HHsearch 1.5 NAME c3j60b_ FAM FILE c3j60b_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j60b_.a3m DATE Sat Feb 8 08:22:29 2014 LENG 86 match states, 86 columns in multiple alignment FILT 28 out of 32 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.2 EVD 0.4148 0.1457 SEQ >ss_dssp CCCSSCSSSSSCCGGGTTTSCTTTCSSCCCSCCEEEEECSSSSSCEEEESSCCSCCBCSSSCSCBEECCSSSCEECSSCEEECCCC >sa_dssp EEDEECEDDEECEEEDCEECDEEECDEEDEDCCEBBADBEECEECCEBDACBEEECDBEECEEDBADDDEDDBECDEECEDDEDEE >ss_pred CEEECCCHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEECCCCEEEECCCCCEEEEECCCEEEECCCCEEEECCC >ss_conf 91101330108888999864344211106971589998188877017972676489945667534541584049327846996279 >Consensus xxxxxxvDllxpxxxxexxkhKxkrLvxxPnSxFmxVkCxxCxnixiVFShAxTxVxCxxCgxxLxxPTGGKaklxxxxxfrxkxx >c3j60b_ MVLSNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRKGD >UniRef50_A8BJL1(42-124:124) Ribosomal protein S27 n=1 Tax=Giardia lamblia ATCC 50803 RepID=A8BJL1_GIALA E=3e-25 s/c=1.39 id=48% cov=97% --VSMNVDLLYPDPVEEQRKHKLKRLVQGPNSYFLEIKCAGCQDIVVVYSHANTPVFCPGCTSQISIPTGGKCAFTSQVErYRQK-- >UniRef50_P38654(5-83:84) 40S ribosomal protein S27 n=7 Tax=Entamoeba RepID=RS27_ENTHI E=4e-24 s/c=1.42 id=50% cov=93% -----EVDLLNPTAASEAKAHKMKRLVPTPNSYFLEIKCPKCGATTTTFSHAHRQILCQKCGQPLGQPTGGKLKLTQQCKFRIK-- >UniRef50_A2DB88(3-83:86) Ribosomal protein S27 n=4 Tax=Trichomonas vaginalis RepID=A2DB88_TRIVA E=1e-22 s/c=1.32 id=42% cov=91% -----DVDILHPTVEQEAHTNKKMTLVPNPRSEFLSLRCPSCTGLTTAFSHSNVPVFCKNCQTPLATPTGGRILLADQVEIR---- >UniRef50_Q8SS34(4-79:85) 40S RIBOSOMAL PROTEIN S27 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SS34_ENCCU E=9e-21 s/c=1.33 id=40% cov=90% -------DLAFPTREKVGSTYKKDRLYREGNGFFMYVRCGGCRHTTCCYSHSQTNISCPGCGDIILTSSGGRAVVSPNCEFKK--- >UniRef50_A4WLR8(7-60:67) 30S ribosomal protein S27e n=20 Tax=Archaea RepID=RS27_PYRAR E=8e-15 s/c=1.51 id=44% cov=63% -----------------------KVLIPQPRSKFVKIRCPDCGNEQVTFSHAAMVVRCLVCGRVLAQPTGGKAKFA---------- >UniRef50_A0RY94(8-61:224) Ribosomal protein S27E n=1 Tax=Cenarchaeum symbiosum RepID=A0RY94_CENSY E=3e-13 s/c=1.41 id=38% cov=58% --------------------------VPEPTSRFVKIECESCGSPTIVYSMAKSAVNCRFCGNLLAEPAGGKAVL----------- >UniRef50_A9A5Z8(2-61:65) Ribosomal protein S27E n=2 Tax=marine archaeal group 1 RepID=A9A5Z8_NITMS E=3e-11 s/c=1.16 id=33% cov=64% --------------------------IPKPSSKFQKVNCNECGELQIVYSHASTQVACNSCGNAIAEATGSKAKINGKVS------ >UniRef50_O27364(13-58:63) 30S ribosomal protein S27e n=7 Tax=Euryarchaeota RepID=RS27_METTH E=2e-07 s/c=1.24 