HHsearch 1.5 NAME c3j39p_ FAM FILE c3j39p_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j39p_.a3m DATE Sat May 4 08:40:36 2013 LENG 91 match states, 91 columns in multiple alignment FILT 30 out of 34 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.2 EVD 0.4638 1.6037 SEQ >ss_dssp CCCCSSCGGGGGSTTTTCHHHHHHHHHHHHHTTCCBCCTTTCSSCEEEEETTEEEETTTCCEEECCSSSSSCHHHHHHHHHHHHHHHHHHC >sa_dssp EEEDEEDDDBDEDCEDEDDEECEECDECBECBDDECDAEECEDECADCDEECDACAEEDEEDBECCCDDCDDEECDEEDEDEEEEDDEEEE >ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCEEECCCEECCCHHHHHHHHHHHHHHHHHCC >ss_conf 9866023214451241027899999999998426477886585203544321226336996880452001443789999999999851049 >Consensus axxTkkvGxxGrfGxRYGxxlRkxvxkIexxqxxkyxCpxCgkxxvkRxxxGIWxCkkCgxxxAGGAyxpxTxxgxtxxxxirrlxexxex >c3j39p_ AKRTKKVGIVGKYGTRYGASLRKMVKKMEITQHSKYTCSFCGKDSMKRAVVGIWSCKRCKRTVAGGAWVYSTTAAASVRSAVRRLRETKEQ >UniRef50_P60619(2-92:92) 50S ribosomal protein L37Ae n=5 Tax=Euryarchaeota RepID=RL37A_HALMA E=7e-26 s/c=1.30 id=30% cov=101% ASKSGKTGSSGRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRRSIRAALSEDEE >UniRef50_D1J8Z6(15-95:114) 50S ribosomal protein L37Ae n=1 Tax=uncultured archaeon RepID=D1J8Z6_9ARCH E=3e-22 s/c=1.31 id=35% cov=88% --------SAGRFGVRYGTRIRKAVVAIEERTHAAHNCPKCEKGSVKRIGTGIWKCAKCGYTFSGGTYIPQTPLGLASQRAIKRAVE---- >UniRef50_C7DI03(3-80:81) Ribosomal L37ae protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI03_9EURY E=2e-17 s/c=1.15 id=38% cov=86% -----------KYSIRYGASLRKRHSKVKSQKIALYKCEICGKVEVERVGTGIWKCRNCKNTFAGGAYALTTAQGEIAKRLIEDLGHS--- >UniRef50_B1L6N5(12-76:82) Ribosomal L37ae protein n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L6N5_KORCO E=3e-11 s/c=1.07 id=39% cov=68% --------------TRYGSKIRKRVEFILQKSKRTYKCPYCGAQAVRRLRLGVWSCKKCGKVFTGGAWEPFTAVA---------------- >UniRef50_Q3LWL0(12-68:76) Ribosomal protein L37ae n=1 Tax=Bigelowiella natans RepID=Q3LWL0_BIGNA E=5e-09 s/c=1.09 id=38% cov=64% -----------KFGAKYGSSLRIRYMKIEKICKKTYKCIFCNKLAIIKVSTGLWKCKKCHQQMTGGAY----------------------- >UniRef50_D2EEZ7(4-61:64) 60S ribosomal protein L37a, putative n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EEZ7_9EURY E=3e-08 s/c=1.03 id=34% cov=65% --------------AKYGVGVRKRIDAIKQLRSEKYPCPRCKKLSIRRKSAGIWKCKHCGLVIADNAYSLSS------------------- >UniRef50_A6UTE9(5-92:96) 50S ribosomal protein L37Ae n=17 Tax=Euryarchaeota RepID=RL37A_META3 E=8e-20 s/c=1.11 id=42% cov=98% -SHTKKIGSAGRFGARYGRKVRVRVRDVEIKQKKAYKCPVCGFMKLKRISTSIWECKKCGAKMAGGAYTPETGAGKVVAKAIRRVIESK-- >UniRef50_B5A4L2(2-73:75) 60S ribosomal protein L37a (Fragment) n=1 Tax=Gymnochlora stellata RepID=B5A4L2_GYMST E=1e-15 s/c=1.17 id=41% cov=80% SGRTKKVGFTAKFGPRYGSTVRKKYLKIAITKKSKYYCQVCHRLRLRWFQIGLWKCSHCCIVVAGAAYKLSS------------------- >UniRef50_A0RXT9(11-65:69) Ribosomal