HHsearch 1.5 NAME c3j3vT_ FAM FILE c3j3vT_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j3vT_.a3m DATE Sat Jun 15 08:32:42 2013 LENG 95 match states, 95 columns in multiple alignment FILT 107 out of 248 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.2 EVD 0.4533 0.9305 SEQ >ss_dssp CCCTTTTEEEECCSHHHHHHHTTTEEEEEECSCCCHHHHHHHHHHHTCCCCSCEEEEEECSSSSCCSSSCCSCCCEEEEEEECSSCSCCCTTTTC >sa_dssp EEBDEDBBCECCDDEDADDCCEEDCBAABADDDBDDECACCAADEEBDACADDCDDCDDDEECEDDEEEDEECEDCCBABBCAEECEDCDEDADE >ss_pred CCCHHHHHCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEECCCCC >ss_conf 98876854146138999978766909999878789899999999997693346899850884001267778479812999998899834033349 >Consensus mxdxxdiikxPixTEKsxxlxexnxyxFxVxxxatKxeIKxaiExxfxVkVxxVnTxxxxgKxkRxxxxxgxxxxxKKAiVtLxxxgxxIxxfex >c3j3vT_ MKDPRDVLKRPVITERSADLMTEKKYTFEVDVRANKTEVKDAVESIFGVKVDKVNIMNYKGKSKRVGRYTGMTSRRRKAIVKLTADSKEIEIFEA >UniRef50_Q2WGC1(7-90:99) 50S ribosomal protein L23, chloroplastic n=2 Tax=Selaginella RepID=RK23_SELUN E=2e-07 s/c=0.68 id=29% cov=87% ----------PVSTDKAIRLPERKQYSSNAEPNPSKTEVKRRIERFPRVRIVAINSHRLPAGAARgsAGSVTGRRVRRKRMITTLRLNH-PIPLF-- >UniRef50_Q5HS92(1-85:93) 50S ribosomal protein L23 n=50 Tax=Epsilonproteobacteria RepID=RL23_CAMJR E=2e-14 s/c=0.95 id=28% cov=91% MADITD-IKTILYTEKSLNLQEQGVVVIQTSPKMTKTGLKAVLKEYFGVTPKSINSLRMDGKIKRFRGRLGQRNNYKKFYVKLPEG--------- >UniRef50_B2X251(21-111:163) Ribosomal protein L23 n=3 Tax=Chlorophyta RepID=B2X251_9CHLO E=2e-19 s/c=1.06 id=29% cov=96% ----FDLIKSPVFNFKSYnMLSEKKQYTFDVDLRLTKPQIQSLFLQAFGVNVIEVNTLIPPRKKRKYTAIAGYKNRFKRVFLTLKED-QSIPYVDS >UniRef50_Q09727(31-91:161) Uncharacterized protein C31A2.08 n=1 Tax=Schizosaccharomyces pombe RepID=YA48_SCHPO E=0.0001 s/c=0.78 id=25% cov=64% --------------------------VFRVPLHVNKFDVRDYLQHVYNLKVVSVKSRIYQGKLFRNQLGQVKRPqSEKRVIVEMEEP--------- >UniRef50_B6KG93(241-319:326) Ribosomal protein L23a, putative n=13 Tax=Eukaryota RepID=B6KG93_TOXGO E=3e-19 s/c=1.21 id=29% cov=82% --DKYTIVRQPLTTESAMKKIEEtNTLVFLVDPRSNKRQIKQAVKELYDVDTQRVNTLIRP-------------DGLKKAYVRLTSDYDALDV--- >UniRef50_B6KBQ5(467-544:690) Ribosomal protein L23, putative n=3 Tax=Toxoplasma gondii RepID=B6KBQ5_TOXGO E=1e-09 s/c=0.82 id=26% cov=76% ---------------RTGAFLERRRVALKVPVNLTKFEIQSYLEKIYGARVLKVSTLIVVPRRRRdiFGPRPSMRyyrvgCTFKKAIVTLEDG------- -- >UniRef50_UPI000186E02B(44-107:155) mitochondrial 50S ribosomal protein L23, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E02B E=1e-05 s/c=0.80 id=17% cov=66% ------------------------QVLFQTSIQMTQYDIKNYLEKIYKIPVVEVKTTIKMGEIKKCfgRQHLIKDDDYKEALVTMPTD--------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * 4020 92 * * * * * * * * * 1 0 * * * * * * 3537 0 0 K 2 3615 * * * * * * 2115 1743 * * 2386 * * 3320 4399 4321 * * * 2 0 * * * * * * 3753 0 0 D 3 * * 903 4392 * * * * 4070 * * 2420 * 3774 * 4348 4350 * * * 3 0 * * * * * * 4316 0 0 P 4 3155 * * * 5573 * * 2289 4431 3253 * * 1761 * * 4288 5026 4181 * 3668 4 62 4565 * 1000 1000 * * 4494 1477 0 R 5 * 5925 5572 6019 2605 * 5953 4306 5542 * * 3699 * 4232 4440 3846 4352 * * 1323 5 0 * * * * * * 4723 0 0 D 6 6368 * 1048 3185 * * * * 3771 * * 3446 * 2961 6203 3737 6362 * * * 6 26 * 5812 * * * * 4964 0 0 V 7 * * * 5754 4617 5032 * 1500 4231 3044 * * * 4958 * * 4958 1709 * 6408 7 0 * * * * 0 * 5115 0 1000 L 8 * * * * 5711 * * 878 * 1516 * * * * * * * 3523 * * 8 0 * * * * * * 5107 0 0 K 9 6060 * 6333 6229 * 5844 6044 2460 1140 3229 * * * 4751 3999 * 6781 3720 * * 9 0 * * * * * * 5107 0 0 R 10 3260 5655 * 5416 5362 4854 3897 * 2367 * * 5859 5844 4407 3123 3035 4677 * * 2516 10 21 * 6083 * * * * 5107 0 0 P 11 4114 * * * 5897 5755 6249 4949 * 5858 * * 470 4537 * 5191 * 4274 * * 11 19 6263 * 1000 1000 * 0 5153 1000 1000 V 12 * * * * 6026 * 4347 1846 * 2287 5176 * * 5899 5748 5885 * 1601 * 4548 12 0 * * * * * 0 5153 0 1000 I 13 5702 * * * 3872 * 5955 2445 5737 1912 * * 6428 4757 6285 5544 3687 1987 * 6015 13 42 5115 * 0 * * 0 5153 2051 1000 T 14 6466 * * * * * * * * * * 4723 * * * 2494 371 * * * 14 12 6868 * 0 * * 0 5153 1000 1000 E 15 * * 2959 347 6092 5889 * * 5104 * * * 6263 6441 * * * * * * 15 0 * * * * 0 * 5153 0 1000 R 16 * * * 6585 * * * * 164 6469 * 6903 * * 4424 5008 * * * * 16 73 4807 6171 0 * * * 5215 2013 0 S 17 1863 * 6916 * * 5071 * 6483 * * 6598 6170 * * 6273 1250 2430 4929 * * 17 14 6731 * 0 * 0 * 5204 1000 1000 A 18 4184 5948 5489 5699 5305 5573 * 2779 6279 3955 3626 3563 * 6393 7059 4564 2146 3917 * 3344 18 87 4091 * 775 1267 * * 5215 2547 0 D 19 4028 * 3809 6236 5225 4765 * 5836 3061 4019 3063 3198 * 3446 3019 3788 5576 5386 5904 6176 19 0 * * * * * * 5215 0 0 L 20 4336 6966 6323 6283 5573 6112 6176 4383 3895 954 4261 4783 * 4130 6478 4447 * 5371 * 6695 20 10 7160 * 0 * * * 5215 1000 0 M 21 4412 * 6002 3978 * 4132 * 3307 4565 1971 3512 4816 5593 4548 3363 3653 5256 5105 * * 21 99 3917 * 2144 370 * * 5238 2899 0 T 22 4661 * 3242 874 * 4731 * * 3197 * * 5031 * 4723 4656 5261 5764 6676 * * 22 279 2509 * 0 * * * 5238 3827 0 E 23 5453 * 3882 3102 * * 4912 5575 2441 5205 5598 2737 6287 2747 4651 3152 5687 6685 * 6203 23 269 2555 * 112 3741 * * 5238 3726 0 K 24 * * * 5178 * 2876 * * 2904 * * 744 6306 * 3980 5086 * * * * 24 44 5056 * 2506 279 * * 5247 1934 0 K 25 6685 