HHsearch 1.5 NAME c3j60K_ FAM FILE c3j60K_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j60K_.a3m DATE Mon Feb 10 11:16:10 2014 LENG 96 match states, 96 columns in multiple alignment FILT 44 out of 48 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.7 EVD 0.4383 1.4252 SEQ >ss_dssp CCCCHHHHHHHHHHHHHCSCCCCCSCCCCCCCSSCCSCHHHHHHHHHHHHTTSSEEEECCTTTCEEEECHHHHHHHTTTSCSSSCCCSCCCCCCCC >sa_dssp EEBDEECCDCAADCADEEBCBCBECDDEEDEBEDBDACBDCBBCAADBABEDEBBDEDEDEECDCBDCCEDADECADECDDEEEEDEEEEEEEDEE >ss_pred CCCCHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECHHHHHHHHHHHCCCHHHCCCCCCCCCC >ss_conf 945444689999999640759982078878874278733799999975201676653231032568882889999999819996446721013579 >Consensus MlipkxxrxxIyxxLfxeGVxvxkkdxxxxxHxexxvpNLxVxkxmxSLxSrgxVxexfxWxhxYxxLtxeGieyLRxyLxLpxxvvPxTxkkxxr >c3j60K_ MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSAR >UniRef50_C5LCQ9(2-96:128) Ribosomal protein S10, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LCQ9_9ALVE E=4e-33 s/c=1.49 id=41% cov=100% VLIRKEDRRTVYEHLFKEGVIVVEKKPTLKHHRQMEVANLHVMMIMKSLSSRDLVDEKFNWQWHYYTLNDDGIEYLRQYLHLPATAFPDTMTKQR- >UniRef50_A4HNV7(4-102:170) 40S ribosomal protein S10, putative n=4 Tax=Trypanosomatidae RepID=A4HNV7_LEIBR E=5e-29 s/c=1.29 id=38% cov=99% -YVPKSSRDNVYRFFFTEGVIACKKDrmgtwTGTLGGSTFTVPCIQVMQLMRSLKSRSLIKEQYAWRHYYWTLNDEGIAYMRNYLHLAPSVMPNTQKPSS - >UniRef50_A2G675(1-94:141) Plectin/S10 domain containing protein n=4 Tax=Trichomonas vaginalis RepID=A2G675_TRIVA E=5e-28 s/c=1.33 id=36% cov=99% MYMPTAIRRRILRYLFENGVLCV-SDIQSGTHEELDCLNIYPYQIGRAFVTKGFCIKTYAWSHAYYTLTDKGIEYLRNYFGLPANAAPATLREAE- >UniRef50_Q98RW8(1-87:93) 40S ribosomal protein S10B n=1 Tax=Guillardia theta RepID=Q98RW8_GUITH E=8e-21 s/c=1.16 id=38% cov=92% MIIEKRYRRKIYEELFKEGVYIVKDER-----FNYNCEKFIALKILKGLLSKGFVNEIYSWKYHYFVLNQEGLEYVRKLLNLPNGVVPNTHK---- >UniRef50_C6LNQ2(4-106:136) Ribosomal protein S10B n=2 Tax=Giardia intestinalis RepID=C6LNQ2_GIALA E=7e-13 s/c=0.73 id=28% cov=98% --IPKAVYKAVYAHLYENASLALKEYWRVGNVPgityidENGKPCnptyIHVNCIMQSLESRGVVKDTFAWRHHYYLLTEKGEQFIRRELDLADDVLPTP FSKPS- >UniRef50_Q3LVY9(1-82:84) Ribosomal protein S10 n=1 Tax=Bigelowiella natans RepID=Q3LVY9_BIGNA E=2e-08 s/c=0.73 id=27% cov=86% MLVSKFKLIKIYEKILNDGIIIIPKNFNRTYQFCNSFYAFHLKKVLISLHSRKFMNEILLGSNYYWTLTKKGERFLRNYFNL-------------- >UniRef50_A0CR54(28-121:159) Chromosome undetermined scaffold_25, whole genome shotgun sequence n=4 Tax=Paramecium