protein L37AE/L43A n=4 Tax=Thaumarchaeota RepID=A0RXT9_CENSY E=3e-11 s/c=1.26 id=39% cov=62% -------------GARYGIKIRKEYTKIHFQLKEKRPCPECGSAKFGRVAVGIWECRKCGFKVAGTAY----------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 485 * * * * * * * * * * * * * * 1808 * * * * 1 0 * * * * * * 2522 0 0 K 2 * * * * * 3401 * * 911 * * * * * 3334 1867 * * * * 2 0 * * * * * * 2850 0 0 R 3 * * 4083 * * 4506 1840 * 2519 * * * * * 1174 * * * * * 3 0 * * * * * * 2934 0 0 T 4 * * * * * * * * 4083 * * * * * * 4100 180 * * * 4 0 * * * * * * 2934 0 0 K 5 * * * * * 3091 * * 483 * * * * * 3672 * * 3493 * * 5 0 * * * * * * 2934 0 0 K 6 * * * * * * * 4462 307 * * * * * 4133 * * 3484 * * 6 0 * * * * * * 2961 0 0 V 7 * * * * * * * 4377 * * * * * * * * 2864 296 * * 7 0 * * * * * * 2971 0 0 G 8 * * * * * 114 * * 4721 * * * * * 4717 * * * * * 8 0 * * * * * * 2971 0 0 I 9 * * * * 3709 * * 1444 * 4617 4765 * 3021 * * 1856 * 3665 * * 9 0 * * * * * * 3036 0 0 V 10 1157 * * * * * * * * * * * * * * 3651 1609 2794 * * 10 0 * * * * * * 3036 0 0 G 11 3709 * * * * 115 * * * * * * * * * * * * * * 11 0 * * * * * * 3036 0 0 K 12 * * * * * * * * 1130 * * * * * 881 * * * * * 12 0 * * * * * * 3258 0 0 Y 13 * * * * 768 * * * * * * * * * * * * * * 1276 13 0 * * * * * * 3258 0 0 G 14 * * * * * 77 * * * * * * * * * 4266 * * * * 14 0 * * * * * * 3330 0 0 T 15 1368 * * * * * * 4371 * * * * 2341 * * * 1619 4598 * * 15 0 * * * * * * 3404 0 0 R 16 * * * * * * * * 3423 * * * * * 141 * * * * * 16 0 * * * * * * 3404 0 0 Y 17 * * * * * * * * * * * * * * * * * * * 0 17 0 * * * * * * 3404 0 0 G 18 * * * * * 0 * * * * * * * * * * * * * * 18 0 * * * * * * 3404 0 0 A 19 1733 * * * * * * 4661 * 3162 5059 * * * 2571 2145 4598 3602 * * 19 0 * * * * * * 3404 0 0 S 20 * * * * * 3152 * * 2529 * * * * * 3431 1495 2518 3438 * * 20 0 * * * * * * 3404 0 0 L 21 3814 * * * * * * 2279 * 1170 * * * * * 4026 * 2204 * * 21 0 * * * * * * 3404 0 0 R 22 * * * * * * * * 4637 * * * * * 59 * * * * * 22 0 * * * * * * 3404 0 0 K 23 * * * * * * * 4352 598 * * * * * 1974 * * 4805 * * 23 0 * * * * * * 3404 0 0 M 24 4598 * * 3687 * * * 4071 2865 * 3378 * * 3318 1341 4637 4240 * * * 24 0 * * * * * * 3404 0 0 V 25 * * * * * * 4371 1887 * * 5097 * * * * * * 1150 3938 2878 25 0 * * * * * * 3404 0 0 K 26 3146 * 4497 4809 * * * 5367 1613 3147 4352 * * * 3872 3120 3846 4598 * * 26 0 * * * * * * 3404 0 0 K 27 2601 * 3368 3460 4809 * * * 907 * 4637 * * * * * 4710 * * * 27 0 * * * * * * 3404 0 0 M 28 * * * * 4071 * * 620 * * 3679 * * * * * * 2526 * 4714 28 0 * * * * * * 3404 0 0 E 29 4394 * * 546 * * 4661 * 3433 3360 * * * * * * * * * 4714 29 0 * * * * * * 3404 0 0 I 30 5203 * 5017 2399 4661 5130 * 1636 4352 4961 * * * 3645 5202 3623 * 3425 * * 30 0 * * * * * * 3404 0 0 T 31 * * 5017 4929 * * * 