HHsearch 1.5 NAME c3j3aK_ FAM FILE c3j3aK_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j3aK_.a3m DATE Sat May 4 08:47:05 2013 LENG 98 match states, 98 columns in multiple alignment FILT 44 out of 48 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.7 EVD 0.4365 1.3162 SEQ >ss_dssp CCCCTTHHHHHHHHHHHHSEEECCSCSSCCSCSSSCCSSCSTTTHHHHHHHHHHTSSEEEECTTTTCEEEECHHHHHHHHHHHTCCTTCCCSCCCCCC >sa_dssp EEBDEEBCDCBADCAAEDCDBDBDDCDEDDECEEDBEEEBBBCCBCCAADCADEDDCBEBEDDEDDBDAEBCEDACEDADECCECEEECECDEEEEEE >ss_pred CCCCHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHHHHHHHHHCCCHHHCCCCHHCCC >ss_conf 94535678999999964075998307888856422547884179999997520043444200123356888288999999981999544576300279 >Consensus MlipkxxrxxIyxxLfxeGVxvxkkdxxxxxHxxxxxxxvpNLxVxkxmxSLxSrgxVxexfxWxhxYxxLtxeGieyLRxyLxLpxxvvPxTxkkxx >c3j3aK_ MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSR >UniRef50_A0C9U6(4-95:136) Chromosome undetermined scaffold_16, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0C9U6_PARTE E=5e-13 s/c=0.82 id=38% cov=95% --VKRQDRRKVYEYLLLEGVIVIKKDMALPLH---AETGVKNLEVWMLLRSLRDKKLVDLVFSWQYYYYYLKAEGVKYVRDKLGIVEDVIPATFKKA- >UniRef50_Q24F70(6-95:162) Plectin/S10 domain containing protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q24F70_TETTH E=9e-11 s/c=0.76 id=41% cov=92% ----KATKIRIYKQLLQDGVFVLKKDFE-GHHEETG---VPNLHCYILVRSLKDRGFLEEIFNWGFTYYYLNKEGCEYLKTKLGISADnVIPKTFKAS- >UniRef50_B0E5I8(1-93:127) 40S ribosomal protein S10, putative n=2 Tax=Entamoeba RepID=B0E5I8_ENTDI E=4e-29 s/c=1.38 id=44% cov=96% MRIATKDIIAIYKQLFNDGCIVCHKDF-VCLHPVFG---IPNLQVFMLMKGLATKKCVKETCNWRCLYWTLNDEGIAYLRQKLALPEDAVPSTLKQT- >UniRef50_A2G675(1-93:141) Plectin/S10 domain containing protein n=4 Tax=Trichomonas vaginalis RepID=A2G675_TRIVA E=1e-26 s/c=1.29 id=36% cov=96% MYMPTAIRRRILRYLFENGVLCV-SDIQSGTHEEL---DCLNIYPYQIGRAFVTKGFCIKTYAWSHAYYTLTDKGIEYLRNYFGLPANAAPATLREA- >UniRef50_Q98RW8(1-87:93) 40S ribosomal protein S10B n=1 Tax=Guillardia theta RepID=Q98RW8_GUITH E=7e-22 s/c=1.20 id=39% cov=90% MIIEKRYRRKIYEELFKEGVYIVK--------DERFNYNCEKFIALKILKGLLSKGFVNEIYSWKYHYFVLNQEGLEYVRKLLNLPNGVVPNTHK--- >UniRef50_A9BKS3(12-91:96) Rps10b n=1 Tax=Cryptophyta RepID=A9BKS3_9CRYP E=8e-19 s/c=1.18 id=38% cov=83% -----------YTQLFKDGLLVV---KKEKKFFLEKEKQIESIIVIKLLKSLVSKGFVKESFCWKYYYFILNDRGIEFLRNYLQIPSDVIPLTL---- >UniRef50_C6LNQ2(4-104:136) Ribosomal protein S10B n=2 Tax=Giardia intestinalis RepID=C6LNQ2_GIALA E=7e-13 s/c=0.74 