HHsearch 1.5 NAME c3j21l_ FAM FILE c3j21l_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j21l_.a3m DATE Wed Jan 9 17:42:39 2013 LENG 77 match states, 77 columns in multiple alignment FILT 48 out of 52 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.5 EVD 0.4841 2.1735 SEQ >ss_dssp CCCCEEEEEEEEEETTEEEEEEEEEECSSHHHHHHHHHHHHHHHTTCCTTSEEEEEEEEECTTCCSSHHHHHHTTCC >sa_dssp EDDCABCACBDADCEEEEDEBDCACCCDDEECADEDACECBCEDDECEEEDBECDDCEDCDCECBEDEEBCEDBEEE >ss_pred CEEEEEEEEEEEEECCCEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCHHHEEEEEEEECCHHHCCCHHHHHHHHCC >ss_conf 91589999999981895176799997379889999999997652398810069999886496660226677653049 >Consensus mxvKxfxIxgxxxxxxxxxxfxKexraxxxxxAvexxYsexgsrHrxkrxxIxIxxVxeIxxeevkxxxvkqlxxxx >c3j21l_ MKVKVFRVHGYFEKNGRKFKFTKEYRGIKEEDVKELVYSDIGSKHKVKRNKIFIKEIKEIRPEEAEDIVVRRLSLEL >UniRef50_Q8PYQ2(4-60:61) 50S ribosomal protein LX n=4 Tax=Methanomicrobia RepID=RLX_METMA E=5e-06 s/c=0.92 id=38% cov=75% --MKSFIVKGKFKAGNSWEKFTKKIESQNEKNATDKTYSIFGSKHGVKRSQIQIESVAE------------------ >UniRef50_Q98S89(69-138:159) 60S ribosomal protein L18A n=1 Tax=Guillardia theta RepID=Q98S89_GUITH E=0.0006 s/c=0.65 id=21% cov=92% --VKTYGIWSKVKIKNGYVNLFKEYRDFMMTGAVEQFYIELGGRFKIKPKDVTILRVERIKEIESSKSNVKQ----- >UniRef50_B3L8I6(79-151:184) 60S ribosomal subunit protein L18, putative n=13 Tax=Apicomplexa RepID=B3L8I6_PLAKH E=7e-12 s/c=0.98 id=22% cov=96% LRVKNYGVLLRYDSRTGTHNMYKEFRDTTKEGAISQLYSEMAGRHRARASSISIIRISEISPKLVRRPHIKQM---- >UniRef50_B9LUU5(1-56:58) 50S ribosomal protein LX n=8 Tax=Halobacteriaceae RepID=RLX_HALLT E=8e-09 s/c=1.10 id=32% cov=74% --MSTYTVTGQFQSRDGFQPFTKDVEAENEDLARERIYTTVGSQHNRKRPQIEIKEVS------------------- >UniRef50_A2BN58(3-79:87) 50S ribosomal protein LX n=4 Tax=Desulfurococcales RepID=RLX_HYPBU E=6e-08 s/c=0.76 id=36% cov=96% -EVKFYLVEGRMLIRhdrmPEWWKFRKYVRALKPEHAVEKVLSELGSNHKVKRYHVKIERVVEVPPEEVPDRTLLVLA--- >UniRef50_B0WX74(254-314:345) Ccr4-not transcription complex n=1 Tax=Culex quinquefasciatus RepID=B0WX74_CULQU E=1e-10 s/c=1.11 id=26% cov=49% ------------------------------------VLGDMASRHRVQGHSVQIIKVESVEASENRRQAVSRL---- >UniRef50_Q8SRD7(73-147:173) RIBOSOMAL PROTEIN L18A (L20 in yeast) n=1 Tax=Encephalitozoon cuniculi RepID=Q8SRD7_ENCCU E=8e-12 s/c=0.95 id=17% cov=86% -EVQNYGIRFVYRSRSGVHNAYKECRAISKCWAIDHVLRELAGRQKLKRSAVDIISVDVVPVESLK----------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * 1938 618 * * * * * * 3516 * * 1 0 * * * * * * 3239 0 0 K 2 * * * 1381 * * * 3492 1590 * * 3698 * 4170 4004 * * * * * 2 0 * * * * * * 4082 0 0 V 3 * * * * * * * 3799 4745 * 2997 4617 * * * * 3477 655 * * 3 0 * * * * * * 4512 0 0 K 4 * * * * * * * * 172 * * * * 3843 * 4546 * * * * 4 0 * * * * * * 4606 0 0 V 5 * * * * 4081 * * 2793 * * * 1363 * * * 4835 2112 2823 * * 5 0 * * * * * * 4606 0 0 F 6 * * * * 983 * * 4931 * * * * * * * * * * * 1116 6 0 * * * * * * 4709 0 0 R 7 5482 * * 2978 * 1650 * 4300 4891 5602 5319 * * 4785 2019 5312 4767 4130 * * 7 0 * * * * * * 4709 0 0 V 8 * * * * * * * 910 * * * * * * * * * 1096 * * 8 0 * * * * * * 4709 0 0 H 9 4895 * * 3860 4131 * 5786 * 2088 4804 * * * * 3179 3491 3624 3747 2349 * 9 0 * * * * * * 4709 0 0 G 10 5129 * * * 3392 818 * 3728 * 2459 * * * * * 4804 * 5992 * * 10 0 * * * * * * 4709 0 0 Y 11 3912 * * 4069 * * * 4372 3326 4904 * * * 4264 1734 5759 4033 2921 * 2962 11 0 * * * * * * 4844 0 0 F 12 4268 5333 * * 1778 * * 4932 * * 3314 * * * * * 5221 3999 * 1290 12 90 4052 * 1399 688 * * 4844 