tetraurelia RepID=A0CR54_PARTE E=3e-25 s/c=1.23 id=38% cov=99% --VKRQDRRKVYEYLLLEGVIVIKKDMALPLHAETGVKNLEVWMLLRSLRDKKLVDLVFSWQYYYYYLKAEGVKYVRDKLGIVEDVIPATFKKADK >UniRef50_Q8SS17(1-86:96) 40S RIBOSOMAL PROTEIN S10 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SS17_ENCCU E=4e-14 s/c=0.92 id=29% cov=83% MLVPTANKYKIKRRLLEK-KALLLEDTVLGNHRDLEIPNLHLKIFMKTMISYGYVQRIHVWRHSYFLLTPLGESRLREEL---------------- >UniRef50_Q4RUK8(5-41:1375) Chromosome 8 SCAF14994, whole genome shotgun sequence n=2 Tax=Tetraodon nigroviridis RepID=Q4RUK8_TETNG E=2e-07 s/c=1.52 id=41% cov=39% MLMPLRDLRAIYEVLFRDGVMVAKKDKRPqTKHPEIE------------------------------------------------------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 119 * * * * * * 3654 * * 1 0 * * * * * * 3440 0 0 I 2 * * * * 2905 * * 2675 * 1019 * * * * 4576 * * 5627 * 2697 2 0 * * * * * * 3587 0 0 I 3 * * * * * * * 1011 * 5176 2334 * * * * * * 1848 * * 3 0 * * * * * * 3758 0 0 P 4 4732 * * 4473 * * * * 3786 * * * 623 * 5238 2563 * * * * 4 0 * * * * * * 3758 0 0 K 5 * * * 4906 * * * * 637 3914 * * * * 3661 5170 2734 * * * 5 0 * * * * * * 3828 0 0 K 6 1606 * 3869 2908 4009 * * * 3039 * * * 5932 4127 3657 3638 5844 4821 * * 6 0 * * * * * * 3828 0 0 N 7 * * 2520 5062 * * 5786 4518 4009 * * 1538 * 4664 * 3209 3560 4286 * 4506 7 0 * * * * * * 3828 0 0 R 8 * * * * * * * 4935 2680 2803 * * 5062 5260 892 5523 * * * 4286 8 0 * * * * * * 3828 0 0 N 9 * * 3581 5062 * * * 2371 2506 5619 * 3473 * * 1620 * * 5170 * 4220 9 0 * * * * * * 3828 0 0 E 10 1306 * 5036 3975 * * * 5932 2171 5363 5324 5153 * * 3285 4133 5269 * * * 10 0 * * * * * * 3828 0 0 I 11 * * * * * * 5523 440 * * * * * * * 5062 * 2244 * * 11 0 * * * * * * 3828 0 0 C 12 * 6054 * * 5254 * 3491 * 4288 3584 5220 * * * * 4946 * * * 565 12 0 * * * * * * 3842 0 0 K 13 4340 * * 1299 * * * * 2927 * 5074 * * 3728 2203 5293 3950 * * * 13 0 * * * * * * 3842 0 0 Y 14 4011 * * 4674 3926 * 2874 * 3564 6584 * 6025 * 3311 4290 * * 3369 * 1567 14 0 * * * * * * 3835 0 0 L 15 * * * * 3926 * * 3765 * 381 * * 5573 5140 * * * 4522 * * 15 0 * * * * * * 3835 0 0 F 16 5140 * * * 671 * * 4322 * 2322 * * * * * * * * * 3418 16 0 * * * * * * 3835 0 0 Q 17 * * * 2817 * * 4925 * 1653 4943 * 3118 * 2724 2963 6154 3926 * * * 17 22 6025 * 1585 585 * * 3835 1000 0 E 18 * * 1969 906 * 5573 * * 4290 * * 3461 * 6030 * 4925 * * * * 18 76 * 4290 * * * * 3835 0 0 G 19 4192 * * * * 81 * * * * * * * * * * * * * * 19 