HHsearch 1.5 NAME c3j6vU_ FAM FILE c3j6vU_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j6vU_.a3m DATE Sat Jun 21 08:22:10 2014 LENG 87 match states, 87 columns in multiple alignment FILT 52 out of 56 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.7 EVD 0.4466 0.7568 SEQ >ss_dssp CCHHHHHHSSSCCSCCCCCSSCCCSHHHHSCSTTTTTCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCC >sa_dssp DCDECCEEDEDCEDEEEEDEEEDEDCDECEEEDEEEEDEEEDEEEEDCDECEDEECEDDDDEEEEDDEDDDEDDEEDEEEEDEEEEE >ss_pred CCHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >ss_conf 950022320135613896899999999999616828999865862279999999999999999999999999999950288889999 >Consensus xxxhxxflxRTVxVxxxdvxxAxrxLxxilxxNxvxxxxrxQrfyeKPxxxRkrlrxErxrrxfxxxxxxkvxximxxxRxxxwxxc >c3j6vU_ MAKHLKFIARTVMVQEGNVEGAYRTLNRILTMDGLIEDIKRRRYYEKPCRRRQRESYETCRRIYNMEMARKINFLMRKNRADPWQGC >UniRef50_C1E317(78-147:151) Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E317_9CHLO E=4e-09 s/c=0.89 id=26% cov=79% ----------TVYVGdNNDVDRALRKLRRMMIGEGLVQEMKDRRYFRKGSDKRVEARSMREYKTRKQTLRRRLGWIMHR--------- >UniRef50_C5FNQ1(150-225:228) Putative uncharacterized protein n=1 Tax=Microsporum canis CBS 113480 RepID=C5FNQ1_NANOT E=8e-08 s/c=0.77 id=16% cov=85% -------LGRTVAVDPSrgvDVNQAFAMMEAQVARNKIRADQNAQRFHIRRGKKRKILKSKRWRILFKKSFQATVARCMELKR------- >UniRef50_C4Y9Y3(96-168:170) Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y9Y3_CLAL4 E=6e-13 s/c=1.03 id=23% cov=54% ---------RSVDVKFNNVAFAIGNVYSILKANNVRGQWQVQKRYMRPAKYRKEK-------------------------------- >UniRef50_C8V306(142-220:220) Putative uncharacterized protein n=2 Tax=Emericella nidulans RepID=C8V306_EMENI E=2e-12 s/c=0.93 id=19% cov=89% -------LGRDVAVvpeRGQDLEVALKRLSGILKENNVKYQYLDQKYHVRRGQMRKNLRIRRWRKLFAYSFAHTVGKI-QRMRAQGW--- >UniRef50_A9SDN9(169-251:285) Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SDN9_PHYPA E=6e-12 s/c=0.87 id=32% cov=91% ---------RTVMVEvtNDDLERAIRKMKRRLKDDNGIKLLREREYYRKPSELKVLARKERDKRIAKKEFRSKLKWITNRRssiRGEGWELC >UniRef50_Q8WZK1(41-118:121) 40S ribosomal protein mrp21, mitochondrial n=1 Tax=Schizosaccharomyces pombe RepID=RT21_SCHPO E=5e-11 s/c=0.88 id=26% cov=84% -AAETKDLGASVTVGNS-LTRAFRQVDRICQRNNVPRLFRSQRFYEKPSEKRSRVRSERHRARFRAGIVRLVNL------------- >UniRef50_C4R2P2(64-135:138) Putative uncharacterized protein n=1 Tax=Pichia pastoris GS115 RepID=C4R2P2_PICPG E=1e-13 s/c=1.08 id=22% cov=83% ---------RTVDVIDGNIGQALKQLNNLVRSNNVAQERRKQRFYLRPSKAKAELRMERNKRRFGKGFKRLLQIVNEAKR------- >UniRef50_A3LQY6(113-185:187) Predicted protein n=1 Tax=Pichia stipitis RepID=A3LQY6_PICST E=2e-12 s/c=1.00 id=21% cov=67% ---------RAVDVHYGGLGKAFAGVRRLGFTNKIKHYQKVQERYIRPAKYAKQKKREWWRRKFSE--------------------- >UniRef50_B0CSD2(34-110:111) Predicted protein n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0CSD2_LACBS E=7e-10 s/c=0.85 