HHsearch 1.5 NAME c3j7a5_ FAM FILE c3j7a5_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j7a5_.a3m DATE Sat Jul 19 11:48:52 2014 LENG 58 match states, 58 columns in multiple alignment FILT 21 out of 25 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.6 EVD 0.4553 1.6195 SEQ >ss_dssp CCCEEEEEEEEEECCSSSSCCEEEEEECCCCEEEEECSCCCTTCEEEESSCSCCCCCC >sa_dssp EEEEEAEBCEDDCECEEECECABACADDEEDBBCDCEDECEEEDDBEBEECECECEEE >ss_pred CCHHHHHHHHHHHCCCCCCEEEEEEEEECCHHHHHCCCCEEECCEEEEEECCHHHHCC >ss_conf 9136888999983136757079999975105751224971226487771035362079 >Consensus xxxxxaxVixVlgrtGxxGxxtQVrvxxxrxixRNVkGPVrxGDIlxLxeterEarrl >c3j7a5_ EKSKLAKVEKVLGRTGSRGGVIQVRAQFGRFLIRNVKGPVREGDILALLETEREARRL >UniRef50_Q4CXV7(52-118:119) 40S ribosomal protein S33, putative n=6 Tax=Trypanosoma RepID=Q4CXV7_TRYCR E=5e-11 s/c=1.03 id=59% cov=102% DQAQVGLIIKVLGRTGSRGNVTQVRVRLmaeegspdaNRTIVRNVKGPCKEGDMLSLMETEREARRL >UniRef50_Q8U159(9-67:71) 30S ribosomal protein S28e n=5 Tax=cellular organisms RepID=RS28_PYRFU E=1e-06 s/c=0.92 id=57% cov=93% -----AEVIEIIGRTGTTGDVTQVKVRIlegrdkGRVIRRNVRGPVRIGDILILRETEREAREI >UniRef50_Q8TQL8(15-73:76) 30S ribosomal protein S28e n=17 Tax=Archaea RepID=RS28_METAC E=2e-05 s/c=0.85 id=52% cov=93% -----AEVIDVIGNTGMHGEASQIQCRVlegrdkGRVITRNCVGPVRIGDILMLLETSREAKKL >UniRef50_Q234G5(4-67:68) Ribosomal protein S28e containing protein n=2 Tax=Eukaryota RepID=Q234G5_TETTH E=3e-08 s/c=0.94 id=61% cov=102% EETTKARIMDVLGKTGSRGGITQVRVvlisgkEEGRQLIRNVKGACRVGDVLELMECEREARRL >UniRef50_UPI0000E1F04D(227-285:286) PREDICTED: similar to 40S ribosomal protein S28 n=2 Tax=Pan troglodytes RepID=UPI0000E1F04D E=7e-13 s/c=1.27 id=55% cov=97% ---KLVRVTKLLGRTGSKGQWSQVCMEFMEdascSIIHNVKGPVYEGDVLTLLQSEPEVGRL >UniRef50_Q8SQM2(4-63:65) 40S RIBOSOMAL PROTEIN S28 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SQM2_ENCCU E=3e-08 s/c=1.00 id=50% cov=93% ----FGEVTHVLGRTGGSGLLTQVKMELmhnKRTIQRAVKGPVAVGDIIEILECEREHRR- >UniRef50_A8DYY3(6-59:76) CG34182 n=11 Tax=Sophophora RepID=A8DYY3_DROME E=4e-08 s/c=1.10 id=48% cov=83% -----ARVIKILNRIGARGILTEVRVQLvdqpKMQFMRTVKGPVRLGDIVDFEDTE------ >UniRef50_C7DI36(27-88:91) Ribosomal protein S28e n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI36_9EURY E=3e-07 s/c=0.91 id=42% cov=95% ----LAEIVEVnrVSKTGMYGEVYSVTCRIlegkdkGRIIRRNSIGPIKIGDIIRLPDTSREAREI >UniRef50_Q3LVV1(8-64:65) Ribosomal protein S28 n=1 Tax=Bigelowiella natans RepID=Q3LVV1_BIGNA E=6e-07 s/c=0.97 