id=37% cov=53% ---------------------------------FLRVKCLDCGNQQVVFDRAASYVQCIICGKTLVEPTGGKSKIKAQ-------- >UniRef50_Q3LW62(8-85:93) Ribosomal protein S27 n=1 Tax=Bigelowiella natans RepID=Q3LW62_BIGNA E=3e-21 s/c=1.31 id=41% cov=92% ------LDLSNPSKKTEAKKHKLKRLIQSPNSHYIATKCLKCKKINIIFSHSVFWKTCVDCSTLLTRPSGGKFKSSKSMQIVKR-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1170 0 0 V 2 * * * * * * * * * * * * * * * * * 0 * * 2 0 * * * * * * 1170 0 0 L 3 * * * * * * * * * 687 * * * * * * * 1399 * * 3 0 * * * * * * 1518 0 0 S 4 1723 * * * * * * * * * * * * * * 520 * * * * 4 520 * 1723 * * * * 1518 0 0 N 5 * * * * * * * * * * 1000 1000 * * * * * * * * 5 0 * * * * * 0 1426 0 1000 D 6 * * 981 2051 * * * * * * * 1988 * * * * * * * * 6 0 * * * * 0 * 1972 0 1000 I 7 * * * * * * * 3169 * 2361 * * * * * * * 527 * * 7 0 * * * * * * 2323 0 0 D 8 * * 135 * * * * * * * * 3483 * * * * * * * * 8 0 * * * * * * 2725 0 0 L 9 * * * * 4368 * * 3322 * 232 * * * * * * * * * * 9 0 * * * * * * 2725 0 0 L 10 2952 * * * * * * 4954 * 419 * * * * * 3465 * * * * 10 0 * * * * * * 2762 0 0 N 11 * * * * 2952 * 1672 * * * * 1239 * 3801 * * * * * 4023 11 129 * 3549 * * * * 2762 0 0 P 12 * * * * * * * * * * * * 113 * * * 3725 * * * 12 0 * * * * * 0 2675 0 1000 P 13 3725 * 3926 4143 * * * 3672 * 4391 * * 4469 * * 1870 1485 * * * 13 0 * * * * 0 * 2675 0 1000 A 14 2197 * * 3549 4954 * * * 3465 4989 * * 2011 * 2952 * * 3407 * 3824 14 0 * * * * * * 2762 0 0 E 15 2387 * 4954 1000 * * * * 2623 * * * * 4242 * * * 4023 * * 15 0 * * * * * * 2762 0 0 L 16 * * * 1840 * * * * 2485 2670 * * * 3407 4242 2763 3465 * * * 16 0 * * * * * * 2762 0 0 E 17 * * * 284 * * * * 4338 * * * * * * * * 2952 * * 17 0 * * * * * * 2762 0 0 K 18 1590 * * * * 2952 * 4242 1885 * * * * 2908 3613 * * * * * 18 0 * * * * * * 2762 0 0 L 19 * * * * * * 3538 * 2174 4773 3764 * * 3907 1374 2946 * * * * 19 0 * * * * * * 2887 0 0 K 20 4018 4311 * * * * 4517 * 830 * * * * 5031 4828 * 2212 * * * 20 64 * 4517 * * * * 2887 0 0 H 21 * * * * * * 500 * * * * 2672 * * * * * * * 2879 21 0 * * * * 0 * 2899 0 1000 K 22 * * * * * * * * 0 * * * * * * * * * * * 22 0 * * * * * * 2887 0 0 K 23 * * * * 3907 * * * 828 1697 4018 * * * * * * * * * 23 0 * * * * * * 2887 0 0 K 24 * * 3053 * * * * * 433 * 3656 * * * 4072 * * * * * 24 0 * * * * * * 3024 0 0 R 25 * * * * * * 3206 * * * * 3985 * * 703 * 2778 3874 * * 25 0 * * * * * * 3024 0 0 L 26 * * * * * * * 3749 * 111 * * * * * * * * * * 26 0 * * * * * * 3024 0 0 V 27 * * * * * * * 1486 * * * * * * * * * 910 * 3176 27 0 * * * * * * 3234 0 0 Q 28 * * * * * * * * * * * * 1125 1215 3176 * * * * * 28 