6185 * 5378 * * * 5582 1767 * * 6192 * 1908 3849 6363 2905 2923 * 6547 25 0 * * * * * * 5296 0 0 Y 26 * * * * 5175 * * 3090 * 2762 5941 * * * 6192 * * 3056 * 844 26 0 * * * * * * 5296 0 0 T 27 3286 5669 * 6979 * 6704 6421 5202 * 5563 6262 * 6873 4497 * 3652 1441 1840 * 7091 27 0 * * * * * * 5498 0 0 F 28 7097 * * * 317 * * 4516 * 4260 * * * * * 4752 * 4782 * 5581 28 0 * * * * * * 5411 0 0 E 29 6084 * 3818 3088 5671 * 5247 3004 2547 4031 * 3943 * 3758 3360 6336 * 3451 6950 4455 29 0 * * * * * * 5411 0 0 V 30 3953 * * * 6189 * * 6935 * 5304 * * * * * * 3815 291 * * 30 0 * * * * * * 5411 0 0 D 31 3028 * 1688 3403 5962 * 4339 * 5785 5745 * 3648 3499 5958 4165 3362 6409 5560 * * 31 0 * * * * * * 5411 0 0 V 32 4683 6161 * 6805 * 5448 6740 3676 2471 3355 5308 5488 2269 5187 3227 4775 5736 3251 * * 32 13 6844 * 1585 585 * * 5365 1000 0 R 33 5610 * 2294 6024 6305 4898 5237 * 2581 * 6579 2719 * 4543 2342 3851 5263 * 6988 6090 33 20 6193 * 1000 1000 * * 5365 1000 0 A 34 1066 6817 * * 6523 * * 5859 * 3262 3320 6579 5587 * * 3420 5707 3155 * 5329 34 0 * * * * * * 5365 0 0 N 35 * * 6367 * * 6161 5505 * 5981 * * 1428 * * 5642 2769 1330 * * * 35 0 * * * * * * 5365 0 0 K 36 * * * * * * * * 133 * * * * 5578 3891 * * * * * 36 0 * * * * * * 5365 0 0 T 37 5207 * 5043 5772 4655 5724 4524 3068 3984 3558 * 5443 3000 5518 4752 4153 2348 4459 * 4326 37 0 * * * * * * 5365 0 0 E 38 * * 2296 1372 * 5391 * * 5444 6725 6870 5616 * 2112 6483 4859 6360 6528 6307 6360 38 16 * 6508 * * * * 5416 0 0 V 39 5037 * * * 6318 * * 632 * 3915 5255 * * * * * 6506 2265 * * 39 0 * * * * * 0 5407 0 1000 K 40 4312 * * 5686 * 6431 * * 521 * * * * 6435 2443 5984 * 6575 * * 40 0 * * * * * 0 5407 0 1000 D 41 2973 * 4089 2744 * * 4549 6089 2121 5533 * 3699 * 3703 3275 4123 4932 6879 * * 41 0 * * * * * 0 5407 0 1000 A 42 886 5911 6938 4433 6336 * * 4559 * 4461 5832 6270 * * 5556 6001 * 6561 4595 2571 42 0 * * * * 0 * 5407 0 1000 V 43 * * * * 2599 6899 * 1834 * 2344 6149 * * * * * * 1578 * * 43 0 * * * * * * 5416 0 0 E 44 * 6083 * 627 * * * 6099 3061 5380 * 6189 * 3608 5794 5886 4366 * * * 44 0 * * * * * * 5416 0 0 S 45 3945 * 6176 3161 5569 6450 5640 5580 2131 3607 5401 5757 * 3827 3725 3101 3814 5765 * 4994 45 0 * * * * * * 5416 0 0 I 46 4023 6307 * * 3854 * 5876 1979 5184 1675 5209 6540 * 6448 4589 * 6986 3157 5932 5785 46 24 * 5932 * * * * 5416 0 0 F 47 * 6280 * * 734 * * * * 5686 * * 5481 * * 6738 * * 6805 1619 47 45 5040 * 1139 873 * 0 5392 2066 1000 G 48 6266 * 2956 4478 * 1813 * * 2518 * * 2335 * 4338 4878 3788 * * * * 48 0 * * * * * 0 5392 0 1000 V 49 5788 * * 5775 5600 * * 3216 6306 