id=52% cov=93% --SEFVIVTKILKKVGKRGQGTQVRVKsitnIKKTLIRNIKGPVRIGDIVLLKESEREA--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * 1566 594 * * * * * * * * * * * * * * * * 1 0 * * * * * * 1501 0 0 K 2 * * * 1585 * * * * 1604 * * * * 1566 * * * * * * 2 0 * * * * * * 1501 0 0 S 3 2018 * * * * * * * * * * * * * * 973 2037 * * * 3 0 * * * * * * 1769 0 0 K 4 * * * 2533 * * * * 875 * * * * 2803 * * 2852 * * * 4 0 * * * * * * 1903 0 0 L 5 * * * * 1792 * * * 3431 906 * * * * * * * 3561 * * 5 0 * * * * * * 2268 0 0 A 6 570 * * * * 3203 * * * * * * * * * 4140 * 2634 * * 6 0 * * * * * * 2678 0 0 K 7 * * * 1226 * * * 4100 2845 4301 * * * * 1625 * * * * * 7 0 * * * * * * 2678 0 0 V 8 * * * * * * * 2392 * * * * * * * * * 305 * * 8 0 * * * * * * 2678 0 0 E 9 * * * 4592 * * * 1155 * * 3531 * * * * * 1844 2792 * * 9 0 * * * * * * 2678 0 0 K 10 * * 3040 2105 * * 4111 * 1142 * * * * 3796 3987 * * * * * 10 0 * * * * * * 2678 0 0 V 11 * * * * * * * 1727 * 3810 * * * * * * * 674 * * 11 126 3584 * 1000 1000 * * 2678 1000 0 L 12 * * * * * * * 2827 * 590 * * * * * * * 2361 * * 12 0 * * * * * * 2678 0 0 G 13 * * 4876 * * 421 * * 4100 * * 3693 * * * 3584 * * * * 13 0 * * * * * * 2678 0 0 R 14 * * * 4197 * * * * 2336 * * 3939 * * 552 * * * * * 14 0 * * * * * * 2678 0 0 T 15 * * * * * * 4140 3693 * * * * * * * * 421 3067 * * 15 0 * * * * * * 2678 0 0 G 16 * * * * * 0 * * * * * * * * * * * * * * 16 0 * * * * * * 2678 0 0 S 17 2854 * * * * 4111 * * 4100 * 2300 * * * * 1412 4725 2958 * * 17 0 * * * * * * 2678 0 0 R 18 4140 * * * * * 2665 * 3810 * * * * 4101 1175 4111 3799 * * 3584 18 0 * * * * * * 2678 0 0 G 19 * * * * * 0 * * * * * * * * * * * * * * 19 0 * * * * * * 2678 0 0 G 20 * * 4725 1592 * 2354 * 3693 * 3072 * 4301 * 2412 * * * * * * 20 0 * * * * * * 2678 0 0 V 21 3062 4101 * * 4034 4100 * 4148 * 2887 * * * * * * * 1185 3810 * 21 0 * * * * * * 2678 0 0 I 22 * * * * * * * 3654 * * 4197 * * * * 2873 630 * * 3584 22 0 * * * * * * 2678 0 0 Q 23 * * * 2854 * * * * * * * * * 362 * 3584 * * * * 23 0 * * * * * * 2678 0 0 V 24 * * * * * * * 3939 * * * * * * * * * 97 * * 24 0 * * * * * * 2678 0 0 R 25 * 3810 * * * * * * 2471 * * * * 3939 737 * 3584 * * * 25 0 * * * * * * 2678 0 0 A 26 4592 1945 * * * * * * * * 2953 * * * * * * 812 * * 26 84 4148 * 2585 263 * * 2678 1000 0 Q 27 * * * 1313 * * * * 3120 * * * * 3074 1459 * * * * * 27 87 4100 * 2000 415 * * 2678 1000 0 F 28 * * * 4148 1896 * * 2095 * 2018 * * * * * * * 2367 * * 28 2136 372 * 2404 302 * * 2678 2521 0 G 29 * * 4140 * * 