0 * * * * * * 3234 0 0 S 29 3728 * * 2511 * 3821 4207 * 4104 * 4219 2887 * 4249 * 1829 4536 * * * 29 0 * * * * * * 3234 0 0 P 30 * * * * * 3176 * * * * * * 169 * * * * * * * 30 0 * * * * * * 3234 0 0 N 31 * * * * * * * * * * * 779 * * 2120 3034 3939 * * * 31 0 * * * * * * 3471 0 0 S 32 * * * * * 2993 * * * * * * * * * 194 * * * * 32 0 * * * * * * 3595 0 0 F 33 * * * 3961 3119 * 2828 * 2851 * * * * * 3253 4786 * * * 1322 33 0 * * * * * * 3595 0 0 F 34 * * * * 125 * * * * * * * * * * * * * * 3591 34 0 * * * * * * 3900 0 0 M 35 * * * * * * * 2246 * 1964 1603 * * 4459 * 4657 * 3077 * * 35 0 * * * * * * 3900 0 0 D 36 3591 * 1795 3668 * * * * 1990 * * 4354 * * 2922 4115 * * * 4061 36 0 * * * * * * 3900 0 0 V 37 * * * * * * * 2023 * 4115 5529 * * * * * 3591 757 * * 37 0 * * * * * * 3900 0 0 K 38 * * * 4188 * * 4330 4354 876 * * 4459 * 4588 2431 * * 5096 * * 38 0 * * * * * * 3900 0 0 C 39 * 100 * * * * * * * * * * * * * * * * * 3894 39 0 * * * * * * 3900 0 0 Q 40 3656 * 4330 4188 * 4061 * 5348 4354 2266 * 3555 1704 5735 4820 5123 * * * * 40 0 * * * * * * 3900 0 0 G 41 * * 2032 4457 * 1531 * * 2625 * * 4353 * 4636 * 3149 * * * * 41 0 * * * * * * 3900 0 0 C 42 * 62 * * * * * * * * * * * * 4580 * * * * * 42 0 * * * * * * 3900 0 0 F 43 * * 4459 3659 3890 1945 * * 2542 5709 * * * 3651 4058 * 4113 * * 2644 43 0 * * * * * * 3900 0 0 N 44 4665 * 4665 3517 * 4113 4058 * 2120 * * 1281 * * * 4186 5677 * * * 44 0 * * * * * * 3900 0 0 I 45 * * * 2412 * * * 1549 4353 3275 * * 4186 4991 * * 3330 2918 * * 45 0 * * * * * * 3900 0 0 T 46 * * * * * * * * * * * 2922 3890 1435 * 5113 1465 4665 * * 46 0 * * * * * * 3900 0 0 T 47 * 4058 * * * * * 1818 * * 4636 3890 * * * * 1760 1980 * * 47 0 * * * * * * 3900 0 0 V 48 4113 4058 * * * * * 1577 * 4328 * * * * * * 3884 1219 * * 48 0 * * * * * * 3900 0 0 F 49 * * * * 322 * * * * * * * * * * * * * * 2322 49 0 * * * * * * 3900 0 0 S 50 4817 * 3519 * * 4328 * * * * * * * * * 344 4654 * * * 50 0 * * * * * * 3900 0 0 H 51 * * * * * * 752 * 3204 * 4186 4636 * 3890 2887 * * * * * 51 0 * * * * * * 3900 0 0 S 52 800 * * 3890 * * * * * * * * 3483 * * 1895 * * * * 52 0 * * * * * * 3900 0 0 Q 53 2638 * * * * * 3226 * 4186 * * 3363 * 1740 * 2564 5113 3590 * * 53 0 * * * * * * 3900 0 0 T 54 * * * * 3590 * * * * * 5142 4328 * * 4665 2298 893 4113 * * 54 0 * * * * * * 3900 0 0 V 55 3755 * 5241 4654 * * * * 3764 * * 4058 3363 3557 * * 2791 1811 3590 4991 55 0 * * * * * * 3900 0 0 V 56 * * * * * * * 2407 3590 * * * * * * * * 457 * * 56 0 * * * * * * 3900 0 0 V 57 4457 * * * 3363 * * 4065 3126 