HHsearch 1.5 NAME c3j3vU_ FAM FILE c3j3vU_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j3vU_.a3m DATE Sat Jun 15 08:34:03 2013 LENG 103 match states, 103 columns in multiple alignment FILT 110 out of 195 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.9 EVD 0.4377 0.2359 SEQ >ss_dssp CCSCSSCCEESSSSCCCCCCCCCCCCSSCSCCCCCCCCCCCCSCCTTTCCCCCCSCCCCCCCCCEESSTTSCSCCCCCSCCCCSSSCCCCCCSSSCCCSS TTC >sa_dssp BDBCCBCABAEECEDDDCECBEEEECEEEDBCAEABBEDDDDEECEEEDEEEDDDDCEDCECEECCCADECEEEDDEDEDDDDEEECDEABBCEDEAACC ECE >ss_pred CCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCEEEEEEECCCCCCCCCCEEEEECCCCHHHEEEECCCCCCEEEEEEEEECCEEEEEEECCCCC CCC >ss_conf 9302396999996688884579999964798799965307565645888887665778410203645686314678700789999999799998024662 689 >Consensus xxIkkGDxVxVixGxdKGKxGxVlxVxxxxxxViVeGvNxxkkhxKpxxxxxxGgixxxExPIhxSnVxlvdxxxxkxtrvxxxxxxgxkvRvxkksgxx Ipk >c3j3vU_ MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKHSKPTQANPQGGISNQEAPIHVSNVMPLDPKTGEVTRVGYKVEDGKKVRVAKKSGQV LDK >UniRef50_A8NWS8(110-213:277) KOW motif family protein n=1 Tax=Brugia malayi RepID=A8NWS8_BRUMA E=2e-12 s/c=0.71 id=28% cov=93% --IFPGDLVQVMIGKDKGKTGVVSRVNKETNAIFVKG-----RHTKLINDSENFSdmdplYRQIEQPLYVHKgqVKLIDPSDNEPCEAAWVLneEGNEYI RISKKSKFQIP- >UniRef50_B7PHM8(86-188:251) Ribosomal protein L24, putative n=1 Tax=Ixodes scapularis RepID=B7PHM8_IXOSC E=2e-18 s/c=0.90 id=31% cov=98% --VFRGDRVEVLVGRDKGKQGIVNYIVKERNWVVVEGLNCVRGSHRVSERREfSVPSEIKNRPCNLWSTLPVASQSeNKPTKVEWRyTEEGKKVRVSVRT GRILP- >UniRef50_Q6ME52(10-92:116) 50S ribosomal protein L24 n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=RL24_PARUW E=2e-11 s/c=0.84 id=35% cov=82% -KIRQGDTVVAIAGNSRGQIGTVQSC--KGDRVIVQGLNVRKKHVKRSQEAPKGRIVEIERPIHISNLK-VCVEGETTAKLKVRTNE------------- --- >UniRef50_Q4Q9S7(138-240:476) Putative uncharacterized protein n=6 Tax=Trypanosomatidae RepID=Q4Q9S7_LEIMA E=2e-09 s/c=0.62 id=30% cov=94% -----GDTVEVVSGEGAGQRGAIIAVVKYKNEILVQNVNVQDVVIPASETRPE-QVVQREHPISVLRVRHVDPSTNQLCHLEIVKVRNKETgeleerRIS LESGALLP- >UniRef50_C4JJX1(100-190:358) Putative uncharacterized protein n=1 Tax=Uncinocarpus reesii 1704 RepID=C4JJX1_UNCRE E=1e-09 s/c=0.70 id=29% cov=83% ITIAAGDRVCLVRGADKGKIGKVLNVDSETETVAVEGINIYDVEFPRfalSGDTDKRPFRPYPVPVPISDVRLVvpleDPSTGIVKDVVVK--------- ---------- >UniRef50_A9V5A4(27-129:183) Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V5A4_MONBE E=1e-20 s/c=0.97 id=33% cov=99% -KIVTGDIVQVIQGPktEIGKSGKVLRVDRKQNRLYIEGVLEHTRRIR-NEETNQTALVQSPAPVHYSNVALLDPKDGLPCKVKTQVIDGERVRYSTRTL