HHsearch 1.5 NAME c3j47U_ FAM FILE c3j47U_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j47U_.a3m DATE Sat Aug 31 08:28:33 2013 LENG 91 match states, 91 columns in multiple alignment FILT 24 out of 28 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.4 EVD 0.4743 1.2535 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC >sa_dssp EEEEEEEEEDEDEEDCEEEDDEDEEEEEEEEECEDDEEEEEEEEDEEEDEEDDEEEEEDEEDDDDEEDDEEEDEDDDEEDEEEDEEDEEEE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 9167889999999999999999999999999999999728899999999631589999999999999999999985399777988985239 >Consensus xrixxkxxsLkxLxxkLxeixxYLxxVnhxIixxLQdIfNLxelxxafxvkxNDxxlxIYlssliRsViAlHdLIxNkxxNxxxxexxxkx >c3j47U_ IRLTNQLKSLKGLQSKLKDVVEYLDKVIHTILGKLQDVFNLNNLQKALTVKTNDELMVIYISNLVRSIIAFDDLIENKIQNKKIQEQRVKD >UniRef50_D2VRX4(216-314:343) Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VRX4_NAEGR E=7e-09 s/c=0.62 id=40% cov=96% --VSNRMTSLKALRGRLSEVNTYLSQVStgkmpvnHNILYLLQDVFNLlpglhtTDTKQSLVKKTNDTYLAMYLGSVIRCIVSLHDLINNKIEMREIEAK Q--- >UniRef50_C4Q4F9(207-306:360) 26S proteasome non-ATPase regulatory subunit 7 (M67 family) n=3 Tax=Schistosoma RepID=C4Q4F9_SCHMA E=7e-22 s/c=1.04 id=42% cov=93% -RIGCQLDGLSGLLRQLYEIREYLQlvssdklPVNHRIIYQLQDIFNllpdlkLHDTVRAIHVNTNDQMLVIYVAAIMRAILALHDLISNKLTNRETE-- ---- >UniRef50_Q5CYC3(206-307:313) 26S proteasome regulatory subunit, inactive JAB domain protein n=2 Tax=Cryptosporidium RepID=Q5CYC3_CRYPV E=6e-19 s/c=0.93 id=32% cov=99% -QISDTINSCKILVSKLKESKNYLNDIvegrippNHSIISVLQDIFNLlpdlrePEAIYAFSNRYADMILTIYGMSCLRSVLSMNDLVNNVSENRTAFEA SMK- >UniRef50_Q8I323(201-300:338) 26S proteasome regulatory subunit, putative n=6 Tax=Plasmodium RepID=Q8I323_PLAF7 E=4e-18 s/c=0.92 id=42% cov=97% -KVGDKLSSLKSLIAKLYEISAYLNDILNgniemniKILYNLQNVFSLlpdienVDLVQAFMVKNNDLMLNIYIGSITRSVIALHNLINNKIENKLNSEK K--- >UniRef50_A2DP46(195-283:311) Clan MP, family M67, Poh1-like metallopeptidase n=2 Tax=Trichomonas vaginalis RepID=A2DP46_TRIVA E=3e-15 s/c=0.93 id=35% cov=85% --LTNSIHGLAALEHRLRAISQYLGDVIdgklqidNEILGVIQSIFNllpnfeLKETVDSLNTKADDATFMIFISQLCRSVVSLHELVNGR--------- ---- >UniRef50_B8C5E9(222-324:352) 26S proteasome regulatory subunit 8 n=1 Tax=Thalassiosira pseudonana RepID=B8C5E9_THAPS E=2e-14 s/c=0.78 id=36% cov=99% --VKAKMSGLSTLTEKLVEMKDYLTAVsegrmkpNSEIIANMQAIVNLlpnlnvEELVRSMLVKNNDMHMVIYLSALIRCVIALHDLVLNKIAyNHETGE GSLEE >UniRef50_B0EI82(200-283:315) 26S proteasome regulatory subunit 7, psd7, putative n=2 Tax=Entamoeba RepID=B0EI82_ENTDI E=2e-13 s/c=0.91 id=39% cov=81% -----KMDSLRALDDKIKLMRNYLElvesgkiPVNQKIIQNIQDIFNLSpnieKYTQQFAVNINDVMVTIYLSQLVKSVLAVHDLIRNK----------- -- >UniRef50_Q5KQ60(210-312:350) Proteasome regulatory subunit 12, putative n=4 Tax=Basidiomycota RepID=Q5KQ60_CRYNE E=3e-21 s/c=0.99 id=38% cov=99% -RVASQLQSLRGLHARLHEIGEYLEAVrsgkmpiNHQVVYQLQEIIGLlpqlggdVELGKAFRMGVNDQSLVVFLSSMIRTVLALHDLIENRIQNAQQDI