id=35% cov=97% --IPKAVYKAVYAHLYENASLALKEYWRVGNVPgitYIDENGKPCnptyIHVNCIMQSLESRGVVKDTFAWRHHYYLLTEKGEQFIRRELDLADDVLPTP FSK-- >UniRef50_Q3LVY9(1-82:84) Ribosomal protein S10 n=1 Tax=Bigelowiella natans RepID=Q3LVY9_BIGNA E=8e-08 s/c=0.71 id=30% cov=85% MLVSKFKLIKIYEKILNDGIIIIPKNFNRTYQ---FCNSFYAFHLKKVLISLHSRKFMNEILLGSNYYWTLTKKGERFLRNYFNL------------- >UniRef50_Q8SS17(1-79:96) 40S RIBOSOMAL PROTEIN S10 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SS17_ENCCU E=1e-05 s/c=0.65 id=35% cov=82% MLVPTANKYKIKRRLLEK-KALLLEDTVLGNHRDLE---IPNLHLKIFMKTMISYGYVQRIHVWRHSYFLLTPLGESRLREEL--------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 117 * * * * * * 3682 * * 1 0 * * * * * * 3409 0 0 L 2 * * * * 2890 * * 2737 * 1024 * * * * 4624 * * 5298 * 2669 2 0 * * * * * * 3474 0 0 M 3 * * * * * * * 1023 * 5209 2209 * * * * * * 1919 * * 3 0 * * * * * * 3676 0 0 P 4 4768 * * 4547 * * * * 3704 * * * 608 * 5145 2651 * * * * 4 0 * * * * * * 3676 0 0 K 5 * * * 4935 * * * * 645 3799 * * * * 3673 5207 2731 * * * 5 0 * * * * * * 3823 0 0 K 6 1605 * 3761 2885 4115 * * * 3009 * * * 6007 4153 3717 3665 5840 4790 * * 6 0 * * * * * * 3823 0 0 N 7 * * 2467 5128 * * 5761 4559 4115 * * 1539 * 4488 * 3239 3578 4250 * 4606 7 0 * * * * * * 3823 0 0 R 8 * * * * * * * 4889 2688 2792 * * 5128 5252 894 5564 * * * 4250 8 0 * * * * * * 3823 0 0 I 9 * * 3605 5128 * * * 2328 2532 5394 * 3465 * * 1621 * * 5207 * 4304 9 0 * * * * * * 3823 0 0 A 10 1243 * 5088 3973 * * * 6007 2245 5445 5351 5143 * * 3303 4196 5257 * * * 10 0 * * * * * * 3823 0 0 I 11 * * * * * * 5564 439 * * * * * * * 5128 * 2233 * * 11 0 * * * * * * 3823 0 0 Y 12 * 6107 * * 5316 * 3527 * 4469 3612 5230 * * * * 5011 * * * 537 12 0 * * * * * * 3776 0 0 E 13 4237 * * 1292 * * * * 2927 * 5083 * * 3678 2248 5344 3959 * * * 13 0 * * * * * * 3776 0 0 L 14 4006 * * 4736 3825 * 2811 * 3725 6223 * 6110 * 3308 4472 * * 3237 * 1593 14 0 * * * * * * 3773 0 0 L 15 * * * * 3825 * * 3956 * 379 * * 5713 5142 * * * 4362 * * 15 0 * * * * * * 3773 0 0 F 16 5142 * * * 641 * * 4393 * 2435 * * * * * * * * * 3355 16 0 * * * * * * 3773 0 0 K 17 * * * 2838 * * 4778 * 1662 4918 * 3249 * 2779 2872 5925 3825 * * * 17 21 6110 * 1585 585 * * 3773 1000 0 E 18 * * 1978 899 * 5713 * * 4472 * * 3399 * 6103 * 4778 * * * * 18 67 * 4472 * * * * 3773 0 0 G 19 4153 * * * * 83 * * * * * * * * * * * * * * 19 0 * * * * 0 * 3681 0 1000 V 20 5360 4978 * * * * * 4301 4472 4955 * * * * * 4258 * 389 * * 20 0 * * * * * * 3773 0 0 