id=28% cov=83% ---------RSVKINGGKLAEGYRVLDTILGRNKVRVQLRRAERHEKKGVKRRRLSSERWRKRFAHEVRKKVELVIKiRNR------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 329 * * * * * * 2294 * * 1 0 * * * * * * 2321 0 0 A 2 539 * * * * * * * * * * * 2684 * * 2680 * * * * 2 0 * * * * * * 2746 0 0 K 3 1222 * * * * * * * 2679 * * 2452 * * 2106 * * * * * 3 0 * * * * * * 2994 0 0 H 4 * * * 2949 * * 362 * * * * * * 3433 * * * * * * 4 0 * * * * * * 2994 0 0 L 5 3224 * * * * * 2378 * * 2022 * * 3777 * * * 2171 2650 * * 5 0 * * * * * * 2994 0 0 K 6 3494 * * * * 3289 * * 1236 * * * * 3977 2598 2682 * * * * 6 0 * * * * * * 3044 0 0 F 7 * * 3218 * 422 * * * * * * * * * * * * * 2776 * 7 0 * * * * * * 3263 0 0 I 8 * * * * * * * 2683 * 746 4414 * * * 4398 4372 * 3243 * * 8 0 * * * * * * 4152 0 0 A 9 1288 * * * * 981 * * * * 4414 * * * * 4753 * * * * 9 0 * * * * * * 4152 0 0 R 10 5371 * * * * * * * 5118 * * * * * 78 * * * * * 10 0 * * * * * * 5018 0 0 T 11 5174 * 5553 * * * * 5297 5663 * * * * 3409 * 2624 623 * * * 11 0 * * * * * * 5057 0 0 V 12 * * * * 5433 * * 3519 * * * * * * * * * 169 * * 12 25 5877 * 1585 585 * * 5070 1000 0 M 13 4877 * 2147 * 3571 5489 3991 4294 5446 3733 2557 * 4745 * 5498 3631 3923 * * 4451 13 0 * * * * * * 5088 0 0 V 14 5232 * * * * * * 4509 * 4630 * * * * * * 5513 206 * * 14 139 3446 * 1035 966 * * 5088 2598 0 Q 15 * * 3832 2933 4663 3492 5229 4769 2829 * * 3859 * 2341 3328 5762 4506 * * 4712 15 68 4433 * 624 1510 * * 5088 1547 0 E 16 5782 * 4858 3208 4634 4579 4678 * 3854 * * 1563 2611 * 5728 4227 * * * 3747 16 55 4748 * 2384 307 * * 5099 1588 0 G 17 * * 4066 3903 4889 2000 * * 5589 * * 1511 5665 3606 5517 3405 * * * * 17 481 2040 4630 1407 683 * * 5099 3040 0 N 18 5447 * 1065 4720 * 3402 * * 4382 * * 1976 * * * * 3952 * * * 18 0 * * * * 0 * 5083 0 1330 V 19 5547 * * * 4337 * * 2699 * 2245 4670 * 3135 * * 5519 3560 1715 * * 19 37 5319 * 1585 585 * * 5272 1000 0 E 20 1631 * 3553 2305 * 3772 * 5575 * * 4083 4583 5576 * * 2972 5100 5868 * * 20 0 * * * * * * 5272 0 0 G 21 3780 * 5460 3651 5810 2609 * * 3336 5429 5662 5771 * 3182 2463 4358 3642 4001 * * 21 0 * * * * * * 5272 0 0 A 22 338 * * * * 2933 * * * 5519 * * * * * 4768 5699 * * * 22 0 * * * * * * 5272 0 0 Y 23 * 4433 * * 2138 * * 2868 * 1597 4648 * * * * * * 5497 * 2344 23 0 * * * * * * 5272 0 0 R 24 3098 * * 5319 * 3243 * * 2777 * * * * 3285 1150 4813 * 5827 * * 24 0 * * * * * * 5272 0 0 T 25 4466 * * * 5429 4199 5827 4291 3629 2930 3394 4687 * 2538 3362 4527 4607 3204 * * 25 0 * * * * * * 5272 0 0 L 26 * * * * * * * 3904 * 469 3470 5483 * 5518 * * * 3710 * * 26 0 * * * * * * 5272 0 0 N 27 * * 3559 3200 5162 3460 5537 * 4568 * 5575 1914 * 3218 3388 3403 5497 * * 5810 27 0 * * * * * * 5272 0 0 R 28 3095 * * * * 4264 * * 5575 5547 4646 4770 * 5519 1348 2618 3128 5638 * * 28 