HHsearch 1.5 NAME c3j38V_ FAM FILE c3j38V_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j38V_.a3m DATE Sat May 4 08:38:48 2013 LENG 82 match states, 82 columns in multiple alignment FILT 27 out of 31 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.9 EVD 0.4392 1.1889 SEQ >ss_dssp CEETTTEECSSCCCCBCTTTCCBCCTTCCSCEEEEECCBCTTSSCBCSCCEEEEECHHHHHTTCHHHHHHHHHHHHTSSCCC >sa_dssp EEDEEDEEEEEEECDDBDDCEDECDEECEDCDDDDDDCDDEEEEEEDEDDCDBCBBACCDEEDDCEDBCDECBDEDEEDEED >ss_pred CCCCCCCEEEEEECCCCCCCCCEECCCCCEEEEEEEEHCCCCCCEECCCCCEEEEEHHHHHCCCCHHHHHHHHHHHCCCCCC >ss_conf 9565667884643553234586755556517898700106678777588521674037752486358999999870877899 >Consensus MqNdxgxxVDlYIPRKCSaTnrlIxaKDHasVQInvxxvdxxxgxxxgxxxtxaixGxiRxxGesDxalxrLxxxxgxxxkn >c3j38V_ MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVVDVDPETGRQTDGSKTYAICGAIRRMGESDDSILRLAKADGIVSKN >UniRef50_A0BWW0(1-78:147) Chromosome undetermined scaffold_133, whole genome shotgun sequence n=3 Tax=Paramecium tetraurelia RepID=A0BWW0_PARTE E=1e-07 s/c=0.74 id=36% cov=95% MINDEKQVVDIYVPRKCQYTNMILNSSDYSSVQINVGQVD-ENGVYNKKNNTVILAGYLRQKGQSAAALEAILRQRGV---- >UniRef50_B0ET03(7-83:86) 40S ribosomal protein S21, putative n=2 Tax=Entamoeba RepID=B0ET03_ENTDI E=5e-07 s/c=0.72 id=39% cov=90% --------IELYIPRHCSVTHTLIAADDHAAVQILIPHVN-ENGVILPESTVYTVKGSVRKDGISDHSLNRQFQKDGflktVVPKN >UniRef50_Q3E902(1-80:85) 40S ribosomal protein S21-2 n=7 Tax=Eukaryota RepID=RS212_ARATH E=1e-28 s/c=1.59 id=43% cov=99% MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLD-ANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAK- >UniRef50_A4HUY7(127-204:293) 40S ribosomal protein S21, putative n=5 Tax=Trypanosomatidae RepID=A4HUY7_LEIIN E=2e-27 s/c=1.58 id=43% cov=96% MFNEEGENVDLYIPRKCHATNTLIEAHDHAAVQISIANVGP-NGVINGTTTTLCIAGYLRSQGESDHAINHITIDRGIM--- >UniRef50_Q8IHS5(1-79:82) 40S ribosomal protein S21e, putative n=7 Tax=Eukaryota RepID=Q8IHS5_PLAF7 E=2e-27 s/c=1.56 id=44% cov=98% MFNDQKVLVDIYIPRKCSATSRLIPAKEHGAVQINVGMVD-ANGVYNGKTETFAISGHVRQNGESDACLNRLMYEKKLLS-- >UniRef50_B6KBF4(1-78:151) 40S ribosomal protein S21, putative n=3 Tax=Toxoplasma gondii RepID=B6KBF4_TOXGO E=3e-20 s/c=1.27 id=45% cov=90% MQNDEGRIVDLYIPRKCSATGRLIPAKEHGAVQINVGQVRlPRPLHRRVPRSGYQRCSASarreRRLSKPSDARERTA--------- >UniRef50_Q98SD3(1-74:82) 40S ribosomal protein S21 n=1 Tax=Guillardia theta RepID=Q98SD3_GUITH E=1e-17 s/c=1.22 id=36% cov=91% MNSTNKKIVGEYIPRKCSLSNKLINNKDHASIQISIGVLDKND-LFKGEYDIFAFSGLMRKKGKSDYAIVNLIEK------- >UniRef50_A8B484(8-88:89) Ribosomal protein