M 21 4472 6105 * * 4756 * * 1913 * 1591 2549 * * * * * * 3356 * 4736 21 0 * * * * * * 3773 0 0 V 22 3648 4555 * * 4255 * * 3212 * 4472 * * * * * 5118 5330 802 5925 5124 22 0 * * * * * * 3773 0 0 A 23 1149 3174 * * * * * 3577 * 2896 * * * * * * * 2184 * * 23 112 * 3741 * * * * 3773 0 0 K 24 5932 * * 3486 * * 4022 * 759 4225 * * 3519 4620 4049 * * * * * 24 64 * 4535 * * 1018 983 3750 0 1552 K 25 * * * 3255 * * * * 488 * * 3327 * * 4704 4504 * * * * 25 0 * * * * * 0 3740 0 1419 D 26 * * 458 * * * * * 5193 * * 3216 * * 5601 3974 * * * 4241 26 0 * * * * 914 1092 3740 0 1419 V 27 5498 * * 5344 1805 5812 4968 4504 4104 4395 4822 * 2839 5785 4325 5413 3803 6167 4229 4009 27 48 * 4919 * * * 0 3709 0 1000 H 28 4846 * 5134 4142 * * 4691 * 3240 5069 5147 2141 * 3598 2007 * 5323 3785 * 5509 28 122 6027 3933 0 * 940 1063 3790 1000 1510 M 29 4075 * 5228 4736 5590 4091 * 4504 * 1804 4189 * 3437 4082 3984 3966 * 2908 * * 29 105 5045 4655 0 * 547 1663 3741 1195 1981 P 30 3878 4116 5638 5777 * 2380 * * 3452 * * * 1650 5697 * 4160 2656 * * * 30 35 5364 * 0 * 896 1112 3775 1000 1531 K 31 * * * * * * 3638 * 1732 3140 3851 3001 5628 4609 3941 5195 4504 * 4092 4193 31 22 * 6028 * * * 0 3709 0 1000 H 32 * * * * 4768 * 378 * 5104 * * * * 4039 * 5366 5186 4254 * * 32 145 * 3383 * * 1047 955 3826 0 1445 P 33 6083 4892 4539 2669 4793 3652 * 5570 * * * * 1159 * 3284 5251 4719 * * * 33 86 4106 * 1585 585 * 0 3629 1000 2037 E 34 * * 2837 1195 * * 3303 * * 4216 * * * 3486 * * 3519 4897 * 4106 34 0 * * * * * 0 3629 0 2037 L 35 5260 * * 4793 4897 * * 1672 4719 1564 5254 * * * 4539 * 4509 3305 * * 35 734 * 1327 * * 528 1707 3629 0 2037 A 36 3295 * 3748 1814 2887 1968 * * 4333 * * * 3338 * * * * * * * 36 608 * 1539 * * 4259 77 3708 0 2739 D 37 4554 3408 3953 1533 * 3114 * * * 3811 * 3720 * 2973 * * * 3986 * * 37 257 * 2615 * * 2965 198 4020 0 3182 K 38 * * * 2926 * * * * 1743 * * 2285 4124 * * 3320 2899 * * 3774 38 155 3295 * 1605 575 638 1485 3450 1400 3137 N 39 * * 1973 4860 * 1942 4491 * * * * 2712 * 4696 * 3594 2918 * * * 39 49 4901 * 1000 1000 0 * 3598 1000 2792 V 40 * 3648 * * 4313 * * 2205 4256 3942 5594 * * * * * 3841 1168 * * 40 0 * * * * * * 3774 0 0 P 41 5352 * * 3858 * * * * 3308 4550 * * 944 5936 3931 5495 3498 * * 4307 41 0 * * * * * * 3793 0 0 N 42 4307 3606 * * * * * * 4786 * * 378 * * * 4935 5124 * * * 42 79 4234 * 2000 415 * * 3793 1000 0 L 43 * * * * 3526 * * 2494 * 481 * * * * * * * * 5690 * 43 0 * * * * * * 