2438 * 3255 * 4991 4239 4058 2861 3163 * * 57 0 * * * * * * 3900 0 0 C 58 * 110 * * * * * * * * * * * * * * * * * 3762 58 0 * * * * * * 3498 0 0 P 59 4284 * 3762 5337 * * * 3777 3200 3057 * 3301 2857 3850 4134 * 5478 2643 * * 59 0 * * * * * * 3498 0 0 G 60 * * 3739 * 4134 1643 * 3208 4500 * * 3200 * * * 3459 * 2351 * * 60 0 * * * * * * 3498 0 0 C 61 * 0 * * * * * * * * * * * * * * * * * * 61 0 * * * * * * 3498 0 0 Q 62 4201 * * * * 1002 * * * * * 3647 * 3688 * 2216 3761 * * * 62 0 * * * * * * 3498 0 0 T 63 4023 * 3916 4696 * * * * 3777 4201 * 3022 * 4500 3647 3323 1477 * * * 63 0 * * * * * * 3498 0 0 V 64 3918 * 5355 * * * * 3495 * 2923 * 4201 3342 4362 * * 2224 1872 * * 64 0 * * * * * * 3498 0 0 L 65 * * * * 3762 * * 1959 * 580 * * * * * * * * * * 65 0 * * * * * * 3498 0 0 C 66 1386 1814 * * * 4500 * * * 3916 * * * * * 4362 3739 3334 * * 66 0 * * * * * * 3498 0 0 Q 67 * * * 2253 * * * 4362 3125 * * * * 1855 3739 * 2177 * * 4201 67 0 * * * * * * 3498 0 0 P 68 3918 * * * * * * * * * * * 274 * * 3224 * * * * 68 0 * * * * * * 3498 0 0 T 69 4134 * * * * * * * * * * * * * 4615 2825 394 * * * 69 0 * * * * * * 3498 0 0 G 70 * * * * * 66 * * * * * * * * 4478 * * * * * 70 0 * * * * * * 3401 0 0 G 71 * * * * * 103 * * * * * * * * * 3858 * * * * 71 0 * * * * * * 3401 0 0 K 72 * * * 4141 * * * * 306 * * * * * 2894 * * * * * 72 0 * * * * * * 3414 0 0 A 73 534 4016 * * 3552 * * 3978 * 4251 * * * * * 4426 * * * * 73 0 * * * * * * 3415 0 0 R 74 4016 * 4004 * * * * * 1099 3978 * 4878 * * 2540 * * 2840 * * 74 0 * * * * * * 3415 0 0 L 75 * * * * 3334 * * 2202 * 937 * * * * * 3552 * 3720 * * 75 0 * * * * * * 3415 0 0 T 76 2805 * * * * * * 3776 3633 * * 3295 * * * 1913 1574 * * * 76 0 * * * * * * 3184 0 0 E 77 3544 * 3539 1935 * 3196 * * 2430 * * * 2998 3847 * 3691 * * * * 77 0 * * * * * * 3137 0 0 G 78 * * * * * 1561 * * 3196 * * 2998 * 1650 * 3210 * * * * 78 0 * * * * * * 3137 0 0 C 79 * 834 * * * * * * * * 3185 * * * * * 4233 1858 * * 79 0 * * * * * * 2822 0 0 S 80 * * * 1618 * * * * 2594 * * * * 3185 * 1327 * * * * 80 145 3389 * 0 * * * 2822 1000 0 F 81 * * * * 572 * * 2131 * * * * * * * * * * * 3337 81 0 * * * * * * 2680 0 0 R 82 * * * * * * * * 2750 * * * * * 658 3334 * 3080 * * 82 0 * * * * * * 2680 0 0 R 83 * * * * * * * 3372 1190 * * * * 3157 1503 * * * * * 83 0 * * * * * * 2533 0 0 K 84 * * * * * * * * 302 * * * * * 2403 * * * * * 84 0 * * * * * * 2086 0 0 G 85 * * * * * 0 * * * * * * * * * * * * * * 85 0 * * * * * * 1000 0 0 D 86 * * 0 * * * * * * * * * * * * * * * * * 86 0 * * 0 * * * 1000 0 0 //