1284 * * 2370 * 3810 3628 * * 4034 2990 * * * * 29 0 * * * * * * 2678 0 0 R 30 * * * 3829 * * * * 3150 * 2872 * * * 556 * * * * * 30 105 3829 * 2000 415 * * 2690 1000 0 F 31 * * * * 4625 * * 2159 * * * * * 2188 * 2652 2185 2867 * * 31 0 * * * * * * 2690 0 0 L 32 * * * * 3708 * * 697 * 1705 * * * * * * * * * * 32 0 * * * * * * 2690 0 0 I 33 4231 * * * * * * 1452 * 4056 3708 * * 4171 2521 * 2905 3618 * * 33 0 * * * * * * 2690 0 0 R 34 * * * * * * 3829 * 4056 * * * * * 202 * * * * * 34 0 * * * * * * 2690 0 0 N 35 3112 * * * * * * * * * * 308 * * * * 3708 * * * 35 0 * * * * * * 2690 0 0 V 36 * 3971 * * * * * 4128 * * * * * * * 3607 * 328 * * 36 0 * * * * * * 2690 0 0 K 37 * * * * * * * 3607 630 3476 5280 * * * 3440 * * 3971 * * 37 0 * * * * * * 2690 0 0 G 38 * * * * * 0 * * * * * * * * * * * * * * 38 0 * * * * * * 2690 0 0 P 39 4226 * * * * * * * * * * * 79 * * * * * * * 39 0 * * * * * * 2690 0 0 V 40 * 3302 * * * * * 3607 * * * * * * * * * 292 * * 40 0 * * * * * * 2690 0 0 R 41 4171 * * * * * * * 2637 * * * * * 604 * * 4173 * 3829 41 0 * * * * * * 2690 0 0 E 42 * * * 1838 * * * 1760 5280 2529 * * * * * * * 2145 * * 42 0 * * * * * * 2690 0 0 G 43 * * 4022 * * 144 * * * * * 4899 * * * * * * * * 43 0 * * * * * * 2690 0 0 D 44 * * 0 * * * * * * * * * * * * * * * * * 44 0 * * * * * * 2690 0 0 I 45 * * * * * * * 585 * * 4383 * * * * * 5280 1945 * * 45 0 * * * * * * 2690 0 0 L 46 * * * * * * * 1994 * 789 * * * * * * * 2554 * * 46 0 * * * * * * 2690 0 0 A 47 4625 4022 2872 2892 * * * 3232 * 4128 3068 * * 4231 3607 4383 2978 4899 * * 47 0 * * * * * * 2690 0 0 L 48 * * * * 3708 * * 3112 * 308 * * * * * * * * * * 48 0 * * * * * * 2690 0 0 L 49 * * * 3708 * * * * 2533 1522 2638 * 3607 * 2647 * * * * * 49 0 * * * * * * 2690 0 0 E 50 * * 2193 492 * * * * * * * * * 3829 * * * * * * 50 0 * * * * * * 2690 0 0 T 51 * 2737 * * * * * * * * * * * * * 1688 890 * * * 51 0 * * * * * * 2568 0 0 E 52 4230 * * 320 * * * * * * * * * * * 2782 * * * * 52 0 * * * * * * 2568 0 0 R 53 * * * * * * * * * * 3853 * 3481 * 249 * * * * * 53 0 * * * * * * 2454 0 0 E 54 * * * 65 * * * * * * * * * * * * 4505 * * * 54 0 * * * * * * 2454 0 0 A 55 274 * * * * * 3582 * * * * * * * * * * 3481 * * 55 0 * * * * * * 2454 0 0 R 56 * * * * * 3110 * * 3345 * * * * * 348 * * * * * 56 0 * * * * * * 2285 0 0 R 57 * * * 2367 * * * * 2592 * * * * * 643 * * * * * 57 0 * * * * * * 2285 0 0 L 58 * * * * * * * 1804 * 487 * * * * * * * * * * 58 0 * * 0 * * * 2197 0 0 //