3793 0 0 H 44 * * 5495 4411 * * 1362 3858 * * * * * 1630 * * * * * 2738 44 0 * * * * * * 3793 0 0 V 45 4786 4721 * * * * * 5586 * 3387 * * 4550 * * * * 383 * * 45 0 * * * * * * 3793 0 0 M 46 * * * * 5058 * * 1614 3387 4097 2185 4234 * * * * 4099 4488 4935 3633 46 0 * * * * * * 3793 0 0 K 47 * 4234 * * * * * 3590 1083 5379 2579 * * 3029 4427 * * 4989 * * 47 0 * * * * * * 3793 0 0 A 48 2158 * * * 3801 * * 2484 * 1992 5690 * * * * * 2719 3282 * * 48 0 * * * * * * 3793 0 0 M 49 * 4533 * * * 4550 * * * 1736 796 * * * * * * 4721 * * 49 0 * * * * * * 3793 0 0 Q 50 5660 * * * * 4337 * 4307 1745 * * * * 1623 1959 * * * * * 50 0 * * * * * * 3793 0 0 S 51 4550 * * * * 3428 * * * * * * * * * 288 4471 * * * 51 0 * * * * * * 3793 0 0 L 52 * * * * 2719 * * * * 351 3961 * * * * * * * * * 52 0 * * * * * * 3793 0 0 K 53 4141 5707 5199 4234 * * 3869 3707 1464 4052 * * * 5841 4253 5352 3534 3390 * * 53 0 * * * * * * 3793 0 0 S 54 4420 * 3820 * * * * * * * * * * * * 341 3426 * * * 54 0 * * * * * * 3767 0 0 R 55 * * * * * * * * 1492 * * * * * 828 4815 * * * 4452 55 0 * * * * * * 3796 0 0 G 56 5677 * 5357 3900 * 659 * * 2706 * * 3776 * * * 5079 * * * * 56 0 * * * * * * 3796 0 0 Y 57 * 5074 * * 1631 * * * * 2257 * * 5753 * * * * 3705 * 1543 57 0 * * * * * * 3796 0 0 V 58 5080 4533 * * * * * 4094 * 3904 4312 * * * * * * 412 * * 58 0 * * * * * * 3796 0 0 K 59 * * 3680 4154 * * * 4533 1272 * * 3267 * 4452 3068 * 3098 5457 * * 59 0 * * * * * * 3796 0 0 E 60 * * 4226 549 * * * * 4533 4926 * * * 5221 4452 * 3125 * * * 60 0 * * * * * * 3796 0 0 Q 61 * * * * * * 5457 2413 2884 * * * * 1816 4538 4939 1936 4926 * * 61 0 * * * * * * 3796 0 0 F 62 * 5074 * * 676 * 4452 * * 3860 * * * * * * 4815 * * 2364 62 0 * * * * * * 3796 0 0 A 63 1539 4939 * * * * * * * 4312 * 2249 * * * 2167 4581 3347 * * 63 0 * * * * * * 3796 0 0 W 64 * * * * * 4312 * * * * * * * * * * * * 75 * 64 0 * * * * * * 3796 0 0 R 65 * 5673 * * * 4241 * 5753 3477 * 4332 5080 * 1959 1361 3419 * * * * 65 0 * * * * * * 3796 0 0 H 66 * 5074 * * 4713 * 908 * * * * 4312 * * * * 4258 * 3774 2162 66 0 * * * * * * 3796 0 0 F 67 4533 5439 * * 3036 * 2561 * * 4253 * 4599 * 5594 * 4452 4713 * * 1171 67 0 * * * * * * 3796 0 0 Y 68 * * * * * * 5080 * * * * * * 5753 * * * * * 71 68 0 * * * * * * 3796 0 0 W 69 * * * * 2659 * * * * * * * * * * * * * 1076 1444 69 0 * * * * * * 3796 0 0 Y 70 * 4815 * * 3024 * 5753 4230 * 3031 * * * * * * 1574 3381 * 2215 70 0 * * * * * * 3796 0 0 