HHsearch 1.5 NAME c3j6vV_ FAM FILE c3j6vV_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j6vV_.a3m DATE Sat Jun 21 08:22:18 2014 LENG 124 match states, 124 columns in multiple alignment FILT 15 out of 19 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.0 EVD 0.4016 -0.5717 SEQ >ss_dssp CCSSCCCCCSSSSSSCSSCCSSSSSSCCCCSSSSCTTCSSCCCTTHHHHHHHHHHHSSSCCCSCCEEEECSSSEEEECCCSSSCTTCSCSHHHHHHHHHH HHHSCSCCEECCCSCCSCCCCCCC >sa_dssp ECEEEDDBBDDBDEDDDCCBEDCDEBDDDDBEEBEEEDEEECEECCEDCEECCEECCEECEBACCBECCCCDCCBBACABADEECDCEEEECADEACECB CECCECECEDDECDBEDEBDBEDE >ss_pred CCCCCCCCCHHHHCCCEEEEEEEEECEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEEEEEEECCCCHHHEEEEHHHHHHHH HHHHCCCEEEEEEEECCEEEEEEC >ss_conf 9878756547661785036874210000122124766754202577999987313131235433689851998999766413668323543243799999 998489679999997140045429 >Consensus xxkxxxpltYExaxxPxxIgvrKsWxSxnTxnLxgxxxxxexxxeDxfIRkFixGtfxxxlxseiIIKRrxNxIxIaxlvxrxxxxxkxyFLxGYtEelL SxxlkCpVKlelqxvxxkviykyi >c3j6vV_ VGKGNKPVTYEEAHAPHYIAHRKGWLSLHTGNLDGEDHAAERTVEDVFLRKFMLGTFPGCLADQLILKRRANQVEICALVLRQLPAHKFYFLVGYSETLL SHFYKCPVRLHLQTVPSKVVYKYI >UniRef50_B3RZH0(2-104:107) Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3RZH0_TRIAD E=2e-12 s/c=0.71 id=32% cov=81% ---------------PYRYGVTVASESQNTGCISGSRQwTRERITDDLMIRSFIRGTFLPFLDHKrqtVVIKRKLNTIIVALFVVPRDQISRIYFLVGYA EKLMGAMFGCNVQLVLQT---------- >UniRef50_B6S353(15-178:179) Putative uncharacterized protein n=1 Tax=Philodina roseola RepID=B6S353_9BILA E=2e-50 s/c=1.09 id=33% cov=100% LRHSPVPRKDEQRQFPKLIGHTKSWNTFNTSNLRDGKRKSETVTDDLFIRQFLYGTWHNLFASEVIIKRRHNMIILSGLVTRTIHPRQMYFLIGYTEEIL SALLKSPVKMEIQSVENKddVIFTH- >UniRef50_B6RB79(29-169:169) Mitochondrial ribosomal protein S24 n=1 Tax=Haliotis discus discus RepID=B6RB79_HALDI E=6e-51 s/c=1.34 id=47% cov=101% ISvKGDKALTYEEANPPRMIGVRKSWNTWNTSNLKGEGRKAETTVDDIFIRRFIKGTFPTLVASEVIIKRRHNIITITTMMYQSINAQKMYFLWGYTEEI LSYFLKCPVKLEIQTITNKsdMIYKHI >UniRef50_UPI000186CF98(26-171:171) mitochondrial 28S ribosomal protein S3/S24, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186CF98 E=5e-49 s/c=1.18 id=40% cov=101% TLRKNKPINYEKSLGAHDIGHNKAWNSWNTSTLEGGLRVPETLLDDVFIRKFVYGTFPGMIHSEIIVKRIHNTIRIAMIIYPKMSSTKILFLVGYTEELL SNWLKCMVKLELQVIkhPDEVVFTHV >UniRef50_C4QFU2(1-166:166) Expressed protein n=2 Tax=Schistosoma RepID=C4QFU2_SCHMA E=5e-48 s/c=1.08 