S21 n=2 Tax=Giardia intestinalis RepID=A8B484_GIALA E=1e-21 s/c=1.28 id=43% cov=100% MKNSSGVVVDAYIPRKCSATNRLIGPKDHAAVQLSVARVNDKGKMIENNYVTFAFCGAIRSRGGVDSAFMLLAQEHGLMER- >UniRef50_A9BL43(12-80:83) Rps21 n=1 Tax=Cryptophyta RepID=A9BL43_9CRYP E=5e-15 s/c=1.19 id=43% cov=85% -----------YIPRKCSFSNQILTSKDHSSIQISIQALNL-NGISLRKNKTYAINGKIRRKGISDLALNLLTEETDFLQK- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 86 * * * * * * 4111 * * 1 0 * * * * * * 2688 0 0 Q 2 * * * * 2906 * * 3039 2964 * * 3557 * 911 * * * * * * 2 0 * * * * * * 2776 0 0 N 3 * * * * * * * * * * * 123 * * * 3614 * * * * 3 0 * * * * * * 2849 0 0 D 4 4591 * 955 1752 * * * * * * * * * * * 3962 3614 * * * 4 0 * * * * * * 2849 0 0 A 5 1797 * 4688 1618 * * * * * * * 3106 * 3218 * 3012 * * * * 5 0 * * * * * * 2859 0 0 G 6 * * * * * 417 * * 1993 * * * * * * * * * * * 6 0 * * * * * * 2859 0 0 E 7 * * 3880 1671 * 4251 * * 3700 * * * * 2205 3859 * * 2301 * * 7 0 * * * * * * 2859 0 0 F 8 * * * * 1995 * * 2778 * 2511 5111 2274 * * * * 4764 2687 * * 8 0 * * * * * * 2859 0 0 V 9 * * * * * * * 4095 * 4521 4335 * * * * * 5069 289 * * 9 0 * * * * * * 2970 0 0 D 10 * * 391 3026 * 3939 * * * * * 4335 * * * * * * * * 10 0 * * * * * * 2970 0 0 L 11 4268 * * 3939 * * * 2251 * 572 * * * * * * * * * * 11 0 * * * * * * 2970 0 0 Y 12 * * * * * * * * * * * * * * * * * * * 0 12 0 * * * * * * 3024 0 0 V 13 * 4422 * * * * * 760 * 4579 * * * * * * * 1640 * * 13 0 * * * * * * 3024 0 0 P 14 * * * * * * * * * * * * 0 * * * * * * * 14 0 * * * * * * 3024 0 0 R 15 * * * * * * * * 4389 * * * * * 71 * * * * * 15 0 * * * * * * 3024 0 0 K 16 * * * * * * 4200 * 142 * * * * * 4659 * * * * * 16 0 * * * * * * 3024 0 0 C 17 * 0 * * * * * * * * * * * * * * * * * * 17 0 * * * * * * 3024 0 0 S 18 3269 * * * * * 3896 * * * * * * 4090 * 376 * * * * 18 0 * * * * * * 3024 0 0 A 19 991 * * * 4382 * * * * 4012 * * * * * 3030 4579 3411 3840 4090 19 0 * * * * * * 3024 0 0 S 20 * * * * * * * * * * * * * * * 1608 573 * * * 20 0 * * * * * * 3024 0 0 N 21 * * * * * 2933 4200 * 4422 * * 579 * * * 3340 * * * * 21 0 * * * * * * 3024 0 0 R 22 * * * * * * 4550 * 4012 * 4090 4846 * 4382 584 * 3526 * * * 22 0 * * * * * * 3024 0 0 I 23 * * * * * * * 1267 * 775 * * * * * * * * * * 23 0 * * * * * * 3024 0 0 I 24 * * * * * * * 163 * 3229 * * * * * * * * * * 24 0 * * * * * * 3024 0 0 G 25 3655 * * 3373 * 2372 3742 * * * * 3050 2863 * 4781 * 1935 * * * 25 0 * * * * * * 3024 0 0 A 26 750 * * * * * * * * * * 4012 3591 * * 2200 * 4550 * * 26 0 * * * * * * 3024 0 0 K 