L 71 * * * * * * * * * 0 * * * * * * * * * * 71 0 * * * * * * 3796 0 0 T 72 * * * * * * * * 4221 * * 1837 * * * * 585 * * * 72 0 * * * * * * 3737 0 0 N 73 4907 * 1873 3445 * * * * 3460 * * 1516 3300 4743 * * 5486 * * * 73 0 * * * * * * 3737 0 0 E 74 * * 3765 625 * * * * 2740 4416 * 5357 * 5509 4825 * * * * * 74 0 * * * * * * 3737 0 0 G 75 * * * * * 0 * * * * * * * * * * * * * * 75 0 * * * * * * 3737 0 0 I 76 * 4663 * 2715 * * * 878 * 3659 * * * * * * * 2434 * * 76 0 * * * * * * 3737 0 0 Q 77 3176 * 3712 1089 * * * 5006 4191 * * 3739 * 3879 4283 4416 * 5976 * * 77 0 * * * * * * 3737 0 0 Y 78 * * * 4790 1916 * 4524 * * * * * * * 4416 * * * * 716 78 0 * * * * * * 3737 0 0 L 79 * * * * * * * 4209 * 289 4132 * * * * * * 3823 * * 79 0 * * * * * * 3737 0 0 R 80 * * * * * * * * 4663 * * * * * 58 * * * * * 80 0 * * * * * * 3737 0 0 D 81 4734 5957 3408 1965 * * * * 3931 * * 2357 * 3239 3702 4569 3180 * * * 81 0 * * * * * * 3737 0 0 Y 82 * 4236 * 3023 4656 * * * 3294 4743 * * * * * * * 4553 4193 869 82 0 * * * * * * 3737 0 0 L 83 * * * * 3387 * * * * 145 * * * * * * * * * * 83 0 * * * * * * 3737 0 0 H 84 5038 * 3601 * * 3031 1267 * * * * 2061 * 4110 * * * * * 4266 84 0 * * * * * * 3642 0 0 L 85 * * * * 4931 * * 2902 * 374 * * * 4645 * * * 5515 * * 85 0 * * * * * * 3642 0 0 P 86 3428 * * * * 5051 * * * * * * 361 * * 4013 * 4784 * * 86 0 * * * * * * 3513 0 0 P 87 1590 * 4001 2681 * * * * * 4873 * 4528 2082 * * 3204 5191 * * * 87 0 * * * * * * 3513 0 0 E 88 * * 1806 1497 * 3913 5829 * * * * 4248 * * * 3298 3042 * * * 88 65 4508 * 0 * * * 3513 1000 0 I 89 2463 * * * * * * 1667 * * 5505 * * * * * * 1054 * * 89 0 * * * * * * 3513 0 0 V 90 4248 * * * 2819 * * 2803 * 3548 3811 * * * * * * 984 * * 90 0 * * * * * * 3513 0 0 P 91 * * * * * * * * * * * * 0 * * * * * * * 91 0 * * * * * * 3513 0 0 A 92 1134 * 5281 5516 * 5829 * 4615 4508 4715 5439 3036 * * * 3365 3644 6352 5505 * 92 0 * * * * * * 3513 0 0 T 93 * * * * * * * * * * * * 3644 * * 4107 214 * * * 93 0 * * * * * * 3513 0 0 L 94 * * * * 2753 * 2052 * * 1102 3814 * * 4993 * * * * * 4563 94 57 4697 * 0 * * * 3484 1000 0 R 95 * * * * * * * 3824 1070 * * * * 3022 3228 3059 3276 * * * 95 0 * * * * * * 3487 0 0 R 96 4284 * * 4037 * * * * 1099 * * * 4316 3914 1716 * * * * * 96 0 * * * * * * 3325 0 0 S 97 1996 * * 3499 * * * * * * * * * 1883 * 2214 4006 3158 * * 97 0 * * * * * * 3043 0 0 R 98 * * * * * * * * * * * * * 1852 468 * * * * * 98 0 * * 0 * * * 2289 0 0 //