id=39% cov=101% TRDQSHPLTYEQAKKPHQIGLMKSWNSWNTSNLEGEDRyTSEVTLHDQFIRTFINGTFPLLVQSEVIIKRQCNVIRVAFLLLKRISPGEVSFLIGYTEEM LSLILRCVVKLEVQMVISKndVIFRYV >UniRef50_C1C2Y2(14-168:168) 28S ribosomal protein S24, mitochondrial n=2 Tax=Caligidae RepID=C1C2Y2_9MAXI E=6e-46 s/c=1.15 id=40% cov=101% TPRRTFGLTYEMSNLPKDIAYKKSWNSFNTAQLEgtflereaiGQDLPHKMVIEDMFIRKFMNGTWPDAFDTEILIKRTHNLIRIAGITNRYLQARKMYF LIGYTEEMLSLWLKCPVKLELQTAEkNATIVKYI >UniRef50_UPI000180CC4B(22-163:163) PREDICTED: similar to mitochondrial ribosomal protein S24 n=1 Tax=Ciona intestinalis RepID=UPI000180CC4B E=2e-44 s/c=1.10 id=45% cov=100% VSKMlNKPLTYDQAFKPNLIGVKKGWLSVHTGNLRGEQGSYQFTYEDELIRKFCVGTFYRMLPTDIVIKRRFNVIEI-TLLCNTVVTSKVLFLKAYSERL LSAFLKCHIKMHVFKLNNEdAIYKYI >UniRef50_Q688C0(2-164:164) 28S ribosomal protein S24, mitochondrial n=3 Tax=Chromadorea RepID=RT24_CAEEL E=1e-38 s/c=0.95 id=33% cov=101% TSNRTQLLTYEMAQKPHHIGVRKSWLTWHSQNLEEfRQSQPLVVAQDEVVRRFIRGFFPqNLVVSgnEIVIKRRGNVLIVAGFLqySRRLDIRRIYWMFG FAEEFLSILLKQPVKLEMAFVESEedVAYNYI >UniRef50_A7SH31(1-99:102) Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7SH31_NEMVE E=2e-31 s/c=1.28 id=39% cov=81% --------------PGYRVAVTKGFESQHTGSLKGSYGASDRLLDDVMIRKYIEGVFYDELDSDIIVKRRDNRIIISFLVNRETDINKFYFLTSFSEKIL SEAFGCIVKFEPQ----------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * V 1 * * * * * * * 2267 * 3467 * * * * * 3693 1404 2019 * * 1 231 2757 * 0 * * * 2741 1307 0 G 2 * * * * * 3919 * * * 3468 * * 2655 * 2587 1150 3884 * * * 2 97 3943 * 0 * * * 2781 1000 0 K 3 * * 3650 * * * 3527 * 986 * * 2705 * * 2512 * * * * * 3 95 3970 * 0 * * * 2781 1000 0 G 4 * * * * * 1944 * * 3468 * 3274 * * 3650 1708 2638 * * * * 4 157 3274 * 0 * * * 2781 1000 0 N 5 * * 2943 * * * * 3758 * * * 1353 3527 * * 3650 2069 * * * 5 0 * * * * * * 2781 0 0 K 6 * * * * 3558 * 3650 * 1140 * * * * 2137 3884 * * 3527 * * 6 0 * * * * * * 2781 0 0 P 7 3943 * * * * 3558 * * * 2137 * * 683 * * * * * * * 7 0 * * * * * * 2781 0 0 V 8 * * * * * * * 3468 * 532 * * * * 3527 * * 2931 * * 8 0 * * * * * * 2781 0 0 T 9 * * * * * * * * 3527 * * 3468 * * * * 281 * * * 9 0 * * * * * * 2781 0 0 Y 10 * * 3527 * * * * * * * * * * * * * * * * 131 10 0 * * * * * * 2781 0 0 E 11 * * 3274 157 * * * * * * * * * * * * * * * * 11 0 * * * * * * 2781 0 0 E 12 * * * 2350 * * * * 3468 * 1172 * * 1890 * * * * * * 12 0 * * * * * * 2781 0 0 A 13 438 * * * * * * * * * * * * * 3527 2512 * * * * 13 0 * * * * * * 2781 0 0 H 14 * * * * 3274 * 2931 * 