0 * * * * * * 5272 0 0 I 29 4949 * * * * * * 1680 4786 2341 4445 4909 * 4687 3709 5580 4267 2694 * * 29 0 * * * * * * 5272 0 0 L 30 * 2885 * 5729 * 5237 * 4548 * 1440 2606 * * * * * * 2038 * * 30 0 * * * * * * 5272 0 0 T 31 2585 * 5677 * 4210 3695 * 4434 3192 6385 * 3949 * 6163 2121 3336 3222 * * * 31 0 * * * * * * 5272 0 0 M 32 2866 * 4035 3326 * 5374 6050 * 3646 5580 6035 4542 * 4065 2212 3009 3945 4677 * * 32 0 * * * * * * 5272 0 0 D 33 5518 * 3299 2149 * * * * * * * 619 * * * * * * * * 33 0 * * * * * * 5272 0 0 G 34 * * * 5965 * 2035 * * 1492 * * 1979 * 4590 4913 4891 * * 5480 * 34 0 * * * * * * 5272 0 0 L 35 * * * * * 5532 5472 1517 * 2883 4625 * * * * * 6208 1262 * * 35 0 * * * * * * 5272 0 0 I 36 3298 * * * * * * 3633 2636 3075 * * 3529 5840 1522 6050 4419 5374 * * 36 0 * * * * * * 5272 0 0 E 37 3956 * 4775 3960 * 4175 3973 * 3105 * 5497 4142 * 2236 2942 5578 * 4243 * 3256 37 0 * * * * * * 5272 0 0 D 38 * * 1786 3337 * * 5937 5677 3967 3060 5578 * * 2289 5864 4500 4263 5278 * 5237 38 0 * * * * * * 5272 0 0 I 39 3875 * * 4881 3230 * 5607 3589 3884 2948 4472 * * 3189 4026 * 5319 3065 4317 3652 39 0 * * * * * * 5272 0 0 K 40 5576 * * 5480 * * 3990 * 1967 5666 5578 3655 * 4027 1318 * 5580 * * 4860 40 0 * * * * * * 5272 0 0 R 41 3392 * 4513 3740 * 6143 5580 5605 3423 2345 * 6460 5278 5943 2274 3803 6149 3401 * * 41 0 * * * * * * 5272 0 0 R 42 5481 * * * * * * 5607 4476 * * 4416 * 588 2956 * 3815 * * * 42 0 * * * * * * 5272 0 0 R 43 * * * 3169 * * * * 2325 * * * * 3593 910 4366 * * 5278 * 43 0 * * * * * * 5272 0 0 Y 44 * * * * 1084 * * * * * * * * * 1752 * * * * 2111 44 0 * * * * * * 5272 0 0 Y 45 * * * * 3081 * 1372 * * * * * * * * * * * * 1013 45 0 * * * * * * 5272 0 0 E 46 * * * 1081 * * * 2997 * 3387 3832 * * 4464 4451 * * 2785 * * 46 0 * * * * * * 5272 0 0 K 47 * * * * * * * * 871 * * * 5162 * 1233 * * * * * 47 0 * * * * * * 5272 0 0 P 48 * * * * * 3595 * * 3359 * * * 604 * 2629 * * * * * 48 0 * * * * * * 5216 0 0 C 49 2898 3745 * * 5612 1309 * * * * * 4679 * * * 3132 3079 * 4336 4435 49 0 * * * * * * 5052 0 0 R 50 4529 * 5116 3567 * * 5137 5178 2363 2950 3170 * * 2110 4438 * * 3743 * * 50 0 * * * * * * 5052 0 0 R 51 4029 * * 5693 * * * * 1456 3956 3690 * * 4305 2937 * 4531 3431 * 3384 51 0 * * * * * * 5052 0 0 R 52 3875 * * * * * * * 3522 5381 * * * 5235 332 * * * * * 52 42 5110 * 1000 1000 * * 5052 1000 0 Q 53 5599 * * 4507 * * 5196 5225 1098 * * * * 4367 1955 4242 * 4186 * * 53 0 * * * * * * 5038 0 0 R 54 * * 5599 3291 * * * 5635 * 3393 * 4203 * 2542 972 * 5258 * * * 54 0 * * * * * * 5038 0 0 E 55 4186 * 5301 5659 * * * 4521 1854 1045 * 5441 * * * * * 3796 * * 55 0 * * * * * * 5038 0 0 S 56 3374 * * 5163 * * * * 2241 4593 * 3165 * * 1390 3327 5063 * * * 56 0 * * * * * * 5013 0 0 Y 57 * * * * 5582 * 4358 5283 4258 * 