HHsearch 1.5 NAME c3j39i_ FAM FILE c3j39i_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j39i_.a3m DATE Sat May 4 08:42:04 2013 LENG 113 match states, 113 columns in multiple alignment FILT 33 out of 37 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.0 EVD 0.4459 0.7138 SEQ >ss_dssp CCSSCCCSCTTTCCSSSCCCCCTTCSCCSCSSCCCCSSCTTCCCSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHCHHHHHHHHHHHSCSSHHHHHHHHHH HHHHHHHHHHHHC >sa_dssp EEEEEEDCEDEEEDEEEEEEEDDCEEEEEDEEDEEEEDDEEDDDEECDEDEEDDCEEEDDCECBEDACECBEECECEEACECADEDDCDEEEADEBCEDA CEBBDEDDEEEEE >ss_pred CCCCCCCHHHHCCCCEECCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHCC >ss_conf 9642441111026833011333344542000123500100444257999999999994478899999999972844699999999610248999999999 9999999985249 >Consensus maxrtGiavGlNKGhxvtxxxxxxxxxxkxxxxxrxsxxkgxxsKrxxxvrxiIREVxGfaPYErrxmELlKxxkdKrAlKxaKkRLGthxRakxKrexl xxvxxxxrkxxxh >c3j39i_ MAVRYELAIGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREEL SNILTQLRKAQTH >UniRef50_P05745(1-99:100) 60S ribosomal protein L36-A n=58 Tax=Eukaryota RepID=RL36A_YEAST E=2e-16 s/c=0.87 id=44% cov=88% MTVKTGIAIGLNKGKKVTSMTPAP----------KISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEM NNIIAASRR---- >UniRef50_Q4FWS9(5-102:105) 60S ribosomal protein L36, putative n=13 Tax=Trypanosomatidae RepID=Q4FWS9_LEIMA E=7e-15 s/c=0.83 id=35% cov=86% ---RTGIIAGFNKGHVTTRRPRQPSPNDRLA----------VPHKHLRAVKAIIADLVGLSPLEKRVQEFLRVGKEKRALKYCKKRLGDFTAAKKKRAKM EEALRHATK---- >UniRef50_A0DT55(3-106:110) Chromosome undetermined scaffold_62, whole genome shotgun sequence n=5 Tax=Eukaryota RepID=A0DT55_PARTE E=4e-13 s/c=0.73 id=40% cov=90% ---RTGIAVGLNRGFITSSL-------TKKQLRRRPSQRKGTLGKRVLSVRKVIQEVAGLSPYEKRIIELFKTNQPkdlKKAGKLAAKRLGTNRRGKRKI ELVQNLYRAMRKQQ-- >UniRef50_A7WQH1(3-99:100) 60S ribosomal protein L36 n=1 Tax=Oxyrrhis marina RepID=A7WQH1_OXYMA E=7e-13 s/c=0.78 id=41% cov=84% ---RSGIAVGLNKGYITTLRED------------KRVNLRGRNSAGKRLVKSVITEVAGYAPYERRMMELIKIGSAatfKRCLKFAKKRLGTHKRAKKKR DMMLAVVQASRK---- >UniRef50_A9J5V1(1-94:94) 60S ribosomal protein L36 (Fragment) n=1 Tax=Pomphorhynchus laevis RepID=A9J5V1_9BILA E=2e-12 s/c=0.78 id=46% cov=84% ------MCVGRKKGFRVHKFTPKKARPSR----------SSYVSKHNKFVREIVREVVGYSPYERRAMELIKAGKDKRTVKFLKKRLGGHVRAKKKRDEL HTLIQQRKAA--- >UniRef50_B0E8W7(4-97:104) 60S ribosomal protein L36, putative n=4 Tax=Entamoeba RepID=B0E8W7_ENTDI E=7e-12 s/c=0.76 id=33% cov=84% -----GIAVGLKRGYPVHTM--------------KTAKRHYGVTKRKHVVNDVIREACGFSAYERHMMDLLRRGLDKKALKYAKKHLGTHKRGLAKRDEI QRALEAIKAAHAH >UniRef50_B7FTL3(2-95:108) 60S ribosomal protein L36 n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FTL3_PHATR E=1e-11 s/c=0.76 