3650 3468 * 1492 * 2058 * * * * * * 14 0 * * * * * * 2781 0 0 A 15 3099 * * * 3655 3629 * * 1702 3666 * * 1570 * * * * * * * 15 0 * * * * * * 2912 0 0 P 16 3943 * * * * 3466 * * * * * * 244 * * * * * * * 16 0 * * * * * * 3057 0 0 H 17 * * * 4009 * * 1047 * 2978 * * 3584 * * 4206 * * * * 2400 17 0 * * * * * * 3057 0 0 Y 18 * * 2937 * 3186 * 2884 * * 2788 4206 * * 3972 2400 * * * * 2540 18 0 * * * * * * 3057 0 0 I 19 * * * * * * * 401 * * 4236 * * * * * * 3466 * 3337 19 0 * * * * * * 3057 0 0 A 20 1912 * * * * 573 * * * * * * * * * * * 4009 * * 20 0 * * * * * * 3057 0 0 H 21 4009 * * * * * 1771 * * 3972 * * * * * * * 956 * 3932 21 0 * * * * * * 3057 0 0 R 22 * * * * * * * * 2748 * 3972 3943 * * 1085 * 1995 * * * 22 0 * * * * * * 3057 0 0 K 23 * * * * * * * * 150 * * * * * * * * 3337 * * 23 0 * * * * * * 3057 0 0 G 24 2608 * * * * 1818 * * * * * * * * * 856 * * * * 24 0 * * * * * * 3057 0 0 W 25 * * * * 3466 * * * * * * * * * * 3337 * * 303 * 25 0 * * * * * * 3057 0 0 L 26 * * * 2400 * * * * * 1605 * 1053 * * * * * * * * 26 0 * * * * * * 3057 0 0 S 27 * * * * * * * * * * * * * * * 417 1994 * * * 27 0 * * * * * * 3057 0 0 L 28 * * * * 2978 * * * * 3187 * * * 2400 * * * 3584 1028 * 28 0 * * * * * * 3057 0 0 H 29 * * * * * * 1083 * * * * 922 * * * * * * * * 29 0 * * * * * * 3057 0 0 T 30 * * * * * * * * * * * * * * * 2884 210 * * * 30 0 * * * * * * 3057 0 0 G 31 3932 * * * * 1199 * * * * * * * 2884 * 1461 * * * * 31 0 * * * * * * 3057 0 0 N 32 * 3337 * * * * * * * * * 682 * 3932 * 3466 3036 * * * 32 0 * * * * * * 3057 0 0 L 33 * * * * * * * 3337 * 355 4136 * * * * * * 4009 * * 33 0 * * * * * * 3057 0 0 D 34 * * 3187 1600 * * * * 1923 * * * * * 2788 3337 * * 4236 * 34 98 3932 * 3170 170 * * 3057 1000 0 G 35 * * 2471 2407 * 664 * * * * * * * * * * * * * * 35 99 3914 * 0 * * * 3057 1000 0 E 36 4136 * * 1685 3854 2407 * * * * * * * 3076 3914 2400 * * * * 36 0 * * * * * * 3057 0 0 D 37 * * 2065 * * 4206 * * 4026 3036 * 4009 4236 2740 2572 * * * * 3466 37 0 * * * * * * 3057 0 0 H 38 * * * * * 2140 3187 * * 3932 * * * 2572 1461 3914 * * * * 38 256 2620 * 0 * * * 3057 1559 0 A 39 1981 * * * * * * * 3113 * * * 2439 3914 * 2713 2620 3943 * * 39 0 * * * * * * 3057 0 0 A 40 2204 * * * * * 3932 * * * * * 2928 3854 3337 1580 * * * 3584 40 0 * * * * * * 3057 0 0 E 41 * * 2800 957 * * * * 3932 3914 * * 3854 2834 * * * * * * 41 0 * * * * * * 3057 