27 * * 4200 * * * 4948 * 347 * * * * * * 4090 4901 * * 4846 27 0 * * * * * * 3024 0 0 D 28 * * 261 2595 * * * * * * * * * * * * * * * * 28 0 * * * * * * 3024 0 0 H 29 * * * * * * 137 * 4885 * * * * * * * * * * 4144 29 0 * * * * * * 2940 0 0 A 30 668 * * * * 2402 * * * * * * * * * 2830 4621 * * * 30 0 * * * * * * 2940 0 0 S 31 1592 * * * * * * * * 4351 * * * * * 692 * * * * 31 0 * * * * * * 2940 0 0 I 32 * * * * * * * 1389 * * * * * * * * * 694 * * 32 0 * * * * * * 2940 0 0 Q 33 * * * * * * * * * * * * * 0 * * * * * * 33 0 * * * * * * 2940 0 0 M 34 * * * * * * * 370 * 2752 3684 * * * * * * * * * 34 0 * * * * * * 2940 0 0 N 35 3380 * 4930 * * * * * * 4056 * 785 * 4645 * 2390 * * * * 35 0 * * * * * * 2940 0 0 V 36 * * * * 3780 * * 1324 * * * * * * * * * 922 * * 36 0 * * * * * * 2940 0 0 V 37 1634 * * * * 1257 * * * * * * 4056 4301 * * * 2751 * * 37 0 * * * * * * 2940 0 0 D 38 4301 * 2243 3788 * * 2280 * 4621 * 3364 3336 * 3101 4396 * * 4086 * * 38 63 * 4544 * * * * 2940 0 0 V 39 * * * * * * * * * 1825 * * * * * * * 478 * * 39 0 * * * * * 0 2907 0 1000 D 40 * * 669 * * 4855 * * * * * 2017 * * 3980 5266 * * * * 40 890 3980 1332 0 * 0 * 2907 1000 1000 P 41 3985 * 3727 * * * 3594 * 3518 3709 * * 1172 * 2827 * * * 5060 * 41 234 * 2741 * * 0 * 2860 0 2224 E 42 2545 * * 1686 * * * * 3615 * 4445 3263 * * 3975 4544 3865 3169 * * 42 0 * * * * 0 * 2947 0 1544 T 43 * * 3288 * * 3591 * * * * * 1179 3555 * * 5676 1897 * * * 43 88 * 4086 * * * * 2940 0 0 G 44 * * * * * 320 * * 4226 4003 * * * * 4708 * * 4472 * * 44 0 * * * * 0 * 2855 0 1000 R 45 * * * * * * 4059 4301 * 2452 3591 * * * 2011 * * 1578 4621 * 45 0 * * * * * * 2940 0 0 Q 46 * * * * 2169 * * 2500 * 4905 2747 * * 5225 3555 4301 * * * 1965 46 0 * * * * * * 2940 0 0 T 47 * * 5475 3784 * * * 3323 4086 2646 * 1951 4816 * 4059 4885 2334 * * * 47 0 * * * * * * 2940 0 0 D 48 * * 5225 4351 * 763 * * 4144 * * 4396 3058 * 4301 * * 4059 * * 48 0 * * * * * * 2940 0 0 G 49 * * * 2178 * 2973 5788 * 2860 * * 4279 3856 2083 5386 * 3115 * * * 49 0 * * * * * * 2967 0 0 S 50 * * * * 2241 * * * 4973 * * 2718 * 5198 3856 2032 3035 * * 2818 50 60 4614 * 0 * * * 2967 1000 0 K 51 * * 4084 3403 * * * * 2224 * * 4080 * * * 2364 1610 4279 * * 51 0 * * * * * * 2967 0 0 T 52 4783 * * * * 3856 * 4084 * * * 3650 * * * * 619 3254 * * 52 88 4081 * 0 * * * 2967 1333 0 Y 53 * * * * 1252 * * * * 3191 * * * * * * * 4080 * 1281 53 0 * * * * * * 2967 0 0 A 54 937 3863 4614 * * 5214 * 4080 * * * * 4003 3138 * * 4105 4379 * * 54 66 * 4489 * * * * 2967 