EDAK- >UniRef50_Q4CYA6(273-375:406) Proteasome regulatory non-ATPase subunit 8, putative n=8 Tax=Trypanosomatidae RepID=Q4CYA6_TRYCR E=2e-12 s/c=0.71 id=26% cov=99% -QIQERELSLAHLSCVLQSIEDYLQDVAeglmpisEDVLSVLQELISLQphiyHLKRSteMIRHSNDQAIAMFIAAIGRCVGALYDVIANRRRiNSEMVE VRAR- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * I 1 * * * * * * * 1000 * 1000 * * * * * * * * * * 1 0 * * * * * * 1299 0 0 R 2 * * * * * * * * 3074 * * * * 1444 961 * * * * * 2 0 * * * * * * 3192 0 0 L 3 * * * * * * * 1146 * 2640 * * * * * * * 1367 * * 3 0 * * * * * * 3440 0 0 T 4 2514 * 4358 * * 3634 * * 4276 * * * * 2509 * 2593 1725 * * * 4 0 * * * * * * 3440 0 0 N 5 3727 4646 1845 2741 * 4421 * * * * * 1938 * 3314 * 4372 * * * * 5 0 * * * * * * 3489 0 0 Q 6 * * * * * * * * 1297 * * * * 1912 3098 3898 2801 * * * 6 0 * * * * * * 3517 0 0 L 7 * * * 3763 * * 4727 1962 4683 1525 2527 * * * * * * 3794 * * 7 0 * * * * * * 3517 0 0 K 8 * * 2917 * * * 3388 3492 4798 3092 4510 2718 * 3565 5003 3063 3340 * * * 8 0 * * * * * * 3517 0 0 S 9 2678 * * * * 1653 * * * * * * * * * 928 * * * * 9 0 * * * * * * 3517 0 0 L 10 * 3241 * * * * * * * 246 * * * * * * * 4286 * * 10 0 * * * * * * 3517 0 0 K 11 2829 * * * * * * * 1038 4727 * * * 3203 2800 3600 * * * * 11 0 * * * * * * 3517 0 0 G 12 2616 * * * * 1285 3151 4163 * 4660 4324 * * * * 3031 4433 * * * 12 0 * * * * * * 3517 0 0 L 13 * * * * * * * * * 76 4286 * * * * * * * * * 13 0 * * * * * * 3517 0 0 Q 14 * * 3716 3328 * * 3112 3020 * 3734 * 3649 * 3647 4536 3096 3456 3330 * * 14 0 * * * * * * 3517 0 0 S 15 3317 3766 4212 3498 * 3034 3105 * 4268 4593 * * * 4785 3908 2247 4703 * * * 15 0 * * * * * * 3501 0 0 K 16 * * * * * * 4603 * 970 * * 4703 * 3673 2090 5447 * 3766 * * 16 0 * * * * * * 3501 0 0 L 17 * * * * * * * 2786 * 226 * * * * * * * * * * 17 0 * * * * * * 3501 0 0 K 18 3421 * * 4518 * 4785 4448 * 2800 3796 * * * 2380 2853 3450 * 3715 * 3896 18 0 * * * * * * 3501 0 0 D 19 3918 * 2632 1107 * * * * * 4212 * * * 3426 * 3093 4500 * * * 19 0 * * * * * * 3501 0 0 V 20 4500 * * * * * * 629 * * 2871 * * * * 4165 * 3097 * * 20 0 * * * * * * 3501 0 0 V 21 4785 * * 3093 * 3863 4603 * 2147 * * 4579 * 3091 2850 3343 * 3731 * 4677 21 0 * * * * * * 3501 0 0 E 22 3343 * 2650 2684 * * 4703 * 3509 4332 * 2776 * 2826 4973 4323 4579 * * * 22 0 * * * * * * 3501 0 0 Y 23 * * * * * * * * * * * * * * * * * * * 0 23 0 * * * * * * 3501 0 0 L 24 * * * * 4332 * * * * 123 4973 * * * * * * * * * 24 0 * * * * * * 3501 0 0 D 25 * * 3009 2971 * 3918 4518 * 3647 * * 2860 * 1822 * 4579 3377 * * * 25 352 2206 * 2807 222 * * 3501 2115 0 K 26 3472 * 1473 * * 4593 * * 2035 4045 4603 * 3052 4579 * * * * * * 26 64 4518 * 2807 222 * * 3501 1000 0 V 27 4677 * * * * * * 2860 * * * * 4268 * * * * 375 * * 27 654 1456 * 2807 222 * * 3501 2739 0 I 28 3151 4703 * * * * * 3321 * 3601 * 679 * * * 4579 * * * * 28 454 1889 * 2807 222 * * 3501 2457 0 H 29 * * * 3766 * * 855 * * * * 2861 4593 3240 * 4496 4500 * * * 29 107 3807 * 2807 222 * * 3501 1334 0 T 30 3451 * 3766 2260 * * 4518 * 3534 4268 * 2542 * 3159 4846 4165 3833 * * * 30 0 * * * * * * 3501 0 0 I 31 * * * * * * * 257 * * * * * * * * * 2617 * * 31 0 * * * * * * 3501 0 0 L 32 * * * * * * * 1321 * 1489 3157 * * * * * * 2927 * * 32 0 * * * * * * 3501 0 0 G 33 4496 * 4500 * * 1962 * * * * * 4268 * 4212 * 2483 * * * 1434 33 0 * * * * * * 3501 0 0 K 34 * * * * * * 3913 * 3833 2604 4593 2104 * 3206 * * 4677 2355 * 3608 34 0 * * * * * * 3501 0 0 L 35 * * * * * * * 2067 * 571 4496 * * * * * * 4518 * * 35 0 * * * * * * 3501 0 0 Q 36 * * * * * * * * * * * * * 0 * * * * * * 36 0 * * * * * * 3501 0 0 D 37 4496 * 942 1966 * * * * * * * 3865 * * * 3918 4500 * * * 37 0 * * * * * * 3501 0 0 V 38 * * * * * * * 721 * 3766 * * * * * 4973 * 1796 * * 38 65 4500 * 2585 263 * * 3501 1000 0 F 39 * * * * 697 * * 2664 * 2464 * * * * * * * 4496 * * 39 109 3776 * 1651 553 * * 3501 1438 0 N 40 * * * * * 4448 * * * * * 237 * * * 3239 * * * * 40 287 2469 * 2197 355 * * 3501 2097 0 L 41 * * * * * * * * * 65 * * * * * * 4500 * * * 41 1123 887 * 3090 180 * * 3501 2982 0 N 42 * * 4593 3715 * * 3815 * 3918 * * 3404 1859 3303 4332 3625 3948 3677 * * 42 266 2568 * 2087 387 * * 3501 2090 0 N 43 4593 * 1890 1232 * * 3766 * 4212 * * 3543 * 4332 * * * * * * 43 0 * * * * * * 3501 0 0 L 44 4165 * * * 5170 * * 3647 * 958 * * * * * * 2808 4332 * 2950 44 77 4268 * 2322 322 * * 3501 1000 0 Q 45 3317 * * * * 4448 * 3398 2673 * * 5206 * 4883 * 3506 4212 1325 * * 45 0 * * * * * * 3501 0 0 K 46 * * 3918 2941 * * 3810 * 2323 * * * * 2473 2510 * 3691 4518 * 4165 46 0 * * * * * * 3501 0 0 A 47 869 * * * * * * * * * * * * 4212 * 1327 * * * * 47 110 3766 * 1000 1000 * * 3501 1000 0 L 48 * * * * 926 * * 4846 * 2817 2237 * * 4518 * * * 4603 * * 48 0 * * * * * * 3501 0 0 T 49 3009 * * * * * 4846 2651 * 4496 4949 3187 * * 3389 2564 2633 4579 * 5170 49 0 * * * * * * 3501 0 0 V 50 * 4332 * * * * * 2937 4579 5170 4448 3367 * * 3766 * 3082 1266 * * 50 0 * * * * * * 3501 0 0 K 51 * * * 4332 * 4448 3766 * 1050 * * 2942 * 3045 4165 * 4603 * * * 51 0 * * * * * * 3501 0 0 T 52 3248 * * * * * * 4212 * * 4593 2582 * * * 3766 1295 4448 * 3246 52 0 * * * * * * 3501 0 0 N 53 3246 * 3918 * * * * * * * * 345 * * * 4603 * * * * 53 0 * * * * * * 3501 0 0 D 54 * * 0 * * * * * * * * * * * * * * * * * 54 0 * * * * * * 3501 0 0 E 55 3918 * * 3833 * * * 4332 * 4949 2334 4268 * 1659 * * 2637 4212 * * 55 0 * * * * * * 3501 0 0 L 56 3766 * * * * * 3498 4165 * 2228 1421 * * * * 3519 3918 * * 4579 56 0 * * * * * * 3501 0 0 M 57 * * * * 3918 * * 3766 * 1036 1986 * * * * 4703 * 3613 * * 57 0 * * * * * * 3501 0 0 V 58 1994 4518 * * * * * 4785 * * 3918 3807 * * * * 2243 1643 * * 58 0 * * * * * * 3501 0 0 I 59 * * * * * * * 710 * 4677 3116 * * * * * * 2093 * * 59 0 * * * * * * 3501 0 0 Y 60 * * * * 2431 * * * * * * * * * * * * * * 296 60 0 * * * * * * 3501 0 0 I 61 * * * * * 3246 * 2046 * 801 4518 * * * * * * 4846 * * 61 0 * * * * * * 3501 0 0 S 62 1630 * * * * 2334 * * * * 4165 * * * * 1242 * * * * 62 0 * * * * * * 3501 0 0 N 63 2712 * * * * * * * * * 4785 4883 * 3058 * 606 * * * * 63 0 * * * * * * 3501 0 0 L 64 * 3246 * * * * * 2457 * 982 2996 * * * * * * 3627 * * 64 0 * * * * * * 3501 0 0 V 65 * 3918 * * * 3766 * 1368 * 3363 3528 * * * * * 4949 1963 * * 65 0 * * * * * * 3501 0 0 R 66 * * * * * * * * 4212 * * * * * 80 * * * * * 66 0 * * * * * * 3501 0 0 S 67 2296 2647 * * * * * * * * * * * * * 759 4448 * * * 67 0 * * * * * * 3501 0 0 I 68 * * * * * * * 1606 * * * * * * * * 4603 666 * * 68 0 * * * * * * 3501 0 0 I 69 * * * * * 3766 * 1537 * 1642 * * * * * * 4321 2243 * * 69 0 * * * * * * 3501 0 0 A 70 258 * * * * * * * * * * * * * * 2610 * * * * 70 0 * * * * * * 3501 0 0 F 71 * * * * 3057 * * * * 478 4165 * * * * * * 4212 * 4268 71 0 * * * * * * 3501 0 0 D 72 * * 4883 * * * 257 * * * * 4165 * * * * * * * 3766 72 0 * * * * * * 3501 0 0 D 73 * * 872 3918 * * * * * * * 1367 * * * * * * * * 73 0 * * * * * * 3501 0 0 L 74 * * * * * * * * * 110 * * * * * * * 3766 * * 74 0 * * * * * * 3501 0 0 I 75 * * * * * * * 341 * * * * * * * * * 2248 * * 75 0 * * * * * * 3501 0 0 E 76 3766 * 3555 2591 * * * 4703 * 4496 * 1138 * * 4212 3566 * * * * 76 0 * * * * * * 3501 0 0 N 77 * * * * * 3918 * * * * * 99 * * * * * * * * 77 0 * * * * * * 3501 0 0 K 78 * * * * * * * * 700 4332 4593 * * 4268 2431 * * 4165 * * 78 0 * * * * * * 3501 0 0 I 79 3127 * * * * * * 1376 * 2601 * * * * 3579 3986 3447 4421 * 4315 79 0 * * * * * * 3343 0 0 Q 80 2903 * * 1326 * * * * * 5067 * * * 1935 2910 * 4538 * * * 80 354 2706 3960 0 * * * 3343 1619 0 N 81 * * * * * * * * * * 4035 91 * * * * * * * * 81 0 * * * * * 0 3216 0 1000 K 82 4037 * * * * * 3872 * 1472 4064 * * * * 1492 3394 * * * * 82 0 * * * * * 0 3216 0 1000 K 83 * * 4349 1136 * * * * 3195 4228 * * * 3120 3002 * 3420 * * * 83 0 * * * * * 0 3214 0 1000 I 84 1937 * * * * * 3269 2442 * 4198 3324 4228 * 3120 * * 2962 * * * 84 0 * * * * 0 * 3214 0 1000 Q 85 * * 3785 1743 3449 3775 * * * * * 4141 * 2440 * 3082 * 3250 * * 85 0 * * * * * * 3263 0 0 E 86 3617 * * 653 * * * 3600 2322 * * * * * * * * * * * 86 0 * * * * * * 3216 0 0 Q 87 2706 * * 2214 * 3604 * * 1698 * * * * 3997 * 3960 * 3133 * * 87 0 * * * * * * 3216 0 0 R 88 * * 3209 3735 * * * * 1894 * * * * 3256 2171 2178 * * * * 88 0 * * * * * * 3117 0 0 V 89 1184 * * * * * * * * 2829 2643 * * * * * * 1949 * * 89 0 * * * * * * 2904 0 0 K 90 * * * 2829 * * * * 824 * * * * 3086 2499 * * * * * 90 0 * * * * * * 2904 0 0 D 91 * * 1000 1000 * * * * * * * * * * * * * * * * 91 0 * * 0 * * * 1559 0 0 //