HHsearch 1.5 NAME c3j60f_ FAM FILE c3j60f_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j60f_.a3m DATE Mon Feb 10 11:15:20 2014 LENG 71 match states, 71 columns in multiple alignment FILT 23 out of 27 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.8 EVD 0.4473 1.3527 SEQ >ss_dssp CCCCCSSCCCCCCSCCCCCCTTCCEECSSSCCEECSSCCCCCTTTTSCCCCCCBTTBCCCSSSSSCCCCCC >sa_dssp EEEEEEEEEEEEEEEEEEEDDEDDEEDEEEEEDEDDCDCBECEECECDCBBDEDEEDCDAEECEEDDEDEE >ss_pred CCCCCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEC >ss_conf 96347653666211357877667997089985731245189986631167414535430367402678869 >Consensus kxyttpkkikHkxkkvKLavLxxykVdxxxgKVxrlrxeCpnxxCgxGxfMAxHxDRxyCGkCxlTyxxxk >c3j60f_ KTYTKPKKIKHKHKKVKLAVLQFYKVDDATGKVTRLRKECPNNDCGAGTFMANHFDRHYCGKCGLTYVYNQ >UniRef50_UPI0000DC1016(82-141:145) UPI0000DC1016 related cluster n=1 Tax=Rattus norvegicus RepID=UPI0000DC1016 E=3e-07 s/c=0.94 id=56% cov=86% KSYTTPK--KNKHEKVKLAVLKYYEV-DKNGKI--------KNVLLMNVVMGSHFDRHYYGKCCPTYWFNK >UniRef50_UPI00006CAF49(88-144:189) Ribosomal protein S27a containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CAF49 E=2e-09 s/c=1.12 id=53% cov=82% ----------HRHVHTKLGALAFYKL-ENNGKVSLQQKGCPK--CGPGIFMAKHYDRHYCGKCHLTLKID- >UniRef50_B0E930(87-132:139) 40S ribosomal protein S31, putative n=2 Tax=Entamoeba RepID=B0E930_ENTDI E=1e-05 s/c=1.11 id=55% cov=66% -----------------LACLTHYNVTSA-GKVERLRKCCANKKCGVACFLAQHKDRLTCGKCH------- >UniRef50_A8BNY1(83-134:137) Putative uncharacterized protein n=2 Tax=Giardia intestinalis RepID=A8BNY1_GIALA E=2e-11 s/c=1.35 id=47% cov=75% --------IKHEPKKVRLACLKYYTI--KGDTAEPTREYCPN--CGPGIRIARHADRCHCGRCG------- >UniRef50_Q173F2(86-128:132) Putative uncharacterized protein (Fragment) n=5 Tax=Coelomata RepID=Q173F2_AEDAE E=9e-08 s/c=1.35 id=52% cov=62% ---------------------------DEHGKIH-LRRECTSESCCAGVVMATHEDRHYCSKCHLTLIYSK >UniRef50_Q98S99(68-113:115) 40S ribosomal protein S27A n=1 Tax=Guillardia theta RepID=Q98S99_GUITH E=1e-05 s/c=1.10 id=53% cov=66% -----------------LRVLSYYHLDQN--KITRILKESPDS---PGCFMANHFNRITCGKTGLTFL--- >UniRef50_Q6A1P6(91-147:177) Putative uncharacterized protein n=1 Tax=Euplotes vannus RepID=Q6A1P6_EUPVA E=1e-11 s/c=1.25 id=43% cov=82% --------IPHKHENIKMRVLSYFEVD-KNGKIEKLKQESPEQ---AGCYLADHKDRMHCGKTG--YMFYK >UniRef50_Q3LWK0(24-87:91) Ribosomal protein S27a n=1 Tax=Bigelowiella natans RepID=Q3LWK0_BIGNA E=2e-10 s/c=1.04 id=38% cov=92% ----TPKKISHIRKKVKCSILNIIKINSNGLQVNEI---CRNKSCFYSCFLANHSNRNSCGRCGRSYIKKK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 0 * * * * * * * * * * * 1 0 * * * * * * 1689 0 0 T 2 * * * * * * * * * * * 2108 * * * 1351 3059 1966 * * 2 0 * * * * * * 1706 0 0 Y 3 * * * * * * * * * * * * * * * * * * * 0 3 0 * * * * * * 1906 0 0 T 4 2862 * * * * * * * * * * * * * * 3463 374 * * * 4 0 * * * * * * 1906 0 0 K 5 3195 * * * * * * * 3823 * * * * * * * 286 * * * 5 0 * * * * * * 2197 0 0 P 6 * * * * * * 3195 * * * * * 167 * * * * * * * 6 0 * * * * * * 2197 0 0 K 7 * * * * * * * * 0 * * * * * * * * * * * 7 153 * 3315 * * * * 2197 0 0 K 8 * * * * * * * * 0 * * * * * * * * * * * 8 0 * * * * * 0 2105 0 1000 I 9 * * * * * 3313 * 688 * * * 3107 * * * 3464 * 3794 * * 9 0 * * * * 0 * 2571 0 1000 K 10 * * * * * * * * 421 * * * 3211 * * 2782 * * * * 10 0 * * * * * * 2651 0 0 H 11 * * * * * * 203 * * * * 3675 * * 4245 * * * * * 11 0 * * * * * * 2775 0 0 K 12 * * * 2571 * * * 2950 1033 * * * * * 2228 * * * * * 12 0 * * * * * * 2775 0 0 H 13 * * * * * * 1084 * 2708 * * * 2798 * 2111 * * * * * 13 0 * * * * * * 2775 0 0 K 14 * * * 2650 * * * * 549 * * * * * 3693 * * 3645 * * 14 0 * * * * * * 2775 0 0 K 15 * * * * * * 3645 * 369 3952 * 3627 * * * * * * * * 15 0 * * * * * * 2775 0 0 V 16 * * * 2817 * * * 3627 * * * * * * * * 3645 520 * * 16 0 * * * * * * 2775 0 0 K 17 * * * 3693 * * * * 266 * * * * * 3458 * * * * * 17 0 * * * * * * 2775 0 0 L 18 * 3148 * * * * * * * 360 3213 * * * * * * * * * 18 0 * * * * * * 2966 0 0 A 19 587 * * * * 4095 * * * * * * * * 2616 3148 * * * * 19 0 * * * * * * 2966 0 0 V 20 3287 2943 * * * * * 3247 * * * * * * * * 3743 767 * * 20 0 * * * * * * 2921 0 0 L 21 * * * * * * * * * 0 * * * * * * * * * * 21 0 * * * * * * 2921 0 0 Q 22 4166 * * * * * * * 1189 * * 2753 * 3959 3388 2815 4172 * * * 22 0 * * * * * * 2921 0 0 F 23 * * * * 2023 * 2605 3247 * * * * * * * * * * * 1046 23 0 * * * * * * 2921 0 0 Y 24 * * * * 3269 * 4038 3247 * * * * * * * * * * * 454 24 0 * * * * * * 2921 0 0 K 25 * * * 3019 * * 4274 * 728 * * 4172 * * 4381 4538 3746 * * * 25 0 * * * * * * 2921 0 0 V 26 * * * * * * * 2005 * 3219 * * * * * * * 636 * * 26 402 4418 2347 1585 585 * * 2921 1000 0 D 27 * * 429 * * 4110 * * * * * 2955 * * * * 3827 * * * 27 350 * 2217 * * 619 1518 2740 0 1798 D 28 * * 1240 1873 * * * * * * * * * 3930 * 2071 * * * * 28 654 * 1456 * * 324 2313 2844 0 2012 A 29 2646 * * 3583 * 3264 * * 1570 * * 1987 * * * * * 3973 * * 29 222 * 2808 * * 231 2754 2910 0 1968 T 30 * * 3461 4683 * 2057 4126 * * * 4207 1294 * * * 3701 4892 * * * 30 0 * * * * 509 1750 3064 0 1661 G 31 * * 3034 * 4605 433 * * * 3381 * * * * * * * * * * 31 0 * * * * 0 * 2969 0 1000 K 32 * * * * * * * * 321 * * * * 3465 * 4679 3841 * * * 32 0 * * * * * * 3002 0 0 V 33 3841 * * * * * * 1302 * * * * * * * * * 930 * * 33 93 * 3997 * * * * 3002 0 0 T 34 * * * 1665 4453 * 3482 * 4511 * * 3397 * 4940 * 2772 2453 4353 * * 34 69 * 4426 * * * 0 2935 0 1000 R 35 * * * 3250 * * * * 2867 4167 * * 3118 * 769 * * * * * 35 0 * * * * 782 1256 2878 0 1372 L 36 * * * * * * * 2983 * 741 * * * 3441 3871 * 3122 * * * 36 123 * 3610 * * * 0 3030 0 1000 R 37 * 3844 * * * * * * 3302 3220 * * * 4362 571 * * * * * 37 0 * * * * * 0 2864 0 1585 K 38 * * 4477 3619 * * * * 1448 4393 * * * 4162 1582 * * * 3844 * 38 0 * * * * * 0 2864 0 1585 E 39 * 4169 3172 712 * 4362 * * * * 4393 * * 