3495 6340 * * 6866 * 7188 5680 542 * * 49 17 6393 * 1000 1000 0 * 5392 1000 1000 K 50 6296 * 4416 5168 * 6045 5826 * 1042 * * 3432 3490 6976 4182 4505 3395 6588 * * 50 0 * * * * * * 5416 0 0 V 51 * * * * * * * 3237 * * * * 3127 * * 5932 4838 458 * * 51 0 * * * * * * 5416 0 0 D 52 3629 * 3407 3511 * * * 2911 3134 3223 * 5517 * 4645 5046 4095 3719 2967 * 5121 52 0 * * * * * * 5416 0 0 K 53 3211 * 3467 3677 * 4324 5876 * 1744 * * 4161 * 5937 3654 2334 6986 * * * 53 0 * * * * * * 5416 0 0 V 54 * 4976 * * * * * 2521 * * 4215 * * * * * 6508 456 * * 54 18 * 6340 * * * * 5416 0 0 N 55 5646 5558 * * * * 5109 * 4172 * * 726 * 5265 2499 5662 4659 * 7040 * 55 0 * * * * * 0 5404 0 1000 I 56 6428 * * * * * * 3458 * 6427 * * * * * 2448 735 3300 * * 56 12 6870 * 0 * * 0 5404 1000 1000 M 57 5622 4881 * * 5605 * 3618 3278 6376 1869 3355 * * 4318 4617 3527 4730 3409 * 4389 57 25 * 5858 * * * 0 5466 0 1000 N 58 6580 6852 * * * * 7418 1619 * 5643 5376 1477 * * 2983 6836 4847 3714 * * 58 12 * 6880 * * 707 1368 5432 0 1339 Y 59 5977 6548 * 6884 5809 * * 4949 3010 3256 3822 5550 6461 4567 3235 4785 3314 2543 * 2990 59 11 * 7060 * * * 0 5452 0 1661 K 60 5790 6254 4717 4803 5893 * * 5897 1860 4410 3708 6333 2364 4038 3727 3964 4749 5796 * * 60 143 6453 3592 2322 322 * 0 5446 1000 2136 G 61 5498 * * * * 875 * * 4538 * * 5192 2378 * 3569 3813 6120 * * * 61 71 5763 5073 1304 749 * 0 5396 1502 3397 K 62 4653 * * 4514 * 4969 6407 5727 609 * * * * 4048 3429 6351 4931 * * * 62 0 * * * * * 0 5359 0 3432 S 63 3725 5910 5452 4727 5162 5740 * 2884 2594 4575 * 4562 3971 * 3254 3864 3396 4665 * 4522 63 24 5936 * 2807 222 * 0 5359 1000 3432 K 64 4316 6238 * * 6115 6083 6413 6214 775 6687 * * * * 2417 5490 4327 6094 * 6152 64 80 4221 * 1528 615 * 0 5359 2382 3432 R 65 6647 6252 * 5942 * 5905 * 6504 2865 6190 5560 6513 * 5161 587 5964 6565 6158 * 6017 65 76 4287 * 1135 877 * 0 5406 2452 3432 V 66 3506 4657 6053 * 2861 6187 6029 4098 3414 3815 3819 4560 * 4507 3672 3834 4436 3292 * 6251 66 98 3927 * 986 1014 * 0 5406 2595 3432 G 67 * * * * * 1227 * 5497 2708 6605 6471 4693 * 5134 2149 5586 4287 * * 6453 67 93 4248 6699 1272 771 * 0 5395 2027 3432 R 68 4464 * * * 4240 2834 6401 * 2340 4617 6128 3912 4200 4430 2235 4111 6696 * * 4321 68 69 4425 * 1324 736 * 0 5390 2244 3154 Y 69 5924 * * * 2546 3255 4972 2936 3769 5337 5456 3799 6636 6590 3276 4312 4755 3489 * 4259 69 69 4880 6314 2182 359 * 0 5390 1956 3154 T 70 4071 * * 4173 4931 * * 3350 3235 2780 4606 5264 3602 5255 4448 3470 3643 3872 * 4563 70 0 * * * * 3145 173 5379 0 3280 G 71 4661 * * * * 543 6034 4859 6170 * * 6059 * * * 