4352 2175 3867 4961 4637 * 2989 4598 2503 2697 5203 * * 31 0 * * * * * * 3404 0 0 Q 32 * 4352 * * * * * * 2900 4661 2460 * * 1178 3703 4809 4598 * * * 32 0 * * * * * * 3404 0 0 H 33 * * * * * * 1743 4371 1547 * * 4026 * * 2535 4497 * * * 4943 33 0 * * * * * * 3404 0 0 S 34 2129 * 5017 2784 * 4120 * * 2378 * * * * 2911 4809 2500 * * * * 34 0 * * * * * * 3404 0 0 K 35 3698 * 3438 * * * * * 1150 4371 * 4637 4943 * 3224 * 3135 * * 4714 35 0 * * * * * * 3404 0 0 Y 36 * 5184 * * * * 1627 * * * * * * * 4661 * * * * 715 36 0 * * * * * * 3404 0 0 T 37 3438 * * 5097 3494 * * * 2352 4961 * 4598 3577 * 5059 * 2387 2574 * 4394 37 0 * * * * * * 3404 0 0 C 38 * 88 * * * * * * * * * 4071 * * * * * * * * 38 0 * * * * * * 3404 0 0 S 39 5278 * * 3688 * * * 4352 4282 * 5620 * 951 4394 5097 3708 3679 5184 * * 39 0 * * * * * * 3404 0 0 F 40 5097 * 5130 3828 1407 * * 4371 3230 * * 4929 * * 2880 5059 * 3246 * 4809 40 0 * * * * * * 3404 0 0 C 41 * 88 * * * * * * * * * * * * * * 4071 * * * 41 40 5202 * 0 * * * 3404 1000 0 G 42 5202 * 4637 4598 * 634 4394 * 3602 * * 4352 * * 3874 * * * * * 42 48 4943 * 0 * * * 3404 1000 0 K 43 3394 * * 4929 4805 * * * 930 * * * * 4714 3186 2875 * 5202 * * 43 0 * * * * * * 3404 0 0 D 44 4661 * 2912 4202 * 3308 4071 * 2739 2550 4805 * 4637 4809 * * 3280 4371 * 5096 44 44 5059 * 0 * * * 3404 1000 0 S 45 1850 * * 4371 * 5096 * * 2580 * * * * * 2824 1893 5202 * * 4637 45 0 * * * * * * 3404 0 0 M 46 * * * * 4661 * * 3423 * 2533 3083 * * * * * 4961 877 * * 46 0 * * * * * * 3404 0 0 K 47 * * 3972 4371 * 4661 * 3520 964 * * * * * 2413 5130 * * * 4943 47 0 * * * * * * 3404 0 0 R 48 * * * * * * * * 4352 * * * * * 146 * * * 4394 * 48 0 * * * * * * 3404 0 0 A 49 5437 * * 3412 4394 * * 2865 2504 3348 * 4335 * 2916 5551 5203 4961 2634 * * 49 0 * * * * * * 3404 0 0 V 50 1457 4111 * * * 2100 * * * * * * * 4394 4809 2246 * 4305 * * 50 0 * * * * * * 3404 0 0 V 51 3565 * * * 5059 * * 2897 * 4809 * 4714 * * * 5367 1521 1907 * 4710 51 0 * * * * * * 3404 0 0 G 52 * * * * * 53 * * * * * * * * * 4805 * * * * 52 0 * * * * * * 3404 0 0 I 53 * * * * * * * 260 * 3373 * * * * * * * 3874 * * 53 0 * * * * * * 3404 0 0 W 54 * * * * * * * * * * * * * * * * * * 56 4710 54 0 * * * * * * 3404 0 0 S 55 4943 * * 2021 * 5096 4356 * 1754 * * 5620 * 3140 3356 4089 5097 5202 * * 55 0 * * * * * * 3404 0 0 C 56 * 0 * * * * * * * * * * * * * * * * * * 56 0 * * * * * * 3404 0 0 K 57 4598 * * * * 4325 * * 1351 * * * 5059 5500 1898 2867 4071 * * * 57 0 * * * * * * 3404 0 0 R 58 3985 * 5096 * * * 2670 5184 1065 * * 4371 * 4071 5437 4306 * * * 3972 58 0 * * * * * * 3404 0 0 C 59 * 88 * * * * * * * * * * * * * * 4071 * * * 59 0 * * * * * * 3404 0 0 K 60 * 4394 4929 * * 770 4352 * 2812 * 4306 5278 * * 5184 4714 * * * * 60 0 * * * * * * 3404 