4457 * * * * * 3619 39 0 * * * * 830 1193 2864 0 1585 C 40 * 329 * * * * * * * * * * * * 3871 2884 * * * * 40 62 * 4581 * * * 0 3030 0 1000 P 41 4433 * * 4325 * * * * * 4179 * * 736 4808 3560 4958 3390 * * * 41 0 * * * * 1193 830 3002 0 1293 N 42 * * 3452 4196 * 3400 * * 3221 * * 1156 * 3777 * 2938 * * * * 42 261 * 2593 * * 0 * 3081 0 1000 N 43 4851 * 2507 2839 * * * * 2571 * * 3397 2488 4007 * 2777 * * * * 43 264 * 2582 * * * 0 2854 0 1703 D 44 * * 4746 2100 * * * * 3314 * * 2972 * 4205 * 2146 3520 2899 * * 44 0 * * * * 1396 690 2829 0 2198 C 45 * 104 * * * * * * * 3842 * * * * * * * * * * 45 78 4243 * 0 * 1667 545 3058 1000 1767 G 46 4400 2711 4409 * 3478 746 * * * 3901 * * * * * * * * * * 46 0 * * * * 0 * 2967 0 1567 A 47 1436 * * * * 4945 * * 4458 * 4001 * 2087 * 4374 * * 2954 * 3692 47 0 * * * * * * 3107 0 0 G 48 4598 * * * * 288 * * * * * 4001 * * * 3692 * * * * 48 90 * 4055 * * * * 3107 0 0 T 49 4491 1873 * * * * * 3046 * * * * * * * 4605 2770 1419 * * 49 0 * * * * * 0 3054 0 1000 F 50 * * * * 587 * * * * 3536 * * * * 3736 * * 3088 * 4173 50 0 * * * * * 0 3054 0 1000 M 51 * * * * * * * 3736 * 2260 482 * * * * * * * * * 51 0 * * * * 0 * 3054 0 1000 A 52 189 * * * * 3028 * * * * * * * * * * * * * * 52 0 * * * * * * 3107 0 0 N 53 4374 * 4289 4715 * 4055 * * 2944 * * 2486 * 3164 3790 2162 4481 4579 * * 53 0 * * * * * * 3107 0 0 H 54 * * * * * * 62 * * * 4579 * * * * * * * * * 54 0 * * * * * * 3107 0 0 F 55 3255 * * 3529 1690 * 4546 * 2282 4475 * 4374 * * * 3114 * * * 4585 55 0 * * * * * * 3107 0 0 D 56 * * 326 * * * * * * * * 2307 * * * * * * * * 56 70 4394 * 0 * * * 3107 1000 0 R 57 * * * * * * * * * * 4022 * * * 92 * * * * * 57 0 * * * * * * 3057 0 0 H 58 * 3736 4482 5164 * * 1243 4479 4628 2620 4246 3655 * * * * 4330 * * * 58 0 * * * * * * 3057 0 0 Y 59 * * * * * * 2969 * * * * * * * * 3655 2963 * * 589 59 0 * * * * * * 3057 0 0 C 60 * 171 * * * * * * * * * * * * * * * * * 3165 60 0 * * * * * * 3057 0 0 G 61 4399 * * * * 144 * * * * * * * * * 4400 * * * * 61 0 * * * * * * 3057 0 0 K 62 * * * * * * * * 613 * * 4383 * * 1746 * * * * * 62 0 * * * * * * 2979 0 0 C 63 * 223 * * * * * * * * * * * * * * 2806 * * * 63 0 * * * * * * 2979 0 0 G 64 * 3311 * * * 1450 1322 * * * * * * 4316 * 4219 5094 * * * 64 92 * 4023 * * * * 2979 0 0 L 65 * * 4414 * * * * * * 602 * * 3590 * 3224 3262 * * * * 65 0 * * * * * 0 2757 0 1000 T 66 4025 * * * * * * * * * * * * * * 3224 362 4231 * * 66 0 * * * * 0 * 2757 0 1000 Y 67 * * * * 4055 * * * * 2149 4139 * * * * * * * * 605 67 0 * * * * * * 2807 0 0 V 68 * 4704 * * * * * 2504 2573 2905 3610 * * * * * * 1668 3523 * 68 0 * * * * * * 2790 0 0 Y 69 * * * * 1572 * * 3443 2705 * * * * * * * * 2759 * 1886 69 0 * * * * * * 2736 0 0 N 70 * * 2456 * * * * * 2677 * * 1729 * 2743 * 3479 * * * 3051 70 0 * * * * * * 2714 0 0 Q 71 * * * * * * * * 374 * * * * 2130 * * * * * * 71 0 * * 0 * * * 2397 0 0 //