0 * * * * 0 * 3656 0 1000 V 20 5304 4937 * * * * * 4094 4290 4996 * * * * * 4363 * 410 * * 20 0 * * * * * * 3835 0 0 L 21 4290 6041 * * 4765 * * 1887 * 1566 2692 * * * * * * 3396 * 4674 21 0 * * * * * * 3835 0 0 Y 22 3753 4566 * * 4331 * * 3098 * 4290 * * * * * 5163 5265 816 6154 5063 22 0 * * * * * * 3835 0 0 A 23 1184 3182 * * * * * 3457 * 2873 * * * * * * * 2170 * * 23 62 * 4566 * * * * 3835 0 0 K 24 5973 * * 3596 * * 4063 * 738 4210 * * 3515 4626 4055 * * * * * 24 0 * * * * 0 * 3768 0 1000 K 25 * * 4674 3326 * * * * 522 * * 3479 * * 4925 4566 * * * * 25 0 * * * * * * 3835 0 0 D 26 * * 559 3826 * * * * 5331 * * 3299 * * 5715 4135 * * * 4363 26 37 5288 * 2322 322 * * 3835 1000 0 Y 27 5513 * * 5836 1802 5820 4935 4566 4288 4458 4943 * 2936 5856 4069 5381 3283 6584 4363 4088 27 152 5163 3799 2322 322 * * 3835 1000 0 N 28 4850 * 5074 4152 * 4098 4924 * 3221 * * 2088 * 3663 2042 * 5317 3716 * 5467 28 59 * 4639 * * 938 1065 3783 0 1566 L 29 4046 * 5245 * 4162 * * 4484 * 1809 4493 * 3032 4542 3913 3948 4132 2950 * * 29 144 4007 4932 0 * 935 1068 3746 1325 1586 A 30 3902 4117 5630 5716 4756 2353 * * 4197 4100 * * 1761 5753 * 3754 3280 * * * 30 37 5301 * 0 * 938 1065 3780 1000 1555 K 31 * * * * * 4167 3654 * 1936 2734 3898 2955 5664 5855 3546 5186 4495 * * 3996 31 22 * 6016 * * * 0 3769 0 1000 H 32 * * * 4808 * 4145 337 * * * * * * 3943 * * * 4289 * * 32 0 * * * * 1048 953 3811 0 1497 P 33 3966 4922 * 2853 3346 5930 * 5648 4070 * * * 1290 * 3703 4284 4914 * * * 33 72 4358 * 2585 263 0 * 3840 1000 1000 Q 34 * 4094 2960 1014 * * 3862 * * 5897 * 4674 * 3626 * * 3653 4937 * * 34 20 6154 * 3000 193 * * 3835 1000 0 I 35 * * * * 3537 * * 2015 3960 1960 5331 3222 * * * * 3571 3474 * 4674 35 221 2815 * 283 2491 * * 3835 2170 0 D 36 * * 2360 2368 * 1841 * * 5163 * * 3041 4838 4996 * 4094 4101 * * * 36 117 3684 * 0 * * * 3835 1873 0 V 37 * 3610 * * 4243 * * 2193 4298 3997 5539 * * * * * 3759 1192 * * 37 0 * * * * * * 3754 0 0 P 38 5368 * * 3852 * * * * 2887 4524 * * 948 5919 3861 5479 4365 * * 4236 38 48 4944 * 1585 585 * * 3775 1000 0 N 39 4236 3649 * * * * * * 4733 * * 380 * * * 4981 5094 * * * 39 76 4276 * 2000 415 * * 3775 1000 0 L 40 * * * * 3463 * * 2518 * 483 * * * * * * * * 5688 * 40 0 * * * * * * 3775 0 0 Q 41 * * 5479 4385 * * 1365 3852 * * * * * 1657 * * * * * 2688 41 0 * * * * * * 3775 0 0 V 42 4733 4721 * * * * * 5530 * 3328 * * 4524 * * * * 396 * * 42 0 * * * * * * 