id=42% cov=81% --ARTGYAKGANSGHVTEQ----------RDLKPKPSSRKGKLGKRTALTRAIAREVVGLAPYERRILDMIKtggASADKRIYKFAKRRLGSHKRALQKR EDIKAV---------- >UniRef50_A2DIW6(8-92:93) Ribosomal protein L36e, putative n=4 Tax=Trichomonas vaginalis RepID=A2DIW6_TRIVA E=8e-08 s/c=0.69 id=38% cov=63% -------------------------------------------GKRVNFARKIVHELVGWQPYERHTMDLIKIERRRAARQFLKKRLGTHRRAMKKLNTL EEVVQEESLHHHH >UniRef50_A8BYA6(14-84:90) Ribosomal protein L36-1 n=2 Tax=Giardia intestinalis RepID=A8BYA6_GIALA E=3e-07 s/c=0.79 id=46% cov=50% ---------------------------------------------HQEFVKSIIQECTGMAPYEMHIIELLRMNKDRHALRYAKKRLGNIKRAKAKRDQL S------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 2016 0 0 A 2 186 * * * * * * * * * * * * * * * 3047 * * * 2 0 * * * * * * 2418 0 0 V 3 1395 * * * * * * 4205 * 3053 * * 3601 * * * * 1464 * * 3 0 * * * * * * 2586 0 0 R 4 * * * * * * 4204 * 1808 * * * * 4785 791 * * 4442 * * 4 0 * * * * * * 3061 0 0 Y 5 * * * 4564 * * * * * * * * * * * 1765 1333 * * 1909 5 0 * * * * * * 3078 0 0 E 6 * * * 3943 * 382 * * 5139 * * * 2846 * * * * * * * 6 0 * * * * * * 3206 0 0 L 7 * * * * * * * 1264 * 1603 2601 * * * * * * 4494 * 4464 7 0 * * * * * * 3261 0 0 A 8 787 3502 * * 3667 * * 3165 * * * * * * * 4754 * 3997 * 4570 8 0 * * * * * * 3261 0 0 I 9 2832 * * * * * * 3019 3526 * * * * * * * * 707 4758 * 9 0 * * * * * * 3261 0 0 G 10 * * * * * 0 * * * * * * * * * * * * * * 10 0 * * * * * * 3261 0 0 L 11 4464 * * * 2785 * * 2963 * 860 * 4570 * * 3502 * * * * * 11 0 * * * * * * 3261 0 0 N 12 * * 4754 3758 * 5233 * * 2927 * * 496 * * * 5504 * * * * 12 0 * * * * * * 3261 0 0 K 13 * * * * * * * * 420 * * * * * 2527 3664 * * * * 13 0 * * * * * * 3261 0 0 G 14 * * * * * 0 * * * * * * * * * * * * * * 14 0 * * * * * * 3261 0 0 H 15 * * * * 2924 * 507 * 4143 * * * * * * * * 5102 * 3667 15 50 * 4863 * * * * 3292 0 0 K 16 3657 * * * * * * 2468 1816 * * * 3237 * 3714 * 4641 2098 * * 16 0 * * * * 0 * 3266 0 1000 T 17 * * * * * * * * 4529 4076 * * * * * * 1255 1063 * * 17 114 * 3712 * * * * 3292 0 0 S 18 4604 * * 4353 * * 3303 * * 4777 * 3755 * * * 3259 752 * * * 18 448 * 1905 * * * 0 3016 0 1466 K 19 4180 * * * * * * * 1346 4242 * 4445 * 3924 2895 2900 3863 4334 * * 19 186 * 3046 * * * 0 2988 0 2238 I 20 * * * * 3785 * * 2965 * 3377 2854 * * * 962 * * 4284 * * 20 488 * 1801 * * * 0 2878 0 2389 R 21 * * * 1949 * * * * 3664 * * * 3088 * 2456 * 1465 * * * 21 142 * 3411 * * * 0 2557 0 2776 N 22 * * 3372 * * * * 3228 * 3547 * 3265 1754 2477 2932 * * * * * 22 328 * 2298 * * * 0 2469 0 2795 V 23 2006 * * * * * * * 2995 2174 * * 3056 2692 * * * 2955 * * 23 0 * * * * * 0 2298 0 2876 K 24 * * * * * * * * 1068 * * * 1309 3066 * * * * * * 24 217 * 2840 * * * 0 2298 0 2876 Y 25 1817 * * * * * * * * * * * * * 2032 2511 * * * 1756 25 214 * 2856 * * * 0 2145 0 2801 T 26 * * * * * * * * * * * * 1559 * 1041 * 2518 * * * 26 0 * * * * 4016 92 2028 0 2865 G 27 * * * * * 1871 * * * * * 1764 1662 3105 * * * * * * 27 0 * * * * 3012 191 2202 0 2875 D 28 * * 1581 * * * * 3108 * * * 3094 * * * 1776 2830 * * * 28 0 * * * * 1575 590 2561 0 2776 K 29 * * * * * * * * 781 * * * 3895 * 1511 * * * * * 29 201 * 2942 * * 2212 351 2940 0 2471 K 30 * * * * * * * * 1604 2468 * 1964 * * 2096 * * * * * 30 0 * * * * * 0 2854 0 2514 V 31 2202 * 4071 3427 * 3881 * 4180 * * * * * 3200 * * 4427 1506 * * 31 167 * 3193 * * * 0 2854 0 2514 K 32 * * * * * * * * 1509 1675 * * * 4206 3010 4910 3505 * * 4805 32 139 * 3442 * * 2574 265 2664 0 2654 G 33 2444 * * * * 2312 * * 1858 * * 3880 3005 * 3782 3761 * * * * 33 0 * * * * 3324 152 2611 0 2565 L 34 4404 * * 4723 * * * 3465 4265 2400 4410 * 1810 * 3859 * 4416 2890 * * 34 0 * * * * 1126 884 2692 0 2519 R 35 * * * * * * * * 1712 * * * * 4418 741 * 4334 * * * 35 0 * * * * * 0 2965 0 2109 G 36 * * * * * 3804 3498 3606 * * * * 1013 3796 3535 4334 4200 * * * 36 0 * * * * * 0 2965 0 2109 S 37 3827 * * * * 4696 * * 4503 * * 5038 * * * 650 3357 3613 * * 37 0 * * * * * 0 3140 0 2109 R 38 4503 * 4556 * 4503 * 4811 4828 4258 * * 3531 * 2953 1304 3641 * * * 4457 38 0 * * * * 2302 327 3140 0 2109 L 39 4232 4715 * * * * 4827 * 2323 2407 * * * * 1519 4776 3324 * * * 39 0 * * * * 1860 465 3217 0 1942 K 40 * * * * * * 3566 * 587 * * * * * 2789 4239 4262 * * * 40 0 * * * * * 0 3274 0 1684 N 41 * * * * * 647 * * 4919 * * 4076 * 4588 4262 2965 * * * 4405 41 0 * * * * 577 1600 3274 0 1684 I 42 3695 * * * * 4501 4951 3452 3808 4751 * * 3876 5408 2562 2704 4425 2788 * 4625 42 0 * * * * 0 * 3523 0 1000 Q 43 3799 4913 * * * * * * 3877 1546 * 4951 4064 3187 * 4857 4045 3030 * 3945 43 0 * * * * * * 3141 0 0 T 44 * * * * * 2458 4075 * * * * * * * * 1376 1422 * * * 44 0 * * * * * * 3307 0 0 R 45 3400 * * 5043 * * * * 485 * * 5109 5034 4979 3849 * * * * * 45 0 * * * * * * 3307 0 0 H 46 * * * * * 5036 1657 * 3231 * * * * 4814 971 * * * * * 46 0 * * * * * * 3211 0 0 T 47 4814 * * * * * * * 2621 3863 * 3997 * 4658 * 6082 1424 2038 * * 47 0 * * * * * * 3211 0 0 K 48 3278 * * 3727 * 5146 2961 5568 1363 4439 * 4461 * 5626 3312 5483 5638 * * * 48 0 * * * * * * 3211 0 0 F 49 3576 * * * 1178 * * * * 2439 3950 * * * * 3227 4974 3532 * * 49 90 * 4042 * * * * 3211 0 0 M 50 2875 * * * * * * 2644 * * 3760 * * * * * 4970 742 * * 50 0 * * * * 0 * 3261 0 1000 R 51 * * * * * * * * 3077 * * 3612 * 4042 574 4857 * * 4926 * 51 0 * * * * * * 3211 0 0 D 52 3615 * 1656 2559 * 4926 * * 3151 * * 