0 0 R 42 * * * * 3584 * * * * 3854 3932 * * * 1505 * 1739 2943 * * 42 0 * * * * * * 3057 0 0 T 43 3071 * * * * * * 3337 * 2685 * * * * * * 1457 1930 * * 43 0 * * * * * * 3057 0 0 V 44 3914 * * * 4236 * * 3031 * 2189 * * * * * * 2641 1760 * 3584 44 103 3854 * 0 * * * 3057 1000 0 E 45 * * 1434 1215 * * 3972 * * * * * * 2884 * * * * * * 45 0 * * * * * * 3057 0 0 D 46 * * 0 * * * * * * * * * * * * * * * * * 46 0 * * * * * * 3057 0 0 V 47 * * * 2192 * * * 3104 * 2641 3076 * * 3972 * * * 1634 * * 47 0 * * * * * * 3057 0 0 F 48 * * * * 757 * * * * 3584 2400 * * * * * * 2884 * * 48 0 * * * * * * 3057 0 0 L 49 * * * * * * * 511 * 3187 * * * * * * * 2407 * * 49 0 * * * * * * 3057 0 0 R 50 * * * * * * * * * * * * * * 0 * * * * * 50 0 * * * * * * 3057 0 0 K 51 * * * * * * * * 932 * * 4009 * 4026 2398 3337 3972 * * * 51 0 * * * * * * 3057 0 0 F 52 * * * * 137 * * * * * * * * * * * * * * 3466 52 0 * * * * * * 3057 0 0 M 53 * 3584 * * * * * 986 * 3127 2512 * * * * * * 3036 * * 53 0 * * * * * * 3057 0 0 L 54 * * * 2712 * * * * 4206 4160 * 2952 * 4236 2093 * 4136 3584 4214 2984 54 0 * * * * * * 3057 0 0 G 55 * * * * * 0 * * * * * * * * * * * * * * 55 0 * * * * * * 3057 0 0 T 56 * * * * 2884 * * * * * * * * * * * 370 3466 * * 56 0 * * * * * * 3057 0 0 F 57 * * * * 407 * * * * * * * * * * * * * 2024 * 57 0 * * * * * * 3057 0 0 P 58 * * * * * * 2099 * * 3337 * * 1018 * * * * * * 2524 58 99 3914 * 0 * * * 3057 1000 0 G 59 4136 * 2680 * * 2516 * * 4009 3972 * 2468 3337 3854 3584 * 4206 * * * 59 0 * * * * * * 3057 0 0 C 60 3932 2618 * 3466 3337 * * * * 1456 2752 3854 * * * * * * * * 60 0 * * * * * * 3057 0 0 L 61 * * * * 2404 * * 3943 * 986 * * * * * * * 2052 * * 61 103 3854 * 1585 585 * * 3057 1000 0 A 62 1845 4136 1972 * * 3854 3943 * * * * * 3584 3972 * * * 2961 * * 62 0 * * * * * * 3057 0 0 D 63 * * 2618 * * * 3337 * * * * 3854 * * * 943 2748 * * * 63 99 3914 * 1000 1000 * * 3057 1000 0 Q 64 * * 2524 696 * * * * 3337 * * * * 3187 * * * * * * 64 150 3337 * 1585 585 * * 3057 1000 0 L 65 * * * * * * * 1020 * 3187 * * * * * * * 1332 * * 65 0 * * * * * * 3057 0 0 I 66 * * * * * * * 829 * 3932 * * * * * * * 1428 * * 66 0 * * * * * * 3057 0 0 L 67 * * * * * * * 445 * 3187 * * * * * * * 2685 * * 67 0 * * * * * * 3057 0 0 K 68 * * * * * * * * 0 * * * * * * * * * * * 68 0 * * * * * * 3057 0 0 R 69 * * * * * * * * * * * * * * 0 * * * * * 69 0 * * * * * * 