HHsearch 1.5 NAME c3j39k_ FAM FILE c3j39k_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j39k_.a3m DATE Sat May 4 08:45:02 2013 LENG 70 match states, 70 columns in multiple alignment FILT 20 out of 24 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.0 EVD 0.4512 1.4979 SEQ >ss_dssp CCEECCCHHHHHHHHSSSSCCEEEEECCSSCCEEEEECTTSCEEEECCSSHHHHHTSSSSCTTSEEEEEC >sa_dssp EEEEAEDCECBCEBBEDEDBECBCBCCCEECADACADBEEDBBCACBEDDEDAEEBDECBCEEBEDDEDE >ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEEECCEEEEEEECCHHHHHHHHHHCCCCCEEEEEC >ss_conf 9603533999999831487407999963870589986424799999669889999997379973487779 >Consensus MPkqIxdiKxFLxxxxrxdakxVxvkxnxxxtKFKvRxsryLYTlxvxdxxKAxklxxSLPpxlxxxxik >c3j39k_ MPREIKEVKDFLNKARRSDARAVKIKKNPTNTKFKIRCSRFLYTLVVQDKEKADKIKQSLPPGLQVKEVK >UniRef50_A2ETM7(25-93:98) Ribosomal protein L38e, putative n=5 Tax=Trichomonas vaginalis RepID=A2ETM7_TRIVA E=2e-11 s/c=1.01 id=43% cov=99% MPKQVTTPKEFLALAARSDAKWVKVKKSSDeNTKFKLRTTKYLYTLTVKPKF-VELVQNSIPESLEVIVL- >UniRef50_C4QYD7(1-78:78) Protein component of the large (60S) ribosomal subunit, has similarity to rat L38 ribosomal protein n=2 Tax=Dikarya RepID=C4QYD7_PICPG E=3e-11 s/c=0.89 id=47% cov=100% MPRQITDIKKFVELTRRADVKSATVKTNSKfnskgekyqQTKFKVRGARYLYTLIVEDADKAKKLVQSLPPQLKVTKL- >UniRef50_B0EMT4(17-85:93) 60S ribosomal protein L38, putative n=4 Tax=Entamoeba RepID=B0EMT4_ENTDI E=2e-10 s/c=0.97 id=40% cov=100% MPKQVQEFKQILKLLKSGSIRAVRVKTNGENTKFKVRCAKYLYTYICADKAKAEELKKAIPKDIHVVEI- >UniRef50_Q4UGN5(1-74:79) 60S ribosomal protein L38 n=3 Tax=Piroplasmida RepID=RL38_THEAN E=2e-10 s/c=0.90 id=44% cov=100% MPKELKDLKDYLNVLKRPDAKSVVVYKKKSkggllSTKFKVRCSRYLYTFSVPNQVKAAKVEATIPSNLEKKVI- >UniRef50_B3L5A8(1-75:93) Ribosomal protein l38e, putative n=5 Tax=Plasmodium RepID=B3L5A8_PLAKH E=2e-07 s/c=0.76 id=43% cov=97% MPKQITDIRKFLKISRKPDTTAVIImkkksktKKNTIITKLKLRTKKYLYTMVFSDRKKAERIENSLLPSLKRI--- >UniRef50_D2W450(128-200:211) Predicted protein n=2 Tax=Naegleria gruberi RepID=D2W450_NAEGR E=3e-08 s/c=0.82 id=33% cov=99% -PKQILNVKEFLALAVAAKEKgSITLYKSKDrknrSYKFKLRTRQYLYTLKMKNKVKAQQLEKALPPTLKKSYI- >UniRef50_A2E8L9(1-66:93) 60S ribosomal protein L38-1, putative n=1 Tax=Trichomonas vaginalis RepID=A2E8L9_TRIVA E=2e-07 s/c=0.87 id=32% cov=90% MPKQVLTARQFVERCMAPDAKNVVIlRVNDETAKFKLKTTKQLYTLTVKKGELIQQVIDSLPE-------- >UniRef50_Q22SV3(1-78:89) Putative uncharacterized protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q22SV3_TETTH E=3e-06 s/c=0.67 id=35% cov=101% MPKEITDIKKFMKLwqnnkdtpATAGAKKVVYVKTNKRITKFKLRGKKYLYTFKTADPKIAKGIKDAIPATYSKIEIK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 2949 0 0 P 2 2458 * * * * * * * * * * * 290 * * * * * * * 2 0 * * * * * * 3068 0 0 R 3 * * * * * * * * 664 * * * * 3928 1992 * * 4264 * * 3 0 * * * * * * 3068 0 0 E 4 * * * 1315 * * * * 4906 * * * * 1002 * * 3928 * * * 4 0 * * * * * * 3068 0 0 I 5 * * * * * * * 581 * 2994 * * * * * * * 2279 * * 5 0 * * * * * * 3068 0 0 K 6 * * * 4906 * * 4877 * 2572 2794 * * * 3008 4488 4789 1268 * * * 6 0 * * * * * * 3068 0 0 E 7 * * 1055 2267 * * * * * * * 3955 * * * 3928 2468 * * * 7 0 * * * * * * 3068 0 0 V 8 3649 * * * 3804 * * 1179 * 2303 * * 4191 * * * * 2739 * * 8 0 * * * * * * 3068 0 0 K 9 * * * * * * * * 405 * * * * * 2030 * * * * * 9 0 * * * * * * 3068 0 0 D 10 * * 1780 1999 * * * * 2214 * * * * 2389 * * 4264 * * * 10 0 * * * * * * 3068 0 0 F 11 * * * * 203 * * 3804 * * * * * * * * * * * 4064 11 0 * * * * * * 3068 0 0 L 12 * * * * * * * 4264 * 385 3953 * * * * * * 3088 * * 12 0 * * * * * * 3068 0 0 N 13 2113 * * 2401 * * 4789 * 2288 2821 * 2792 * * * 4245 * * * * 13 0 * * * * * * 3068 0 0 K 14 * * * * * * * 3123 4009 1259 * * * * 3649 * 1911 4064 * * 14 96 3953 * 3000 193 * * 3068 1000 0 A 15 1231 2383 * * * * * * * 2928 4245 * * * * 3052 3689 * * * 15 0 * * * * * * 3068 0 0 R 16 4191 * * * * * * * 2441 * 3649 * * * 1183 3159 3953 3955 * * 16 0 * * * * * * 3068 0 0 R 17 2260 * * * * 4245 * * 3867 * * * * * 741 3804 * * * * 17 0 * * * * * * 3068 0 0 S 18 2522 * 3928 * * 2877 * * 2479 * * * 1985 4264 * 2836 * * * * 18 0 * * * * * * 3068 0 0 D 19 3953 * 422 4245 * * * * 3955 * * * * * * 3804 * * * * 19 0 * * * * * * 3068 0 0 A 20 848 * * 3955 * * * 3804 3953 * * * * * * * 3867 2512 * * 20 78 4245 * 3322 152 * * 3068 1000 0 R 21 * * * 3928 * * * * 632 * * * * * 2180 * 3867 * * * 21 96 3955 * 0 * * * 3068 1000 0 A 22 2534 4434 * * * * * * * * * 2916 * * 4488 1276 3802 3953 4191 * 22 0 * * * * * * 3068 0 0 V 23 3190 * * * * * * 3955 * 4245 * * * * * * * 371 * * 23 0 * * * * * * 3068 0 0 K 24 4264 * * * * * * 3867 1907 * * * * * 3804 * 1815 2841 * 3091 24 0 * * * * * * 3068 0 0 I 25 * * * * * * * 1282 * 3955 * * * * * * * 932 * * 25 322 2320 * 1905 448 * * 3068 1863 0 K 26 * * * * * * * * 516 * * * * * 2924 * * 4488 * 3008 26 0 * * * * * * 3068 0 0 K 27 * * * 3254 * * 4434 3802 1399 * * * * * 3669 * 2522 3649 * 3928 27 0 * * * * * * 3068 0 0 N 28 * * * * * * 4264 * 4064 * * 900 * 4488 * 1880 4789 * * * 28 0 * * * * * * 3068 0 0 P 29 3295 * 3649 * * 3804 3372 * 1393 * * * 3206 * * 3432 3867 * * * 29 66 4488 * 3459 138 * * 3068 1000 0 T 30 * * 2422 2467 * 4789 * 3867 2623 * * 3928 * * 3953 3237 3696 4264 * * 30 491 1793 * 2472 287 * * 3068 2147 0 N 31 4434 * 3928 * * * * 2185 * * * 2173 * 3190 * 3008 2924 3631 * * 31 0 * * * * * * 3068 0 0 T 32 3649 * * * * * * * * * * * * * * * 398 3367 * 3955 32 0 * * * * * * 3068 0 0 K 33 * * * * * * * * 0 * * * * * * * * * * * 33 0 * * * * * * 3068 0 0 F 34 * * * * 102 * * * * 3867 * * * * * * * * * * 34 0 * * * * * * 3068 0 0 K 35 * * * * * * * * 0 * * * * * * * * * * * 35 0 * * * * * * 3068 0 0 I 36 * * * * * * * 2359 * 1378 * * * * * * * 1250 * * 36 0 * * * * * * 3068 0 0 R 37 * * * * * * * * 3649 * * * * * 120 * * * * * 37 0 * * * * * * 3068 0 0 C 38 * 984 * * * 2140 * * * * * * * * * * 1903 * * * 38 0 * * * * * * 3068 0 0 S 39 3192 * * * * * * * 2427 * * * 3928 * 3955 1184 2895 * * * 39 0 * * * * * * 3068 0 0 R 40 * * * * * * * * 1224 * * * * 3955 1096 4656 * * * * 40 0 * * * * * * 3068 0 0 F 41 * * * * 4009 * * * * * 3928 * * 3649 * 4656 * * * 410 41 0 * * * * * * 3068 0 0 L 42 * * * * * * * * * 0 * * * * * * * * * * 42 0 * * * * * * 3068 0 0 Y 43 * * * * 4245 * * * * * * * * * * * * * * 78 43 0 * * * * * * 3068 0 0 T 44 * * * * * * * * * * * * * * * * 0 * * * 44 0 * * * * * * 3068 0 0 L 45 * * * * 2173 * * * * 648 3867 * * * * * * * * 3804 45 0 * * * * * * 3068 0 0 V 46 * 3833 * * * * * 2821 2460 * * * * * * 4064 2321 1529 * * 46 0 * * * * * * 3068 0 0 V 47 * 3804 * * 3867 * * 3285 * * 3101 * * * * * 3091 934 * * 47 0 * * * * * * 3068 0 0 Q 48 2404 * 3295 3600 4877 * * * 1994 * * 3084 4064 4940 * 3867 3991 * * * 48 0 * * * * * * 3068 0 0 D 49 * * 504 * * * * * 3649 * * 2640 4191 * * * * * * * 49 0 * * * * * * 3068 0 0 K 50 2338 * * * * 3649 * * 1376 * * * 3953 3414 2484 * * * * * 50 0 * * * * * * 3068 0 0 E 51 3804 * 3755 1709 4191 3802 * * 2479 * * 4245 * * * * 3928 3008 * * 51 81 * 4191 * * * * 3068 0 0 K 52 * * * * * * * 3917 262 3327 * * * * * * * * * * 52 0 * * * * 0 * 3044 0 1000 A 53 208 * * * * * * 3649 * * * * * * * * * 4191 * * 53 0 * * * * * * 3068 0 0 D 54 3381 * 2486 1956 * * * * 2144 * * * * 2406 * 4245 * * * * 54 0 * * * * * * 3068 0 0 K 55 * * * 3804 * 3953 * * 879 4191 * * * 2794 3043 * * * * * 55 0 * * * * * * 3068 0 0 I 56 * * * * * * * 1763 * 992 * * * * * * * 2304 * * 56 0 * * * * * * 3076 0 0 K 57 * * * 1496 * * * 2655 1635 * * * * 4128 * * * 3218 * * 57 0 * * * * * * 3076 0 0 Q 58 3097 * 2694 * * 4436 * * 2766 * * 2939 * 1485 4385 * * * * * 58 0 * * * * * * 3076 0 0 S 59 2193 * * * * * * * * * * * * * * 476 4002 * * * 59 0 * * * * * * 3076 0 0 L 60 * * * * * * * 1663 * 547 * * * * * * * * * * 60 0 * * * * * * 3076 0 0 P 61 * * * * * * 4385 * * 3772 * * 186 * * * * * * * 61 0 * * * * * * 3076 0 0 P 62 3804 * * 2836 * * * * 3705 * * * 782 * * 2944 * * * * 62 0 * * * * * * 3076 0 0 G 63 * * 3648 * * 2397 * * * * * 3905 * 4499 * 1648 1736 * * * 63 0 * * * * * * 2963 0 0 L 64 * * * * * * * 2733 * 476 * * * * * * * 4235 * 3688 64 0 * * * * * * 2963 0 0 Q 65 4762 * * 2418 * * 3648 * 1301 * * 4060 * 3129 * 3104 * * * * 65 0 * * * * * * 2963 0 0 V 66 * * * * * * * 3823 1369 * * * * * 3737 * * 1098 * * 66 0 * * * * * * 2963 0 0 K 67 * * * * * * * 1367 2508 * * 3571 * 4692 * 3670 4499 2390 * * 67 0 * * * * * * 2963 0 0 E 68 4056 * 3528 1784 * * * * 2621 * * * * * 4337 4145 * 2248 * 3579 68 0 * * * * * * 2889 0 0 V 69 * * * * * * * 929 * 1779 * * * * * * * 2448 * * 69 0 * * * * * * 2889 0 0 K 70 * * * * * * * * 0 * * * * * * * * * * * 70 0 * * 0 * * * 1681 0 0 //