SKIPK >UniRef50_Q1D764(3-111:111) 50S ribosomal protein L24 n=2 Tax=Cystobacterineae RepID=RL24_MYXXD E=2e-18 s/c=0.86 id=36% cov=99% -KLKVGDTIQVMAGAEASeknpatKRGKVLKIDREAERVTVEGLRLVKRHMKKTPQSPEGGIVEKPGTIALANVQVVCAKCDKPTRVGIRTegEEGKKKR FCKNCDALID- >UniRef50_UPI0001924F6C(64-163:266) PREDICTED: similar to mitochondrial ribosomal protein L24 n=1 Tax=Hydra magnipapillata RepID=UPI0001924F6C E=4e-18 s/c=0.92 id=33% cov=97% --IVRNDLVEICCGEDTGKQGKVRAVAPEKNLLKVVGLNCSRQFL-PDIGNGNPGYVLSEEPLHFYEVKLVNPHTGRGTDIVLRYDElGEKVRVCKETGH VIP- >UniRef50_A8MB21(46-128:143) 50S ribosomal protein L24P n=4 Tax=Thermoprotei RepID=RL24_CALMQ E=3e-06 s/c=0.64 id=29% cov=80% --VRVGDTVLILRGDFKGTRGKVTRVDYKRVRIYVD----SASFKKPSGEAVY-------YPIHPSKVVIVELDQSDKARVA-AIDKTRKAREAK----- --- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * 3757 * * 2190 * 1850 1219 * * * * * * * * * 1 0 * * * * * * 3865 0 0 H 2 * * * 6199 * * 2283 * 1239 * * 3049 5912 * 2638 6180 4461 * * * 2 0 * * * * * * 4563 0 0 V 3 * * * * 4049 * * 701 * 2925 * * * * * * * 2376 * * 3 0 * * * * * * 4810 0 0 K 4 5127 6113 * * 3137 * 6526 4717 1271 5650 6486 * * 5671 2249 * 6322 3485 * 5870 4 0 * * * * * * 4828 0 0 K 5 4702 * * * * * * 5653 1102 * * * 4528 5200 2273 4787 3410 3876 * * 5 0 * * * * * * 4881 0 0 G 6 * * 4170 6022 * 326 * * 5674 * * 3165 * * * * * * * * 6 0 * * * * * * 4951 0 0 D 7 5670 * 74 5713 * * * * * * * * * 6459 * * * * * * 7 0 * * * * * * 4951 0 0 K 8 * * 6680 3727 * * 7175 4851 2473 2787 6016 5143 7275 4725 2785 4762 2054 5798 * 5693 8 0 * * * * * * 4951 0 0 V 9 * * * * * * * 4795 * * * * * * * * * 53 * * 9 0 * * * * * * 4951 0 0 M 10 5263 5005 * 2807 6024 * * 3049 2816 3894 4651 * * 2282 5576 * * 2797 * 4501 10 0 * * * * * * 4951 0 0 V 11 5869 * * * * * * 1798 * 4765 * * * * * * * 603 * * 11 0 * * * * * * 4951 0 0 I 12 * 5696 * * 6605 * 5693 1191 * 1841 4047 6048 * * 6115 * 4106 3541 * * 12 0 * * * * * * 4951 0 0 S 13 2231 5688 * * * 6852 5714 6451 4018 * * * * 4355 3587 1684 2647 3971 * * 13 26 5805 * 0 * * * 4996 1000 0 G 14 * * * * * 27 * * * * * * * * 5762 * * * * * 14 0 * * * * * * 4996 0 0 K 15 3754 * 3930 4411 * 6594 * * 1348 * * 3541 3174 5714 3122 3764 * 7415 * * 15 23 5976 * 2750 232 * * 4996 1515 0 D 16 6581 * 695 3444 4553 5524 4053 * 7441 5678 * 4251 * * * 5452 * * * 4197 16 46 5000 * 1532 612 * * 4996 1779 0 K 17 3835 * * 5714 5805 * * 5308 473 * * * * 7249 3448 6473 5688 * * 