HHsearch 1.5 NAME c3j60I_ FAM FILE c3j60I_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j60I_.a3m DATE Mon Feb 10 11:15:14 2014 LENG 66 match states, 66 columns in multiple alignment FILT 15 out of 19 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.3 EVD 0.4128 0.3112 SEQ >ss_dssp CCHHHHHHHHHSCSSSSCCHHHHHHHHHTCCCEEECSCTTTSCCCCEEECCHHHHHHHHHHHHHHC >sa_dssp EEEDDDDCDEEDDEEEEDEEDCDEBEEEEEDDDDEECEDEEDEEEEEDCBEDEDBDEDDEDDDEEE >ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHCC >ss_conf 923799999977522432899999831494689870699860100016850189999999653069 >Consensus xxxxxxkKxxxrxkxxxxdxxlxeqfxsGrllAxIsSRPGQxGradGYiLEGxELxfyxxKixxkK >c3j60I_ KSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKK >UniRef50_P48156(141-206:208) 40S ribosomal protein S8 n=68 Tax=Eukaryota RepID=RS8_CAEEL E=4e-21 s/c=1.55 id=55% cov=102% RSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPGQVGQANGYILEGKELDFYLRKIRAKK >UniRef50_Q4N3P0(130-186:188) 40S ribosomal protein S8 n=5 Tax=Eukaryota RepID=RS8_THEPA E=5e-12 s/c=1.26 id=53% cov=88% ---------ASEKVAALVPRTLLDQFSSGRLLACISSRPGQCGRCDGYVLEGEELNFYRRRMDKKK >UniRef50_Q9AW20(132-178:178) 40S ribosomal protein S8 n=1 Tax=Guillardia theta RepID=Q9AW20_GUITH E=8e-10 s/c=1.39 id=56% cov=73% ------------------NKILIDQILSGKILARICSRPGQSGRADGYILEGQELDYFLKKIQKK- >UniRef50_A6RAQ0(93-141:141) Predicted protein n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6RAQ0_AJECN E=1e-07 s/c=1.18 id=53% cov=74% ---------------GKVEPALEKQFEAGRLYAVVSSRPGQSGRVDGYILEGEELAFYQRAIR--- >UniRef50_Q8SWC9(118-167:173) ECU02_0880 protein n=3 Tax=Apansporoblastina RepID=Q8SWC9_ENCCU E=2e-05 s/c=1.00 id=47% cov=77% ---------------RDVDPSLHESFEKGHLYAIITSRPGQVGMAQGHVLQGDELKFYADKFNKK- >UniRef50_B0XC91(67-115:115) 40S ribosomal protein S8 n=1 Tax=Culex quinquefasciatus RepID=B0XC91_CULQU E=0.0003 s/c=0.94 id=48% cov=76% ----LLKKYAKRQKTAKMYPDLEVQ-------------PGQSGRVDGCLLEGKVLEFYNKKNKKSK >UniRef50_B0EV68(172-236:237) 40S ribosomal protein S8, putative n=5 Tax=Entamoeba RepID=B0EV68_ENTDI E=8e-15 s/c=1.25 id=54% cov=95% ----MQKKYAKKlevLKNMKFDEALLEGFQSGRILACISSRPGQTGSVEGYILEGKELDFYSKKISDKK >UniRef50_UPI00019254A7(129-177:184) PREDICTED: similar to ribosomal protein S8 n=1 Tax=Hydra magnipapillata RepID=UPI00019254A7 E=3e-09 s/c=1.28 id=48% cov=67% --------------------HIKELFESGKLYAKVTTKPGQVGLCDGYIVEGLELDNLVNKIK--- >UniRef50_UPI0000DBF3B2(49-187:187) UPI0000DBF3B2 related cluster n=1 Tax=Rattus norvegicus RepID=UPI0000DBF3B2 E=8e-37 s/c=0.47 id=52% cov=100% -NNKIQKKCVERKKNAKISSLLEEQFQQGKPLACTASRPGQCGRADGYMLEGKELEFYLWKIKPQK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 786 * * * * * 1251 * * * * * 1 0 * * * * * * 1659 0 0 S 2 * * * * * * * 2791 * * * 2551 * * * 546 * * * * 2 225 * 2791 * * * * 1729 0 0 N 3 * * * 2401 * * 2184 * * * * 760 * * * * * * * * 3 0 * * * * * 0 1717 0 1000 H 4 * * * * * * 613 * 1531 * * * * * * * * * * * 4 0 * * * * * 0 1903 0 1000 V 5 * * * * * * * 2755 * 2277 2824 * * * * * 2817 1464 * * 5 0 * * * * 0 * 2054 0 1000 V 6 * * * * * * * * * 1634 2084 * * 1566 * * * 3264 * * 6 0 * * * * * * 2040 0 0 R 7 2954 * * * * * * * 594 * * * * * 2261 * * * * * 7 0 * * * * * * 2040 0 0 K 8 * * * * * * * * 0 * * * * * * * * * * * 8 0 * * * * * * 2040 0 0 L 9 * 3123 * * * * * 3259 * 3264 * * * * 2954 * * * * 869 9 0 * * * * * * 2040 0 0 E 10 1264 * 3584 3390 * * * * 3443 3509 * * * * * * 3097 3208 * * 10 0 * * * * * * 2075 0 0 K 11 * * * 1335 * * * * 1705 * * 3443 * * * 2286 * * * * 11 0 * * * * * * 2075 0 0 R 12 * * * 3089 * * * * 3113 * * * * * 383 * * * * * 12 177 3113 * 1585 585 * * 2075 1000 0 Q 13 3443 * * * * * * * 1694 3113 * * * 1049 * * * * * * 13 0 * * * * * * 2075 0 0 Q 14 3443 * * 3515 * * * * 719 * * * * 3390 * * * 3089 * * 14 0 * * * * * * 2075 0 0 G 15 3140 * * * * 2762 * * 3663 * * 1359 * * * * 2378 * * 3682 15 0 * * * * * * 2177 0 0 R 16 1415 * 3274 * * 2783 * * * * 3655 * * 4123 2061 * * * * * 16 0 * * * * * * 2259 0 0 T 17 3632 * 2970 * * * * * 1024 3566 * * * * * 4153 2651 * * * 17 0 * * * * * * 2259 0 0 L 18 * * * * 3655 * * 2906 * 1874 3710 * * * * * * 1191 * * 18 0 * * * * * * 2259 0 0 D 19 * * 966 2906 * * * * * * * 3555 3675 * * 3059 * * * 3813 19 0 * * * * * * 2316 0 0 A 20 3031 * * 3759 * * * * 2519 * * * 1606 4266 3675 2552 * * * * 20 0 * * * * * * 2316 0 0 H 21 2471 * 3906 3622 * * 2326 3701 * 2562 * * * * * 2681 3832 * * * 21 0 * * * * * * 2373 0 0 I 22 * * * * * * * 1600 * 577 * * * * * * * * * * 22 0 * * * * * * 2373 0 0 E 23 * * * 1224 * * 3228 2861 3128 2229 * * * * * * * * * * 23 0 * * * * * * 2373 0 0 E 24 * * 1657 876 * * * * 3811 * * * * * * * * 3906 * * 24 0 * * * * * * 2373 0 0 Q 25 * * * * * 4013 * * * 3128 * * * 480 * 3228 * * * * 25 100 * 3906 * * * * 2373 0 0 F 26 * * * * 265 * * 2577 * * * * * * * * * * * * 26 0 * * * * * 0 2318 0 1000 G 27 4460 * * 1683 * 4394 * * * 3605 * 3966 * 2079 3549 3717 4283 * * * 27 0 * * * * * 0 2318 0 1000 S 28 3671 * * * * 3549 * * 3118 * * * * 3077 * 1039 3111 * * * 28 0 * * * * * 0 2318 0 1000 G 29 * * 3549 * * 129 * * * * * * * * * * * * * * 29 0 * * * * * 0 2318 0 1000 R 30 * * * * * * 2318 * 1651 * * * * * 1056 * * * * * 30 0 * * * * * 0 2318 0 1000 L 31 * * * * * * * 1569 * 755 * * 3830 * * * * * * * 31 0 * * * * * 0 2318 0 1000 L 32 * * * * * * * * * 538 * * * * * * * * * 1683 32 0 * * * * * 0 2318 0 1000 A 33 77 * * * * * * * * * * * * * * * * 4272 * * 33 0 * * * * * 0 2318 0 1000 C 34 * 1130 * * * * * 3118 3087 * * * * * 2110 * * 3671 * * 34 0 * * * * * 0 2318 0 1000 I 35 * * * * * * * 447 * * * * * * * * 3830 2350 * * 35 0 * * * * * 0 2318 0 1000 S 36 3077 3605 * * * * * * * * * * * * * 820 2103 * * * 36 0 * * * * * 0 2318 0 1000 S 37 * * * * * * * * * * * * * * * 181 3087 * * * 37 0 * * * * * 0 2318 0 1000 R 38 * * * * * * * * 3087 * * * * * 289 3966 * * * * 38 0 * * * * 0 * 2318 0 1000 P 39 * * * * * * * * * * * * 0 * * * * * * * 39 0 * * * * * * 2373 0 0 G 40 * * * * * 0 * * * * * * * * * * * * * * 40 0 * * * * * * 2373 0 0 Q 41 * * * * * * * * * * * * * 0 * * * * * * 41 0 * * * * * * 2373 0 0 C 42 * 1685 * * * * * * * * * * * * * 2218 3169 1462 * * 42 0 * * * * * * 2373 0 0 G 43 * * * * * 0 * * * * * * * * * * * * * * 43 0 * * * * * * 2373 0 0 R 44 * * * * * * * * * 3128 3228 * * 4043 798 4013 3622 * * * 44 0 * * * * * * 2373 0 0 A 45 946 2438 * * * * * 4344 * * * * * * * 4407 * 2323 * * 45 0 * * * * * * 2373 0 0 D 46 * * 376 4013 * * * * * * * 4043 * 3228 * * * * * * 46 0 * * * * * * 2373 0 0 G 47 * * * * * 0 * * * * * * * * * * * * * * 47 0 * * * * * * 2373 0 0 Y 48 * 3906 * * * * 3228 * * * * * * * * * * * * 275 48 0 * * * * * * 2373 0 0 I 49 * * * * * * * 740 * 3906 3951 * * * * * * 1888 * * 49 0 * * * * * * 2373 0 0 L 50 * * * * * * * * * 175 * * * * * * * 3128 * * 50 0 * * * * * * 2373 0 0 E 51 * * * 163 * * * * * * * * * 3228 * * * * * * 51 0 * * * * * * 2373 0 0 G 52 * * * * * 0 * * * * * * * * * * * * * * 52 0 * * * * * * 2373 0 0 K 53 * * 3171 2756 * * * * 1122 3091 * * 3565 3652 * * * * * * 53 0 * * * * * * 2365 0 0 E 54 * * * 102 * * * * * * * * * * * * * 3872 * * 54 0 * * * * * * 2365 0 0 L 55 * * * * * * * * * 0 * * * * * * * * * * 55 0 * * * * * * 2365 0 0 E 56 3751 * 1598 1617 * * * * 3171 3565 * 3761 * * * * * * * * 56 0 * * * * * * 2365 0 0 F 57 * * * * 316 * * * * * * 3091 * * * * * * * 3652 57 0 * * * * * * 2365 0 0 Y 58 * * * * 3652 * * * * 3091 * * * * * * * * * 316 58 0 * * * * * * 2365 0 0 M 59 3171 * * * * * * * * 1687 3443 3872 * 2655 3761 3873 * 3091 * * 59 0 * * * * * * 2365 0 0 K 60 * * 3171 * * * * * 1172 * * 3091 * * 1941 * * * 3890 * 60 0 * * * * * * 2365 0 0 K 61 3751 * * * * * * * 231 * * * * * 3761 * * * * * 61 0 * * * * * * 2365 0 0 L 62 * * * * 3171 * * 700 * 2928 3761 3872 * * * * * * * * 62 0 * * * * * * 2365 0 0 Q 63 3565 * 3761 * * * * * 1508 * * 3171 * 2544 2842 3873 * * * * 63 0 * * * * * * 2365 0 0 R 64 2779 * 3523 * * * * * 1132 * * * 2448 * 4036 3902 * * * * 64 0 * * * * * * 2284 0 0 K 65 * * * * * * * * 375 * * * * 3570 3989 3611 * * * * 65 0 * * * * * * 2284 0 0 K 66 * * * * * * * * 0 * * * * * * * * * * * 66 0 * * 0 * * * 1974 0 0 //