0 0 I 55 * * * * 3115 * * 1360 * 1617 4736 * * * 3786 * * 4081 * * 55 0 * * * * * 0 2923 0 1000 C 56 2099 1564 * * * 4320 * * 4081 * * 4203 * * * 1916 * * * * 56 0 * * * * * 0 2923 0 1000 G 57 * * 4374 * * 186 * * * * * * * * * 3786 * * * * 57 0 * * * * 0 * 2923 0 1000 A 58 2124 * * * 2476 * 3353 * 4275 4084 * * * * * 3337 * 4420 * 2079 58 0 * * * * * * 2967 0 0 I 59 * * * * * * * 1475 * 2536 4084 * * * * 3856 5788 1636 * * 59 103 3856 * 2000 415 * * 2967 1000 0 R 60 * * * * * * * * * * * * * * 0 * * * * * 60 66 * 4489 * * * * 2967 0 0 R 61 3029 * 4736 * * * * * 3051 * * * * 2142 1607 2604 * * * * 61 0 * * * * * 0 2923 0 1000 M 62 * * 4081 * * * * * 1853 2421 2662 5143 * 2358 3379 * * * * * 62 0 * * * * 0 * 2923 0 1000 G 63 3620 * * * * 314 * * * * * * * * * 3127 * * * * 63 0 * * * * * * 3086 0 0 E 64 * * 3203 1041 * 4210 4461 3231 2875 * * * * 3987 * * * * * * 64 0 * * * * * * 3086 0 0 S 65 3523 * * * * 3215 * 4574 * * * * 3801 * * 649 * 4210 * * 65 0 * * * * * * 3086 0 0 D 66 3987 * 369 4465 * * * * * * * * * 4461 * 3801 * * * * 66 0 * * * * * * 3086 0 0 D 67 2580 * 1386 * * * 2924 * * 4364 4549 * * * * 2620 * * * 3952 67 0 * * * * * * 3086 0 0 S 68 993 2306 * * * 3566 * * * * * * * * * 2245 * * * * 68 0 * * * * * * 3117 0 0 I 69 * * * * 3348 * * 1576 * 1405 4926 * * * 3088 * * 4703 * * 69 0 * * * * * * 3117 0 0 L 70 * * 3848 2851 * * * * * 3071 4204 1271 * * * * 4508 2641 * * 70 0 * * * * * * 3117 0 0 R 71 3172 * * * * * 3598 * * 3262 4444 3886 * * 765 * * * * * 71 0 * * * * * * 3117 0 0 L 72 * * * * * * * 3131 * 417 * * * 4046 * * 3712 * * * 72 0 * * * * * * 3074 0 0 A 73 1091 * * * 4046 * * 3829 * 2746 4854 * * * * * 3378 4467 3744 * 73 0 * * * * * * 3074 0 0 K 74 * * * 2451 * * 3549 3413 2728 * * * * 1631 3694 * * 4340 * 4737 74 0 * * * * * * 2977 0 0 A 75 3088 * 4382 2049 * * * * 1360 * * * * 3694 4340 4445 5030 * * * 75 0 * * * * * * 2977 0 0 D 76 * * 1840 3515 * * 3781 * 2064 * * 3099 * * 2884 * 3854 * * * 76 0 * * * * * * 2868 0 0 G 77 * * 3796 * * 689 * * 2304 3935 * * * * * 4655 * * * * 77 115 3711 * 2000 415 * * 2854 1000 0 I 78 * * * * 3796 * * 2139 3935 2612 2701 * 3427 * * * * 2150 * * 78 0 * * * * * * 2854 0 0 V 79 * * * 3897 * * * 2112 * 1747 2757 * * * * * * 1969 * * 79 0 * * * * * * 2730 0 0 S 80 2986 * * 3421 * * * * * * * * 2181 3360 * 1113 * * * * 80 0 * * * * * * 2664 0 0 K 81 * * * * * * * * 549 * * * 3196 * 2269 * * * * * 81 0 * * * * * * 2471 0 0 N 82 * * 2759 * * * * * * * * 231 * * * * * * * * 82 0 * * 0 * * * 1911 0 0 //