5762 17 9 7291 * 1000 1000 * * 4996 1000 0 G 18 * * * * 6637 147 * * 6614 * * 5611 * * 5714 5337 6339 * * * 18 56 5183 6594 2727 236 * * 4996 1830 0 K 19 5569 * 6475 4462 * 6570 4803 5315 561 * * * * 4204 4183 * 4351 6931 * 7234 19 0 * * * * 0 * 4948 0 1000 Q 20 6866 * * 3832 6581 * * 2589 4716 5580 6670 * * 2336 3037 4340 2453 3260 5678 * 20 16 6525 * 0 * * * 4996 1000 0 G 21 4408 * * * * 177 * * * * * 6324 * * 6525 4889 6467 * * * 21 0 * * * * * * 4996 0 0 T 22 4512 * 6264 3066 * * * 3495 1615 4102 * * 6691 5226 3663 * 2996 3448 * 5805 22 0 * * * * * * 4996 0 0 I 23 * * * * * * * 1932 * * * * * * * * * 438 * * 23 0 * * * * * * 4996 0 0 L 24 6650 * 7055 5946 * 6158 * 2638 3563 1242 5754 4718 * 5546 4721 4120 4227 4288 * 7318 24 0 * * * * * * 4996 0 0 A 25 2867 * 5173 3229 6851 6263 6158 * 2133 * 6852 5764 * 3399 2703 3059 6136 * * 4179 25 12 * 6931 * * * * 4996 0 0 A 26 5717 4995 * * * * * 2184 * 4551 * * * * 5898 7024 4051 732 * * 26 33 * 5455 * * 0 * 4979 0 1000 F 27 5671 * 2467 * 3280 * 6675 2569 * 2329 6528 2999 * * 5750 4955 6728 3486 * 4885 27 48 6716 5442 2585 263 * 0 4983 1000 1733 P 28 4473 * 7103 5459 7215 * 5100 * 2217 7423 * 6047 2217 4436 1874 5159 4603 5319 * 5338 28 10 * 7127 * * 1008 992 4995 0 2384 K 29 5131 * 2991 2168 6639 4927 7183 5999 1810 6748 6305 4999 * 4512 4062 3973 * * * 4269 29 0 * * * * 0 * 4991 0 2097 K 30 5112 * 4049 3875 * 3642 * * 2082 5484 * 3932 * 4544 2744 3504 2827 6924 * 6827 30 0 * * * * * * 4958 0 0 D 31 7077 * 3297 3815 * 3340 4889 * 5814 * 5372 1332 * 3275 5147 3813 * 5797 * 5176 31 53 4806 * 1745 511 * * 4958 2049 0 R 32 5044 * 6155 4608 6692 4506 5511 6282 2305 4525 4962 6734 * 4568 1912 4658 3225 * 3733 6773 32 0 * * * * * * 4958 0 0 V 33 3356 * * * * * * 2784 * 3090 * * * * * * * 668 * 6572 33 0 * * * * * * 4958 0 0 L 34 5404 5169 * 7241 5224 * * 1593 4192 2924 * * * 5760 5941 5163 3797 2520 6751 3663 34 0 * * * * * * 4958 0 0 V 35 * * * * * * * 3455 * 4531 * * * * * * * 208 * * 35 0 * * * * * * 4958 0 0 E 36 4985 * 3390 990 * 5716 * * 2555 * * * * 3778 5866 4764 5304 5140 * * 36 35 6050 6821 2322 322 * * 4958 1000 0 G 37 6996 * 3642 5495 * 486 5941 * 4783 * * 3146 * * * 6632 * * * * 37 38 * 5270 * * * 0 4965 0 1000 V 38 5867 4229 * * * 7300 * 2196 6953 2168 6197 * * * 5096 * * 1212 * * 38 14 * 6663 * * * 0 4946 0 1958 N 39 5799 * * 6042 * 5434 * * 4426 6477 5973 263 * * 5946 6985 6286 * * * 39 16 * 6518 * * 913 1092 4943 0 2410 M 40 * 3594 * 5384 * * * 2582 4783 2523 2459 * * 5146 4300 7300 4979 2315 * 5961 40 24 * 5942 * * 619 1520 4896 0 2059 V 41 4576 6652 * 5144 * 5362 3648 3428 2987 6690 * * * 4193 2769 4466 7219 1675 * 5610 41 0 * * * * * 0 4889 0 1497 K 42 5642 * 4887 * 5406 * 5225 4802 1148 * * 6406 5771 6212 3527 5661 2452 5218 6706 4669 42 22 * 6068 * * 1000 1000 4840 0 1497 K 43 * * 5988 6455 5914 5613 5924 6728 1050 6467 * 6940 * 4726 1903 5406 5754 4254 * 6973 43 31 * 5534 * * * 0 4956 0 1483 H 44 4921 * * 4742 3924 * 779 5690 4845 5283 * 5021 * * 5268 4693 6084 4676 * 4271 44 34 * 5406 * * 1807 485 4958 0 2263 S 45 6450 * 6654 5972 4910 6047 4911 2641 4585 5157 4171 6525 * 3757 4232 5849 3566 1577 5608 * 45 104 5659 4324 2322 322 1194 829 4940 1000 2571 K 46 * * * 6012 * 4745 * * 579 * * 4973 4396 * 2331 * * * * * 46 74 5774 4973 1489 635 1379 700 4881 1545 2707 P 47 2870 * 5262 * * 4476 * 5886 3603 6145 * 5676 1082 5884 3371 5168 5697 5247 * * 47 125 3840 6267 831 1192 1621 567 5048 2690 2931 T 48 * * 3845 * * 4699 5111 4750 4894 * 4664 3086 * 4885 4663 1785 2062 6371 5653 * 48 74 6933 4570 0 * 1447 659 4994 1000 2639 Q 49 4710 * 5650 3445 * 3685 * 4907 3412 6285 * 4452 2954 1704 4071 * 4031 * * 5061 49 67 4759 6912 1400 687 655 1454 4988 2142 3001 A 50 3894 * 3350 2168 * 3122 * 6128 2344 6149 5476 5832 5229 3970 4876 4393 4064 * * * 50 36 * 5360 * * 938 1064 5026 0 2150 N 51 4840 * 3281 4553 * 3006 5951 * 4304 * * 1689 6096 5389 3318 3672 3930 5825 * 5824 51 42 * 5119 * * 661 1444 5088 0 2440 P 52 6785 * 4880 2279 6265 4469 5334 5750 5086 * * 3900 1826 3491 4013 4595 4821 5089 * 6176 52 137 4220 4759 216 2846 0 * 4987 2357 2349 Q 53 5011 * 4005 2518 * 6928 5249 6659 2482 5282 6351 3986 5995 2383 6114 3375 4685 5467 * 5159 53 65 7186 4749 0 * 0 * 4954 1000 1863 G 54 5090 6018 5039 * 5334 454 * * * 6077 * 6491 4722 * 5609 4533 5500 5626 * * 54 34 6436 6425 0 * 1410 681 4937 1000 2135 G 55 5533 * * 4925 6212 951 * 5755 4598 * 4431 6521 4098 3828 4576 3705 4554 * * 7037 55 18 6339 * 2322 322 1376 702 4943 1000 1811 I 56 5775 * * * 3557 * * 1069 6531 2786 6198 * * * 4042 4808 4986 3452 * 5005 56 0 * * * * 977 1023 4955 0 1317 S 57 5918 * 5320 3911 4912 * 6708 2123 3471 3249 * * * 4944 4977 6476 5141 1771 * 5198 57 0 * * * * * 0 4969 0 1000 N 58 5527 * 3657 2262 * * * 5206 2965 5196 4643 4793 4249 3495 4357 3417 3050 5979 * 6420 58 21 6109 * 2000 415 * 0 4969 1000 1000 Q 59 * * * * 4069 * * 2425 2049 5447 4695 * * 2962 3155 