3775 0 0 I 43 * * * * 5061 * * 1587 3328 4058 2264 4276 * * * * 4073 4504 4922 3619 43 0 * * * * * * 3775 0 0 K 44 * 4276 * * * * * 3567 1098 5364 2560 * * 3020 4400 * * 4950 * * 44 0 * * * * * * 3775 0 0 L 45 2192 * * * 3770 * * 2479 * 1997 5688 * * * * * 2722 3224 * * 45 0 * * * * * * 3775 0 0 M 46 * 4486 * * * 4524 * * * 1695 847 * * * * * 6758 4721 * * 46 0 * * * * * * 3775 0 0 Q 47 5657 * * * * 4466 * 4236 1740 * * * * 1629 1947 * * * * * 47 0 * * * * * * 3775 0 0 S 48 4524 * * * * 3405 * * * * * * * * * 294 4427 * * * 48 0 * * * * * * 3775 0 0 F 49 * * * * 2706 * * * * 357 3922 * * * * * * * * * 49 0 * * * * * * 3775 0 0 K 50 4138 5682 5193 4038 * * 3830 3665 1542 4014 * * * 5804 4244 5368 3452 3398 * * 50 0 * * * * * * 3775 0 0 S 51 4415 * 3815 * * * * * * * * * * * * 346 3393 * * * 51 0 * * * * * * 3755 0 0 K 52 * * * * * * * * 1470 * * * * * 838 4946 * * * 4408 52 0 * * * * * * 3780 0 0 E 53 5652 * 5370 3866 * 674 * * 2674 * * 3732 * * * 5125 * * * * 53 0 * * * * * * 3780 0 0 Y 54 * 5081 * * 1613 * * * * 2257 * * 5709 * * * * 3714 * 1561 54 0 * * * * * * 3793 0 0 V 55 5034 4455 * * * * * 4109 * 3857 4253 * * * * * * 426 * * 55 0 * * * * * * 3793 0 0 R 56 * * 3652 4128 * * * 4455 1298 * * 3244 * 4419 3086 * 3096 5386 * * 56 0 * * * * * * 3793 0 0 E 57 * * 4252 573 * * * * 4455 4918 * * * 5216 4419 * 3024 * * * 57 0 * * * * * * 3793 0 0 T 58 * * * * * * 5386 2392 2837 * * * * 1871 4446 4995 1933 4918 * * 58 0 * * * * * * 3793 0 0 F 59 * 5081 * * 691 * 4419 * * 3804 * * * * * * 4911 * * 2326 59 0 * * * * * * 3793 0 0 S 60 1596 4995 * * * * * * * 4253 * 2212 * * * 2113 4544 3386 * * 60 0 * * * * * * 3793 0 0 W 61 * * * * * 4253 * * * * * * * * * * * * 78 * 61 0 * * * * * * 3793 0 0 Q 62 * 5651 * * * 4220 * 5709 3454 * 4282 5034 * 1895 1445 3350 * * * * 62 0 * * * * * * 3793 0 0 Y 63 * 5081 * * 4706 * 946 * * * * 4253 * * * * 4220 * 3732 2109 63 0 * * * * * * 3793 0 0 Y 64 4455 5763 * * 3165 * 2571 * * 4225 * 4552 * 5502 * 4419 4706 * * 1142 64 0 * * * * * * 3793 0 0 Y 65 * * * * * * 5034 * * * * * * 5709 * * * * * 73 65 0 * * * * * * 3793 0 0 W 66 * * * * 2627 * * * * * * * * * * * * * 1126 1397 66 0 * * * * * * 3793 0 0 Y 67 * 4911 * * 2998 * 5709 4227 * 3024 * * * * * * 1522 3324 * 2337 67 0 * * * * * * 3793 0 0 L 68 * * * * * * * * * 0 * * * * * * * * * * 68 0 * * * * * * 3793 0 0 T 69 * * * * * * * * 4224 * * 1846 * * * * 581 * * * 69 0 * * * * * * 3729 0 0 