4954 * * * 1979 * * * * 52 0 * * * * * * 3211 0 0 L 53 * * * * * * * 1832 * 1972 4822 * * * * * 4042 1442 * * 53 0 * * * * * * 3211 0 0 V 54 3582 * * * * * * 767 * * * 4926 * * * * * 1756 * * 54 0 * * * * * * 3211 0 0 R 55 4367 * * * * * 4461 * 4968 * * 5626 * 3544 439 * 5036 * * * 55 0 * * * * * * 3211 0 0 E 56 * * 3705 213 * * * * 4042 * * * * * * * * * * * 56 0 * * * * * * 3211 0 0 V 57 4445 4658 * * * * * 3096 * 3413 4926 * * * * * * 576 * * 57 0 * * * * * * 3211 0 0 V 58 1764 2053 * * * * * * * * * * * * * 4820 2970 2053 * 4042 58 0 * * * * * * 3211 0 0 G 59 * * * * * 90 * * * * * * * * * 4042 * * * * 59 0 * * * * * * 3211 0 0 H 60 * * * * 902 * 4314 * * 2175 4042 * * * * 5146 * * 4461 4093 60 0 * * * * * * 3211 0 0 A 61 788 * * * * * * * * * 4755 * * 4445 * 1872 3950 * * * 61 0 * * * * * * 3215 0 0 P 62 4338 * * * * * * * * * * * 243 * * 3245 * * * * 62 0 * * * * * * 3104 0 0 Y 63 * * * * 4434 * * * * 4256 * * * * * * * 5207 * 194 63 0 * * * * * * 3015 0 0 E 64 * * * 40 * * * * * * * * * 5207 * * * * * * 64 0 * * * * * * 3015 0 0 K 65 * * * * * * * * 1555 * 4551 * * 3866 954 * * * 4959 * 65 0 * * * * * * 3015 0 0 R 66 * * * * * * 2184 * * * * * * * 359 * * * * * 66 0 * * * * * * 3015 0 0 T 67 2715 * * * * 5677 * 2094 * 3024 2566 * * * * * 2793 2665 * * 67 0 * * * * * * 3015 0 0 M 68 * * * * * * * 2140 * 3366 1162 * * 4256 * 4804 3139 5171 * * 68 0 * * * * * * 3015 0 0 E 69 * * 2350 315 * * * * * * * * * * * * * * * * 69 0 * * * * * * 3015 0 0 L 70 * * * * 4256 * * * * 181 3925 * * * * * * * * * 70 0 * * * * * * 3015 0 0 L 71 * * * * 4493 * * 1452 * 761 * * * * * * * * * * 71 0 * * * * * * 3015 0 0 K 72 * * * * * * * * 463 * * * * * 1864 * * * * * 72 51 4860 * 1585 585 * * 2999 1000 0 V 73 3983 * * * * * * 2390 * * 4585 2492 * * 4369 4817 3237 1571 * * 73 0 * * * * * * 2999 0 0 S 74 5152 * 4782 4228 * 1082 * * * * * 3548 * * * 1625 * * * * 74 151 3333 * 1585 585 * * 2999 1734 0 K 75 2895 * * * * 5055 * * 1065 3540 * * * 3331 3508 3568 * * * * 75 0 * * * * * * 3061 0 0 D 76 3568 * 941 2158 * * * * * * * * 4384 4995 4125 * 4873 * * * 76 205 2919 * 1585 585 * * 3061 1695 0 K 77 * * * * * * * * 152 * * * * * 3321 * * * * * 77 0 * * * * * * 3061 0 0 R 78 4125 * * * * * 4548 * 3355 3818 * * * * 451 * * * * * 78 0 * * * * * * 3061 0 0 A 79 318 4899 * * * * * 3858 * * * * * * * 4873 4034 * * * 79 0 * * * * * * 3061 0 0 L 80 * * * * * 4384 * * * 555 * * * * 2537 * * 5062 * 3858 80 0 * * * * * * 3061 0 0 K 81 * * * * * * * * 203 * * * * 4125 3759 * * * * * 81 0 * * * * * * 3061 0 0 F 82 * * * * 1117 * * * * 2478 * * * * * * * 2979 * 2105 82 0 * * * * * * 3061 0 0 L 83 858 4183 * * * 4299 * 2562 * 2931 * * * * 