0 0 R 61 2937 * * * 3846 * * 4394 2207 3269 * 4371 * 4352 4180 * * 5097 * 1999 61 0 * * * * * * 3404 0 0 T 62 * * * * * * * 5278 1403 * * * * 2769 * * 2096 2214 * * 62 0 * * * * * * 3404 0 0 V 63 * * * * 1202 * * 3031 5096 * 3561 * * * * * 4961 2286 4943 4072 63 0 * * * * * * 3404 0 0 A 64 515 4961 * * * * * * * * * * * * * 4598 2141 * * * 64 0 * * * * * * 3404 0 0 G 65 * * 4497 * * 65 * * * * * * * * * * * * * * 65 0 * * * * * * 3404 0 0 G 66 4394 * * * * 268 * * * 4710 * 4497 * * * * 4661 * * * 66 0 * * * * * * 3404 0 0 A 67 312 4282 * * * * * * * * * * * * * 3818 3792 * * * 67 0 * * * * * * 3404 0 0 W 68 * * * * * * * * * * * * * * * * * * 1760 505 68 0 * * * * * * 3404 0 0 V 69 4296 * * 3325 * * * 4524 3401 4176 4810 4427 * 4061 4911 2802 3146 2452 * 4591 69 0 * * * * * * 3321 0 0 Y 70 * * * * * * * * * 2146 4978 * 895 * * * * 4024 * 2804 70 0 * * * * * * 3326 0 0 S 71 5212 * * 2284 4526 * * * 4712 * * 3040 * 3078 4930 1954 3473 3939 * * 71 0 * * * * * * 3353 0 0 T 72 * * * * * * * * * * * * * * * 3076 263 * * 4378 72 0 * * * * * * 3353 0 0 T 73 2828 * * 3584 * 4420 * * * * * * 1216 * * 3572 2586 4384 * * 73 0 * * * * * * 3169 0 0 A 74 1150 * * * * 3142 * 4718 * 4276 3388 * * 4080 * 2770 * 4464 * * 74 0 * * * * * * 3169 0 0 A 75 1203 * * * * 822 * * * * * * * * * * * * * * 75 0 * * * * * * 3131 0 0 A 76 2855 * * 3978 * * * * 1388 2978 * * * 4401 3706 * 4311 3119 * * 76 0 * * * * * * 3075 0 0 S 77 3325 * * * * * * 2771 * 4155 * * * * * 2281 1191 4218 * * 77 0 * * * * * * 3075 0 0 V 78 1889 * * * 2368 * * * * 4338 * * * * * 4195 * 1210 * * 78 0 * * * * * * 3075 0 0 R 79 3177 * * 3377 * * * * 1945 * * 4255 * 4137 2128 4067 2879 * * * 79 0 * * * * * * 3061 0 0 S 80 * * 3981 * * * * * 2664 * * 4140 * 3655 1426 1885 * * * * 80 0 * * * * * * 3029 0 0 A 81 2406 * * * * 3041 * 3981 * 3867 4140 4060 * * * 2058 2648 4590 * * 81 0 * * * * * * 3029 0 0 V 82 * * * * * * * 543 * 3201 3655 * * * * * * 2992 * * 82 0 * * * * * * 3029 0 0 R 83 * * * 2845 * * * 3043 2910 3561 * * * * 939 * * * * * 83 74 4322 * 0 * * * 3046 1000 0 R 84 3260 * 3711 * * * * * * * * 3919 * 4001 645 * 4287 * * * 84 95 3976 * 0 * * * 3046 1000 0 L 85 2636 * * * * * * 3324 * 790 * * * * * * * 2634 * * 85 0 * * * * * * 2861 0 0 R 86 3817 * * * * 2551 * 3416 2692 3663 * * * * 1583 * * 3360 * * 86 0 * * * * * * 2813 0 0 E 87 * * * 636 * * 3304 * 2505 * * * * * * 3663 * * * * 87 0 * * * * * * 2813 0 0 T 88 4146 * 3577 3465 * * * * * 2201 4027 * * 2821 * 2228 2886 * * * 88 0 * * * * * * 2677 0 0 K 89 * * 3305 3349 * 3436 * 3816 973 * * * * 3890 * * 4048 * * * 89 0 * * * * * * 2497 0 0 E 90 * * 1444 661 * * * * * * * * * * * * * * * * 90 0 * * * * * * 2360 0 0 Q 91 * * 2392 930 * * * * * * * * * 1812 * * * * * * 91 0 * * 0 * * * 2244 0 0 //