2467 * * * 3005 1548 * * * 2286 57 0 * * * * * * 5013 0 0 E 58 * * * 504 * * * * 3988 5342 4328 * * 2923 5283 * * * * * 58 0 * * * * * * 5013 0 0 T 59 5235 * * 5198 * * * * 3036 * * 5200 * * 656 5063 4339 * 3588 * 59 0 * * * * * * 5013 0 0 C 60 4376 2763 5095 3976 * * 2984 * * * 5407 5557 * * * 3554 * * 1135 * 60 0 * * * * * * 4985 0 0 R 61 * * * * * * 5038 * 2395 4093 * 5036 * 5489 788 * 5255 * 5087 4915 61 0 * * * * * * 4985 0 0 R 62 1892 * * * * * * 5598 1918 * * 5395 * * 1349 * * * * 5106 62 0 * * * * * * 4985 0 0 I 63 * * 5079 5506 * * * 2101 4019 1824 * * * 4911 2183 * 3086 * * * 63 0 * * * * * * 4977 0 0 Y 64 5008 * * * 721 * * * * 4960 * * * * 4814 * * * 4911 1937 64 0 * * * * * * 4977 0 0 N 65 2875 * * 5339 * 5206 * * 1446 4713 5189 1949 * * 5106 3455 * * * * 65 0 * * * * * * 4933 0 0 M 66 5079 * 4268 2280 3624 * 4045 * 3012 * 3655 4103 * 4511 3764 4897 3469 4819 * 4933 66 0 * * * * * * 4905 0 0 E 67 * * 3211 1483 * 2376 * * * * 4222 * * * * 2039 4485 * * * 67 0 * * * * * * 4830 0 0 M 68 * * * * 1344 * * 4924 * 4410 1441 * * * * 4656 * 3081 * * 68 0 * * * * * * 4829 0 0 A 69 3404 * * 4067 * * * * 2092 * * 3093 * 2622 2071 4042 * 4924 * * 69 0 * * * * * * 4829 0 0 R 70 2810 * * 4785 * 4940 3930 * 2870 * * 5266 * 3088 1300 4783 * * * * 70 0 * * * * * * 4829 0 0 K 71 4761 * * * * * * * 935 2956 * * * * 3528 * 2154 * * * 71 0 * * * * * * 4829 0 0 I 72 * * * * * * * 1918 * 2736 3952 * * * * * * 942 * * 72 0 * * * * * * 4829 0 0 N 73 4404 * 3185 3804 * 3072 * * 3133 * * 1907 * 2328 * 3786 * * * * 73 0 * * * * * * 4819 0 0 F 74 * * * * 1457 * * 3204 3226 2329 * * * * 3490 * * * 2918 * 74 0 * * * * * * 4792 0 0 L 75 * 4293 * * * * * 1221 * 2275 * * * * * * * 1674 * * 75 107 * 3803 * * * * 4794 0 0 M 76 4739 * * * * * * 4621 3626 3370 1036 4630 * 4300 * * 3568 3623 * * 76 0 * * * * 0 * 4717 0 1291 R 77 3508 * 3620 3404 * * 3395 * 2674 * * 4383 * 3587 1500 * * * * * 77 72 4354 * 0 * * * 4691 1000 0 K 78 2480 * * * * 3319 * * 1784 3926 * * * * 1457 * * * * * 78 0 * * * * * * 4508 0 0 N 79 * * * * * * 3148 * 2532 * 3143 1408 * 3295 3031 * * * * * 79 105 3836 * 1585 585 * * 4272 1000 0 R 80 * * * * * * * * * * * * * * 0 * * * * * 80 0 * * * * * * 4272 0 0 A 81 1595 * * 4040 * 3300 4345 * * * * * 2770 * 2910 * 2997 4254 * * 81 0 * * * * * * 3661 0 0 D 82 * * 2111 1318 * * * * * * * 3220 * 2467 * 3656 * * * * 82 220 2823 * 0 * * * 3661 1437 0 P 83 * * * * * 1824 * * 3893 * * * 769 * * 3980 * * * * 83 0 * * * * * * 3661 0 0 W 84 * * * * 3381 * 3893 * * * * * * * * * * * 455 3220 84 0 * * * * * * 3661 0 0 Q 85 * * * 2412 * * * * * 2112 * * 995 3663 * * * * * * 85 0 * * * * * * 2793 0 0 G 86 * * * * * 300 * * * 2412 * * * * * * * * * * 86 0 * * * * * * 2793 0 0 C 87 * 0 * * * * * * * * * * * * * * * * * * 87 0 * * 0 * * * 2524 0 0 //