N 70 4899 * 1849 3436 * * * * 3422 * * 1573 3246 4690 * * 5457 * * * 70 0 * * * * * * 3729 0 0 D 71 * * 3734 640 * * * * 2703 4381 * 5356 * 5431 4879 * * * * * 71 0 * * * * * * 3729 0 0 G 72 * * * * * 0 * * * * * * * * * * * * * * 72 0 * * * * * * 3729 0 0 I 73 * 4657 * 2693 * * * 916 * 3599 * * * * * * * 2373 * * 73 0 * * * * * * 3729 0 0 E 74 3247 * 3675 1054 * * * 4958 4167 * * 3721 * 4237 4220 4381 * 5931 * * 74 0 * * * * * * 3729 0 0 H 75 * * * 4792 1914 * 4467 * * * * * * * 4381 * * * * 724 75 0 * * * * * * 3729 0 0 L 76 * * * * * * * 4237 * 289 4151 * * * * * * 3791 * * 76 0 * * * * * * 3729 0 0 R 77 * * * * * * * * 4657 * * * * * 58 * * * * * 77 0 * * * * * * 3729 0 0 N 78 4833 6020 3607 1933 * * * * 3892 * * 2326 * 3296 3712 4402 3142 * * * 78 0 * * * * * * 3729 0 0 Y 79 * 4175 * 2970 4578 * * * 3293 4690 * * * * * * * 4548 4123 904 79 0 * * * * * * 3729 0 0 L 80 * * * * 3315 * * * * 153 * * * * * * * * * * 80 0 * * * * * * 3729 0 0 N 81 5036 * 3614 * * 2988 1325 * * * * 1994 * 4109 * * * * * 4224 81 0 * * * * * * 3622 0 0 L 82 * * * * 4894 * * 2848 * 382 * * * 4734 * * * 5460 * * 82 0 * * * * * * 3622 0 0 P 83 3445 * * * * 4992 * * * * * * 363 * * 4021 * 4731 * * 83 0 * * * * * * 3475 0 0 S 84 1565 * 4019 2605 * * * * * 4830 * 4441 2168 * * 3237 5255 * * * 84 0 * * * * * * 3475 0 0 E 85 * * 1798 1565 * 3781 5735 * * * * 4167 * * * 3271 3015 * * * 85 67 4458 * 0 * * * 3475 1000 0 I 86 2432 * * * * * * 1719 * * 5406 * * * * * * 1037 * * 86 0 * * * * * * 3475 0 0 V 87 4167 * * * 2774 * * 2781 * 3500 3859 * * * * * * 1013 * * 87 0 * * * * * * 3475 0 0 P 88 * * * * * * * * * * * * 0 * * * * * * * 88 0 * * * * * * 3475 0 0 A 89 1172 * 5233 5491 * 5735 * 4688 4458 4721 5226 3015 * * * 3333 3644 6232 5406 * 89 0 * * * * * * 3475 0 0 T 90 * * * * * * * * * * * * 3644 * * 4203 208 * * * 90 0 * * * * * * 3475 0 0 L 91 * * * * 2805 * 2059 * * 1173 3836 * * 4991 5085 * * * * 4562 91 0 * * * * * * 3509 0 0 K 92 * * * * * * * 3246 1088 4766 * * * 3136 4161 3101 3304 * * * 92 0 * * * * * * 3541 0 0 K 93 3692 * * 4062 * * * * 1101 * 4825 * 4425 4061 1973 * * * * * 93 0 * * * * * * 3426 0 0 S 94 2491 * * 5570 * 4656 7747 * 3597 * * * 3080 2511 3178 2948 3754 3916 * * 94 0 * * * * * * 3426 0 0 A 95 3076 * 4157 3000 * 4613 * * * * 5204 7071 3628 3444 2291 2481 * 3862 * * 95 0 * * * * * * 3177 0 0 R 96 * * * * * * * * 1824 * * * * * 479 * * * * * 96 0 * * 0 * * * 2343 0 0 //