4568 * * * * * 83 0 * * * * * * 3061 0 0 K 84 4384 * * * * * * * 136 * * * * 4568 * * * * * * 84 0 * * * * * * 3061 0 0 R 85 * * * 3145 * * * * 647 * * * * * 2009 * * * * * 85 0 * * * * * * 3061 0 0 R 86 * * * * * * 4327 * 2220 * * * * * 443 * * * * * 86 0 * * * * * * 3061 0 0 L 87 * * * * * * * 3877 * 408 * * * * * * * 2490 * * 87 0 * * * * * * 3061 0 0 G 88 * * * * * 0 * * * * * * * * * * * * * * 88 0 * * * * * * 2880 0 0 T 89 * * 4054 * * 3917 4470 * * * * 4376 * * * 3305 558 * * * 89 0 * * * * * * 2880 0 0 H 90 * * * * 3075 * 697 3148 * 4164 * 4298 * * * 4470 * * * * 90 0 * * * * * * 2880 0 0 I 91 * * * * * 4066 * 3997 1573 4214 3844 * * 3668 2430 * 3473 3975 * * 91 0 * * * * * * 2880 0 0 R 92 3415 * * 4470 * * * * * * * * * * 216 * * * * * 92 0 * * * * * * 2880 0 0 A 93 522 * * * * 2407 * * * * * * * * * 4470 3844 * * * 93 0 * * * * * * 2880 0 0 K 94 * * * * * * * * 284 3130 3957 * * * * * * * * * 94 0 * * * * * * 2880 0 0 R 95 2031 * * * * 5315 * * 1673 * * * * 4701 1535 * 4917 * * * 95 0 * * * * * * 2904 0 0 K 96 * * * 3754 * * * * 111 * * * * * * * * * * * 96 0 * * * * * * 2904 0 0 R 97 * 3720 * * * * * 3641 4715 3971 4938 4917 * * 789 * 4795 4021 * * 97 0 * * * * * * 2904 0 0 E 98 3959 * 1910 726 * * * * * * * 3941 * * * * * * * * 98 0 * * * * * * 2907 0 0 E 99 * * 3138 1063 * * 3719 4788 3959 4146 4870 * * 3727 * * 3941 * * * 99 0 * * * * * * 2907 0 0 L 100 * * * * * * * 2370 * 1150 1740 * * * * * * 4146 * * 100 41 5144 * 0 * * * 2907 1000 0 S 101 3108 * * 2950 * 4996 4929 * 3758 4870 4864 4970 * 2348 * 1957 4011 * * * 101 0 * * * * * * 2907 0 0 N 102 3199 * 5116 2396 * 4946 * * 4683 * * 1377 * * 3497 4305 3705 * * * 102 57 4683 * 0 * * * 3061 1000 0 I 103 2449 * 4937 * 3649 * * 2394 * 3418 * * * * * * * 1249 * * 103 0 * * * * * * 3061 0 0 L 104 * * * * * * * 1995 * 1441 3927 4486 * * * * * 2585 * 3267 104 0 * * * * * * 3138 0 0 T 105 2110 * * 3230 * * * * * * 3614 * * 2490 1695 4199 4690 * * * 105 0 * * * * * * 3117 0 0 Q 106 1855 * * 2685 * * 3338 * 2288 4386 * * * 2714 * 3962 * * * * 106 0 * * * * * * 3117 0 0 L 107 2626 * * 3971 * * * 3318 5072 4690 2254 * * 2924 3137 2734 * * * * 107 0 * * * * * * 3117 0 0 R 108 * * * * * * * * 2454 * * * * * 647 3234 3785 * * * 108 0 * * * * * * 3071 0 0 K 109 2553 * * * * * * * 965 3009 * * * * 2373 * * * * * 109 0 * * * * * * 2866 0 0 A 110 847 * * * * * 3116 * 3699 * * * * 3439 3547 3759 * * * * 110 0 * * * * * * 2660 0 0 Q 111 1341 * * * * * 1804 * * * * * * 1649 * * * * * * 111 0 * * * * * * 2509 0 0 T 112 2279 * * * * * 2077 * * * * * * * * * 844 * * * 112 0 * * * * * * 2267 0 0 H 113 * * * * * * 0 * * * * * * * * * * * * * 113 0 * * 0 * * * 1933 0 0 //