551 3673 * * * * 3692 5054 3337 * * * 6 0 * * * * * * 3681 0 0 Q 7 1764 * 3652 2883 3977 * * * 2991 * * * 6081 3900 3767 3391 5939 4861 * * 7 0 * * * * * * 3681 0 0 N 8 * * 2408 5129 * * 5780 4502 3977 * * 1749 * 4256 * 2995 3510 4206 * 4646 8 0 * * * * * * 3681 0 0 K 9 * * * * * * * 4870 3270 2690 * * 5129 5228 798 5466 * * * 4206 9 0 * * * * * * 3681 0 0 K 10 * * 3363 5129 * * * 2228 2501 5599 * 3465 * * 1544 * * 5054 * * 10 0 * * * * * * 3681 0 0 L 11 1186 * 5319 3987 * * * 6081 2610 5496 5349 4392 * * 3243 4172 5265 6356 * * 11 0 * * * * * * 3681 0 0 I 12 * * * * * * 5466 477 * * * * * * * 5129 * 2119 * * 12 0 * * * * * * 3681 0 0 Y 13 * 6009 * * 5239 * 3540 * * 3516 5089 * * * * 4979 * * * 467 13 0 * * * * * * 3722 0 0 E 14 4248 * * 1228 * * * * 2912 * 5146 * * 3456 2480 5296 3975 * * * 14 0 * * * * * * 3722 0 0 Y 15 4042 * * 4783 3642 * 2846 * 3514 6555 * 5289 * 3280 * * * 3016 * 1585 15 0 * * * * * * 3716 0 0 L 16 * * * * 3642 * * 3730 * 439 * * 5479 5214 * * * 4126 * * 16 0 * * * * * * 3716 0 0 F 17 5214 * * * 565 * * 4346 * 2703 * * * * * * * * * 3404 17 0 * * * * * * 3716 0 0 K 18 * * * 3396 * * 4451 * 1615 4976 * 3095 * 2709 2869 6141 3642 * * * 18 20 6156 * 1585 585 * * 3716 1000 0 E 19 * * 1883 862 * 5479 * * * * * 3396 * 6007 * 4451 * * * * 19 0 * * * * * * 3716 0 0 G 20 4271 * * * * 77 * * * * * * * * * * * * * * 20 0 * * * * * * 3716 0 0 V 21 5306 4924 * * * * * 4029 * 4970 * * * * * 4271 * 328 * * 21 0 * * * * * * 3716 0 0 I 22 * 6016 * * 4712 * * 1779 * 1525 2472 * * * * * * 3456 * 4783 22 0 * * * * * * 3716 0 0 V 23 3369 4534 * * 4022 * * 3107 * * * * * * * 5414 5249 767 6141 5026 23 0 * * * * * * 3716 0 0 V 24 1085 3009 * * * * * 3426 * 3475 * * * * * * * 2175 * * 24 120 * 3653 * * * * 3716 0 0 E 25 5944 * * 3335 * * 3969 * 675 * * * 3457 4530 4058 * * * * * 25 0 * * * * 0 * 3580 0 1571 K 26 * * * 4271 * * * * 412 * * 3214 * * 4451 4534 * * * * 26 0 * * * * * * 3716 0 0 D 27 * * 493 4970 * * * * 5466 * * 3302 * * 5830 3948 * * * 4292 27 67 5391 5552 2322 322 * * 3793 1000 0 A 28 5642 * * 3941 1778 5766 5023 4579 4306 4462 5015 * 3045 5892 4615 5465 3592 6559 4281 4085 28 45 * 5038 * * * 0 3784 0 1000 K 29 4985 * 5187 4211 * 5290 4982 * 3359 5352 5535 2120 * 3750 1834 * 5407 4197 * 5421 29 84 * 4152 * * 962 1040 3760 0 1510 I 30 3838 * 5295 * 3497 4424 * 3978 * 1973 4522 * 3084 4654 4030 4060 5318 3268 * * 30 199 4073 3853 0 * 0 * 3726 1325 1786 P 31 3956 4178 5760 5742 4781 2540 * * 4257 5345 * * 1589 5855 * 3921 2812 * * * 31 35 5401 * 0 * 925 1079 3741 1000 1543 R 32 * * * * * 5358 3697 * 1933 2815 4255 3165 5774 4212 3662 5151 4518 * 4472 4000 32 22 * 6076 * * * 0 3747 0 1000 H 33 * * * 4817 * 5351 432 * 5369 * 5504 * * 3993 * 5906 5560 4267 * * 33 0 * * * * * 0 3750 0 1515 P 34 4034 5009 * 2727 3993 4029 * 5683 4817 * 5504 * 1297 * 3703 4320 5512 * * * 34 77 4267 * 2585 263 0 * 3750 1000 1515 H 35 * 4089 3338 1016 * * 3273 * * 6019 * 4885 * 3743 * * 3468 5049 * * 35 20 6168 * 3000 193 * * 3793 1000 0 L 36 5971 * * * 4210 * * 2101 4233 1791 5466 3187 * * * * 3265 3566 * 4885 36 235 2733 * 263 2588 * * 3793 2206 0 N 37 5908 * 2185 2500 * 1668 * * * * * 3200 5782 4970 * 4089 4203 * * * 37 191 3015 * 1582 587 * * 3793 2432 0 V 38 * 3721 * * 4086 * * 2256 4291 3920 * * * * * * 3957 1076 * * 38 0 * * * * * * 3795 0 0 P 39 5461 * * 3918 * * * * 3099 4582 * * 888 6160 3954 5657 4179 * * 4086 39 55 4731 * 1585 585 * * 3795 1386 0 N 40 4091 3394 * * * * * * 4876 * * 402 * * * 4965 5438 * * * 40 76 4293 * 2000 415 * * 3795 1000 0 L 41 * * * * 3431 * * 2424 * 519 * * * * * * * * 5443 * 41 0 * * * * * * 3795 0 0 H 42 * * 5664 4501 * * 1401 3920 * * * * * 1521 * * * * * 2805 42 0 * * * * * * 3795 0 0 I 43 4876 4729 * * * * * 5679 * 3408 * * 4585 * * * * 372 * * 43 0 * * * * * * 3795 0 0 M 44 * * * * 5051 * * 1629 3408 4217 2244 4293 * * * * 3595 4515 5028 3655 44 0 * * * * * * 3795 0 0 M 45 * 4293 * * * * * 3771 1025 5357 2628 * * 2959 4678 * * 5036 * * 45 0 * * * * * * 3795 0 0 T 46 2156 * * * 3995 * * 2564 * 1965 5443 * * * * * 2662 3230 * * 46 0 * * * * * * 3795 0 0 L 47 * 4524 * * * 4585 * * * 1715 831 * * * * * 6579 4729 * * 47 0 * * * * * * 3795 0 0 K 48 5752 * * * * 4316 * 4091 1798 * * * * 1633 1930 * * * * * 48 0 * * * * * * 3795 0 0 S 49 4585 * * * * 3452 * * * * * * * * * 266 4815 * * * 49 0 * * * * * * 3795 0 0 L 50 * * * * 2766 * * * * 324 4204 * * * * * * * * * 50 0 * * * * * * 3795 0 0 K 51 4124 5739 5218 4024 * * 3733 3921 1461 4097 * * * 5785 4345 5467 3451 3454 * * 51 0 * * * * * * 3795 0 0 S 52 4427 * 3842 * * * * * * * * * * * * 338 3429 * * * 52 0 * * * * * * 3779 0 0 R 53 * * * * * * * * 1521 * * * * * 806 4522 * * * 4802 53 0 * * * * * * 3779 0 0 N 54 5680 * 5440 3832 * 720 * * 2632 * * 3779 * * * 4449 * * * * 54 0 * * * * * * 3779 0 0 Y 55 * 5019 * * 1568 * * * * 2225 * * * * * * * 3686 * 1555 55 0 * * * * * * 3783 0 0 V 56 5012 4526 * * * * * 3839 * 3838 4055 * * * * * * 463 * * 56 0 * * * * * * 3783 0 0 E 57 * * 4196 3667 * * * 4526 1306 * * 3190 * 4799 2979 * 3014 5471 * * 57 0 * * * * * * 3783 0 0 E 58 * * 4248 548 * * * * 4526 4993 * * * 5167 4799 * 3004 * * * 58 0 * * * * * * 3783 0 0 K 59 * * * * * * 5471 2437 2852 * * * * 1832 4479 4941 1918 4993 * * 59 0 * * * * * * 3783 0 0 Y 60 * 5019 * * 699 * 4799 * * 4055 * * * * * * 4489 * * 2235 60 0 * * * * * * 3783 0 0 N 61 1536 4941 * * * * * * * 4055 * 2237 * * * 2137 5320 3351 * * 61 0 * * * * * * 3783 0 0 W 62 * * * * * 4055 * * * * * * * * * * * * 89 * 62 0 * * * * * * 3783 0 0 K 63 * 5718 * * * 4174 * * 3510 * 4295 5012 * 1914 1370 3271 * * * * 63 0 * * * * * * 3783 0 0 H 64 * 5019 * * 4676 * 962 * * * * 4055 * * * * 4196 * 3559 2203 64 0 * * * * * * 3783 0 0 Q 65 4526 5008 * * 3639 * 2513 * * 4228 * 4488 * 5638 * 4799 4676 * * 1068 65 0 * * * * * * 3783 0 0 Y 66 * * * * * * 5012 * * * * * * * * * * * * 45 66 0 * * * * * * 3783 0 0 F 67 * * * * 2773 * * * * * * * * * * * * * 1074 1401 67 0 * * * * * * 3783 0 0 I 68 * 4489 * * 3006 * * 4248 * 3138 * * * * * * 1484 3264 * 2299 68 0 * * * * * * 3783 0 0 L 69 * * * * * * * * * 0 * * * * * * * * * * 69 0 * * * * * * 3783 0 0 N 70 * * * * * * * * 4335 * * 1760 * * * * 610 * * * 70 0 * * * * * * 3783 0 0 N 71 4993 * 1781 3547 * * * * 3333 * * 1594 3280 4831 * * 5408 * * * 71 0 * * * * * * 3783 0 0 E 72 * * 3702 626 * * * * 2679 4799 * 5167 * 5471 4941 * * * * * 72 0 * * * * * * 3783 0 0 G 73 * * * * * 0 * * * * * * * * * * * * * * 73 0 * * * * * * 3783 0 0 I 74 * 4676 * 2749 * * * 920 * 3709 * * * * * * * 2272 * * 74 0 * * * * * * 3783 0 0 E 75 2896 * 3733 1091 * * * 5012 4260 * * 3732 * 4248 4055 4799 * 6186 * * 75 0 * * * * * * 3783 0 0 Y 76 * * * 5876 1824 * 4609 * * * * * * * 4799 * * * * 681 76 0 * * * * * * 3783 0 0 L 77 * * * * * * * 4248 * 302 3839 * * * * * * 3910 * * 77 0 * * * * * * 3783 0 0 R 78 * * * * * * * * 4676 * * * * * 58 * * * * * 78 0 * * * * * * 3783 0 0 E 79 * * 2828 990 * * * * 2926 * * * * 2158 * * * * * * 79 0 * * 0 * * * 3017 0 0 //