4622 5624 5107 5180 3681 71 40 5198 * 2857 214 1474 644 5383 1853 3089 M 72 6709 * * * 5023 * 3974 6131 1676 5218 4921 6178 6522 4255 2373 3820 * 5870 * 2728 72 0 * * * * * 0 5382 0 3149 T 73 6722 * 5437 3839 6206 * * * 2360 5234 * * * * 1671 4688 1970 5294 * 5099 73 37 5317 * 1877 458 500 1771 5419 1621 3149 S 74 3710 6012 3918 5953 * 5879 * 6405 2188 7334 5219 3592 2399 6267 4255 3028 4397 5447 * 6185 74 39 5242 * 0 * 0 * 5481 1716 2120 R 75 4104 * 1988 6468 5651 2530 3722 * 4091 5414 * 3281 * * 3279 3601 5975 * * 5424 75 12 6868 * 1000 1000 * * 5501 1000 0 R 76 * * * 4043 3748 7073 * 6615 3025 4816 5696 6412 6364 * 3581 * 4730 5365 2543 1605 76 0 * * * * * * 5501 0 0 R 77 * * * * * * * * 131 * * 6364 * * 3749 * * * * * 77 0 * * * * * * 5501 0 0 K 78 * * * 5534 * * * 4962 578 5170 * * * * 2298 * * 5021 * 6094 78 0 * * * * * * 5501 0 0 A 79 488 * * * 5380 * * 5342 * * 3114 * * * * * * 3022 * * 79 0 * * * * * * 5497 0 0 I 80 * * * 6420 3154 * * 1290 * 4601 6017 * * * * * 5091 3843 6618 1731 80 0 * * * * * * 5497 0 0 V 81 * 6953 * * 4263 * * 2023 * 4158 * * * * * * 5458 701 * * 81 14 * 6672 * * * * 5497 0 0 K 82 6479 * * 5527 6009 * 6673 5958 2826 * * * * 4413 3025 3683 1012 5567 * 5629 82 0 * * * * 0 * 5419 0 1000 L 83 * * * * 4091 * * 4613 * 385 4341 * * * * * * 3554 * * 83 180 * 3094 * * * * 5434 0 0 T 84 3307 * 4077 4083 * 5468 4842 * 1837 6032 4865 4702 3459 3999 3401 4262 6054 6570 * 5090 84 341 * 2249 * * 0 * 5410 0 3281 A 85 2501 * 4289 2907 * 4702 5851 * 2442 5174 * * 2663 * 4855 3481 4407 4563 * * 85 257 * 2616 * * 75 4298 5403 0 3784 D 86 * * 1991 2011 * 2138 5799 * * * * 2917 3502 4854 * * * * * * 86 147 5445 3757 0 * 100 3900 5321 1000 3367 S 87 * * 3943 6290 * 898 3543 6077 4929 5538 * 5626 6546 4229 * 3365 * 4687 * 6574 87 66 * 4475 * * 0 * 5066 0 2669 K 88 4868 * 2392 2071 * * 5050 * 2944 * * 4682 * 2347 7151 * 6219 5725 * 3290 88 106 * 3813 * * 0 * 5093 0 2063 E 89 2708 * 5588 4162 5525 * * 4689 2813 5829 4997 * 4723 * 5253 1955 2455 6128 * * 89 0 * * * * 516 1733 4945 0 2229 I 90 6036 * * * 5191 * * 472 * 2825 5265 * 5873 5691 * 6787 * 5394 * * 90 0 * * * * 0 * 4985 0 1000 E 91 5095 * 1305 2811 * 6168 * * 5300 5537 * 3628 2278 4110 * 5815 * * * * 91 38 * 5280 * * * * 4977 0 0 I 92 6245 * * * 1914 * * 1926 * 1864 6129 * * * * * * 3108 * 4232 92 0 * * * * 0 * 4929 0 1513 F 93 3729 * 4700 * 666 * * 5534 * 4364 * * 5880 * * 5269 * 4137 * 3543 93 0 * * * * * * 4472 0 0 E 94 * * 2579 426 * * * * * * * * * 3497 * * * * * * 94 0 * * * * * * 3948 0 0 A 95 1406 * * * * * * * * * * * * * * 683 * * * * 95 0 * * 0 * * * 2471 0 0 //