3057 0 0 R 70 * * * * * * * 3943 3337 * * * * 2452 767 * 3932 * * * 70 0 * * * * * * 3057 0 0 A 71 4160 3972 3466 * 3584 2401 1258 * * 3337 * * * * * * * * * * 71 0 * * * * * * 3057 0 0 N 72 * * * * * * * * * * * 0 * * * * * * * * 72 0 * * * * * * 3057 0 0 Q 73 * * * * * * * 3104 * 3932 4026 * * 3187 3466 * 1868 1823 * * 73 0 * * * * * * 3057 0 0 V 74 * * * * * * * 406 * 2401 * * * * * * * 4160 * * 74 0 * * * * * * 3057 0 0 E 75 * * * 2372 * * * 1372 * * * * * * 1675 * 4206 * * 4236 75 0 * * * * * * 3057 0 0 I 76 * * * * * * * 768 * 4026 * * * * * * * 1509 * * 76 126 * 3585 * * * * 3057 0 0 C 77 618 3047 * * * * * * * * * * * * * 2571 4080 * * * 77 0 * * * * 0 * 2942 0 1000 A 78 2585 * * * 2697 1624 * * * 2718 3943 * * * * * 2862 * * * 78 0 * * * * * * 3057 0 0 L 79 * * * * 2093 * * 2376 * 1105 4206 * * * * * * 4214 * * 79 0 * * * * * * 3057 0 0 V 80 * * * * * * * 3036 * 1575 4206 * * * * * 3932 1242 * * 80 99 3914 * 1000 1000 * * 3057 1000 0 L 81 * 3584 * * * * * * * 1792 * 2680 * 3854 4136 3914 4026 3337 * 3068 81 103 3854 * 1000 1000 * * 3057 1000 0 R 82 * * * * * * * * 3972 * * 3584 2608 3171 791 * * * * * 82 0 * * * * * * 3057 0 0 Q 83 4136 * * 3466 * * * * 2976 * * * * 3187 1509 4206 2788 * * 3932 83 0 * * * * * * 3057 0 0 L 84 * * 3337 * * * * 1745 * 1459 3943 * * * * * 3466 3584 * * 84 0 * * * * * * 3057 0 0 P 85 * * 1841 * * * 4026 * * * * 4206 3083 2604 * 2453 4136 3584 * * 85 0 * * * * * * 3057 0 0 A 86 2509 * * * * * * 1622 * * * * 1510 * * 3943 3584 * * * 86 0 * * * * * * 3057 0 0 H 87 * * * * * 3972 3187 * * 4009 * 3466 * 3221 1647 2455 3943 * * * 87 0 * * * * * * 3057 0 0 K 88 * * * 3972 * * * * 790 * * * * 4026 1754 * * * * * 88 0 * * * * * * 3057 0 0 F 89 * * * * 2772 * * 1739 * * 1737 * * * * * * 2765 * 3225 89 0 * * * * * * 3057 0 0 Y 90 * * * * * * 4009 * * 2752 * * * * * 3972 * * * 462 90 0 * * * * * * 3057 0 0 F 91 * * * * 210 * * * * * * * * * * * * * 2884 * 91 0 * * * * * * 3057 0 0 L 92 * * * * * * * * * 210 2884 * * * * * * * * * 92 0 * * * * * * 3057 0 0 V 93 * * * * 2884 * * 2015 3584 3118 * * * * * * 3466 1869 4206 * 93 0 * * * * * * 3057 0 0 G 94 3584 * * * * 276 * * * * * * * * * 3466 * * * * 94 0 * * * * * * 3057 0 0 Y 95 * * * * 2146 * * * * * * * * * * * * * * 370 95 0 * * * * * * 3057 0 0 S 96 2093 4009 * * * * * * * * * * * * * 1818 1252 * * * 96 0 * * * * * * 3057 0 0 E 97 * * * 0 * * * * * * * * * * * * * * * * 97 0 * * * * * * 3057 0 0 T 98 * * * 825 * * * * 2400 * * * * * 3584 * 2618 * * * 98 0 * * * * * * 3057 0 0 L 99 * * * * 2884 * * 2279 * 918 2952 * * * * * * * * * 99 0 * * * * * * 3057 0 0 L 100 * * * * * * * * * 150 3337 * * * * * * * * * 100 0 * * * * * * 3057 0 0 S 101 * * * * * 3337 * * * * * * * * * 150 * * * * 101 0 * * * * * * 3057 0 0 H 102 2037 * * 3466 * * 3198 2884 * 2952 * 3943 * * * * * * * 2139 102 0 * * * * * * 3057 0 0 F 103 3466 * * * 1735 * * 3972 * 2345 3337 * * * * * * * 2003 * 103 0 * * * * * * 3057 0 0 Y 104 * * * * 2400 * * * * 635 4136 * * * * * * * * 3187 104 0 * * * * * * 3057 0 0 K 105 * * * * * 2400 4009 * 672 * * * * 4136 3972 * * * * * 105 0 * * * * * * 3057 0 0 C 106 * 316 * * * * * * * * * * * 2884 * 4026 * * * * 106 0 * * * * * * 3057 0 0 P 107 * * * * * * 3584 3466 * * 3943 3337 875 * * * * 3098 * * 107 0 * * * * * * 3057 0 0 V 108 * * * * * * * 3584 * * * * * * * * * 126 * * 108 0 * * * * * * 3057 0 0 R 109 * * * * * * * * 445 * * * * 3337 3187 * 4136 * * * 109 0 * * * * * * 3057 0 0 L 110 * * * * 3466 * * * * 509 2273 * * * * * * * * * 110 0 * * * * * * 3057 0 0 H 111 * * * 498 * * 2372 * * * * * * * * * * 3337 * * 111 0 * * * * * * 3057 0 0 L 112 * * * * * * * 2116 * 1336 2884 * 3466 * * * * 2765 * * 112 0 * * * * * * 3057 0 0 Q 113 2884 * * * 3584 * * * * * * * * 586 * 4236 * 4009 * * 113 0 * * * * * * 3057 0 0 T 114 * * * * 2839 * * * 3411 * 3786 * * * * 3665 1068 2860 * * 114 0 * * * * * * 2934 0 0 V 115 3558 * * * * * * 2125 * 3274 * * * * * * * 780 * * 115 137 3468 * 1000 1000 * * 2781 1000 0 P 116 * * * 1622 * 3884 * 3650 * * * 3274 1809 * * * 2847 * * * 116 128 3558 * 0 * * * 2781 1000 0 S 117 * * 2661 * * * * * * * * 1273 * * 3970 1457 * * * * 117 0 * * * * * * 2781 0 0 K 118 3558 * * 1527 * * * * 816 * * * * * * * * * * * 118 1434 667 * 880 1131 * * 2781 2452 0 V 119 3274 * * * * * * * * * 3943 * * * * * 3558 421 * * 119 0 * * * * * * 2781 0 0 V 120 2705 * * * * * * 1019 * * * * * * * * * 1502 * * 120 0 * * * * * * 2781 0 0 Y 121 * * * * 1624 * * * * * * * * * * * * 3558 * 760 121 0 * * * * * * 2781 0 0 K 122 * * * * * * * * 762 * * 2705 * * 3650 * 2497 * * * 122 0 * * * * * * 2781 0 0 Y 123 * * * * * * 2046 3758 * * * * * * * * * * * 548 123 0 * * * * * * 2781 0 0 I 124 * * * * * * * 430 * 3849 * * * * * * * 2407 * * 124 0 * * 0 * * * 2708 0 0 //