3453 4917 3913 * 5676 59 0 * * * * * 0 4969 0 1000 E 60 5181 * * 376 * * 6135 * * * * 4819 3103 * * 5330 6513 * * * 60 0 * * * * 0 * 4969 0 1000 A 61 1474 * 6126 5770 4418 3589 4921 6004 3639 5054 3810 6588 * 4792 3949 4758 6669 4147 * 4927 61 0 * * * * * * 5003 0 0 P 62 5105 * * 5739 5353 5224 * * 5507 6272 * * 419 * * 3440 5259 * * * 62 0 * * * * * * 5003 0 0 I 63 * 5707 * * 6415 * * 824 * 1949 4555 * * * * * * 3282 * * 63 0 * * * * * * 5003 0 0 H 64 3845 6126 3680 6292 5921 * 890 * * 4623 * 3668 4331 6872 5297 4394 * * * 5728 64 0 * * * * * * 5003 0 0 V 65 3444 5259 * * 5770 * 6292 1839 * 3331 6860 * 5435 * 5567 4718 * 1985 * 2959 65 44 5064 * 0 * * * 5003 1374 0 S 66 4374 5504 * * * * 5328 * 6309 6129 * * * * 6205 306 5810 * 5707 5770 66 0 * * * * * * 5003 0 0 N 67 * * 4964 3680 * * * * 2562 * * 649 * 5177 6129 4608 * * * * 67 66 4480 * 700 1379 * * 5003 1887 0 V 68 * * * * * * * 3652 * 3198 * * * * * * 5747 335 * * 68 12 * 6952 * * * * 5042 0 0 M 69 1758 * * * * * * * 3125 4182 2046 4237 * 3804 3947 4635 5200 4816 * * 69 46 6110 5861 0 * 0 * 4998 1000 1000 P 70 5941 * * * 4853 * 4698 3261 * 628 * * 4021 * * * * 4299 * 4411 70 27 * 5730 * * 0 * 5040 0 1579 L 71 6404 * * 6574 3477 7505 6903 2874 6363 2877 6822 * * 6558 * * * 1169 5844 3213 71 79 4535 6640 1867 462 1018 982 5104 2088 1457 D 72 4435 2304 930 5219 6434 * * * * 5986 * 3730 * * * 4354 5889 5003 * * 72 12 * 6911 * * 0 * 4986 0 1521 P 73 4084 * 4924 3815 * 5705 5541 * 3044 5986 7086 5070 1090 4834 * 3527 7014 5452 * * 73 33 6415 6532 4248 78 0 * 4983 1000 1000 K 74 3216 * 5280 3267 6398 5077 5117 6022 1684 * * 5294 * 4458 6415 2416 5109 3902 * * 74 44 6828 5539 1585 585 * 0 4978 1000 1000 T 75 3635 2579 2900 4747 * 5214 * 5438 4994 4520 * 3679 6137 4966 * 4393 2050 4978 * 6524 75 41 5148 * 0 * 896 1112 4921 1617 1648 G 76 5888 * 4103 3455 * 1563 5478 6839 2802 5949 * 2751 6614 4819 * 3831 5275 6144 * * 76 46 5595 6594 2373 309 * 0 4926 1533 1000 E 77 4857 * 5961 3936 5224 * 6403 4197 1157 4465 * * * 3496 3591 5575 4463 4074 * * 77 50 4867 * 2038 403 881 1130 4929 1799 1619 V 78 2606 * * * * 2890 6397 7088 5909 5794 * 6399 1311 5467 4651 3624 4847 4217 * * 78 12 6968 * 2322 322 * 0 4924 1000 1000 T 79 4297 3171 4355 6140 * * * 6818 5257 * 5912 * * * 6442 2778 1151 3108 * * 79 16 6469 * 1000 1000 * 0 4924 1000 1000 R 80 6362 * 3712 5132 * * 4799 5679 1626 * * * * * 1037 * 5945 * * * 80 26 5790 * 0 * * 0 4924 1000 1000 V 81 3827 5866 * * * * * 2123 * 3452 * * * * * 6000 4265 933 * * 81 15 * 6600 * * * 0 4914 0 1000 G 82 2946 * 6067 3298 * 1358 * 5902 2857 * * * * 6311 3511 5385 4819 4348 * * 82 25 * 5856 * * 911 1095 4914 0 1566 Y 83 * * * * 2352 * 4069 3196 4790 4137 * * * * 3229 5839 4774 3387 3000 2633 83 39 5225 * 0 * 0 * 4864 1876 1571 K 84 4327 * * 4956 5792 5514 6507 4591 1894 6782 6444 * * 4264 1438 4668 * 3727 * * 84 324 2312 * 53 4786 * * 4971 3565 0 V 85 * * * 6606 2854 6592 * 2628 4342 2518 4651 * * 6897 6746 6334 2500 2698 6609 4494 85 402 2041 * 431 1954 * * 4928 4035 0 E 86 4024 * 2184 1388 * 6159 6609 4567 3254 5841 5625 5287 * 5057 6921 6631 7243 4418 * * 86 175 3130 * 1280 766 * * 4928 3211 0 D 87 4302 * 1342 2713 * 3403 * * 4043 6609 * 2746 * * 5783 4587 5154 * * * 87 91 4035 * 1047 955 * * 4928 2643 0 G 88 6498 * 4893 5563 * 574 * * 3855 * * 3133 * * * 4807 5288 5783 * * 88 42 5131 * 2338 318 * * 4925 1878 0 K 89 4737 * 4901 2385 6330 * * 5836 1616 * * 4497 * 4831 3068 4409 2882 * * * 89 20 6184 * 1555 600 * * 4925 1467 0 K 90 * 5629 * 5777 * 6595 * * 613 6592 * * 4539 5427 2791 6427 * 5256 6829 5081 90 0 * * * * * * 4925 0 0 V 91 4997 * * 3614 * * * 3495 4550 5541 * * * 5118 6583 4895 3880 779 * 6579 91 27 5772 * 2585 263 * * 4928 1000 0 R 92 * * * * * * * * * 4684 * * * * 57 * * * * * 92 0 * * * * * * 4928 0 0 V 93 5808 * * 5860 3718 * * 1963 6632 4700 5569 * * * 5704 * 4944 1361 * 3037 93 0 * * * * * * 4900 0 0 A 94 2608 2222 * * 4194 6215 * * * 3815 4376 5883 5511 6147 * 1628 5691 6281 * 5287 94 0 * * * * * * 4900 0 0 K 95 6564 6695 * 6106 * * * 5210 770 4805 * * * * 2967 5897 4220 3089 * * 95 42 5133 * 1585 585 * * 4900 1635 0 K 96 4652 * 5700 4460 * * 6966 5530 1296 4330 * 4985 6381 5078 2309 3390 5815 6885 * 6326 96 0 * * * * * * 4854 0 0 S 97 5705 2375 4939 6302 * * * * * * * 4550 * * * 1488 1635 5537 * * 97 0 * * * * * * 4792 0 0 G 98 6177 * 3738 * * 545 * * 3966 6078 * 2883 * 6421 * * * * * * 98 0 * * * * * * 4757 0 0 Q 99 3452 5501 * 2043 5956 * 4617 * 2516 5977 * 4785 * 3819 4264 2971 4006 6039 * 4966 99 0 * * * * * * 4730 0 0 V 100 4863 * 5523 2680 6162 * * 2103 4507 3653 * 6217 5123 4567 6132 5113 3886 2168 * * 100 0 * * * * * * 4695 0 0 L 101 * * * * 5976 * * 486 * 2016 * * * * * * * 5436 * * 101 0 * * * * * * 4695 0 0 D 102 5462 * 1316 5349 * * * * * * * * 859 * * * * * * * 102 0 * * * * * * 4522 0 0 K 103 * * * 3385 * * * * 799 * * * * 4358 1833 * * * * * 103 0 * * 0 * * * 3521 0 0 //