1480 0 E 13 * * 2620 4736 * * * * 2293 2654 * 5635 * 3626 3223 3399 4213 3644 * * 13 0 * * * * * * 4844 0 0 K 14 4372 4761 5358 * 4275 4932 * 3656 3345 * 3329 5643 4904 5440 4382 1583 3825 * * * 14 33 5478 * 1585 585 * * 4844 1000 0 N 15 4842 * * * * 2172 * * 2488 4758 * 2985 * * 1420 * * * * 5154 15 68 5712 5221 2000 415 * * 4844 1000 0 G 16 5133 5428 3132 3680 * 2660 * * 4753 * 5529 3173 4256 * * 1929 3142 * * * 16 50 4880 * 0 * * 0 4812 1000 1000 R 17 * * 4826 2965 * 1185 * * 3378 5102 * 4329 * * 4301 3225 5702 4482 * * 17 117 3679 * 1113 895 * 0 4812 1959 1000 K 18 * * * 5325 4983 * * 4197 3382 3564 * * 4146 * 5109 * 2401 4298 1922 3072 18 0 * * * * 0 * 4812 0 1000 F 19 * * * 5274 3846 * 1787 5750 5333 5560 3410 * * 1883 4252 * 5440 4132 5712 4904 19 0 * * * * * * 4844 0 0 K 20 4957 * * * * * * * 1921 * * 1393 2698 * 3741 * * 4287 * 4547 20 36 5348 * 2000 415 * * 4844 1000 0 F 21 5128 * * * 1034 5229 * 4185 * 4819 2172 * * * * 4113 * 5206 * 4076 21 0 * * * * * * 4844 0 0 T 22 * * * 4957 4819 * * * 4207 * * * * * 3191 4904 1502 4318 * 1591 22 0 * * * * * * 4844 0 0 K 23 * * * * * * * 4327 340 5167 * * * * 3307 * * 4993 * * 23 0 * * * * * * 5002 0 0 E 24 * * 4021 703 * * * * 5306 * * * * 4981 * * * 2754 * 3071 24 0 * * * * * * 5002 0 0 Y 25 * 5197 * * 2808 * * 3358 * 3506 * * * * 4993 * * 1975 * 1479 25 0 * * * * * * 5002 0 0 R 26 * * 5530 3007 * 5347 * 5208 4409 * * 4397 * * 679 * 4327 4915 * * 26 0 * * * * * * 5002 0 0 G 27 1099 5530 1865 3588 * 3732 5273 * * * * * * * * 5306 * 5192 * * 27 0 * * * * * * 5002 0 0 I 28 * * 4915 4164 4909 * 5680 2435 * 2262 5148 5936 3625 5306 * * 2512 2850 * * 28 0 * * * * * * 5002 0 0 K 29 * * 4915 * * * * * 2180 5800 4909 1906 * * 5636 2252 2336 * * * 29 0 * * * * * * 5002 0 0 E 30 4844 * * 1520 * * * * 3240 4031 3838 * 3378 5653 2721 5771 4891 4061 * * 30 0 * * * * * * 5002 0 0 E 31 4064 3981 3674 2169 * 6002 * * 3271 * * 3509 5273 * 3926 4915 3028 3404 * 5194 31 0 * * * * * * 5002 0 0 D 32 3774 5273 2429 3433 5680 1927 4771 * 5431 5135 * 5306 * 3227 5771 4784 * 5530 5197 5936 32 0 * * * * * * 5002 0 0 V 33 251 * * * * * * 4698 * 5247 * * * * * * * 3394 * * 33 0 * * * * * * 5002 0 0 K 34 * * * 4031 * * * 2772 3575 2539 5771 * * * 4294 * 5306 1310 * 4698 34 0 * * * * * * 5002 0 0 E 35 * * 2656 771 5208 5733 * * * * * 5273 * * 4981 3283 4342 * * * 35 0 * * * * * * 5002 0 0 L 36 3948 * * * 4784 * 5197 5591 1784 4800 5273 * * 2032 3123 5167 4683 * 5530 4292 36 0 * * * * * * 5002 0 0 V 37 3920 4842 * * 5022 * * 4071 * 2056 2402 * * * * * 3515 1778 * * 37 0 * * * * * * 4604 0 0 Y 38 * * * * 3744 * * * * 2959 * * * * * * * * * 328 38 0 * * * * * * 4604 0 0 S 39 4052 * 4818 3524 * 6155 5824 5022 * * 4676 4946 * 3186 3293 1358 3621 * * * 39 0 * * * * * * 4604 0 0 D 40 * * 2335 1111 * * * 3351 * 3231 * * * * 4302 * 3901 * * 5903 40 0 * * * * * * 4604 0 0 I 41 4703 * * * 2879 * * 2456 * 1766 1650 * * * * * * 5027 * * 41 0 * * * * * * 4604 0 0 G 42 1346 * * * * 721 * * * * * * * * * * * * * * 42 0 * * * * * * 4604 0 0 S 43 3648 * * * * 2027 * 4703 * * * * * * * 652 * * * * 43 0 * * * * * * 4604 0 0 K 44 * * * * * 5516 * * 1762 * * 3535 * 3522 1086 6068 5378 * * * 44 0 * * * * * * 4604 0 0 H 45 * 5387 * * 5022 * 393 4703 * * * 4749 * 5121 * * * * * 3656 45 0 * * * * * * 4604 0 0 K 46 5434 * 5378 * * 3195 * * 1617 * * 3901 * * 1207 5830 * * * * 46 0 * * * * * * 4604 0 0 V 47 2296 4703 * * * * * 2997 * 2211 * * * * 5027 5868 3749 1763 * * 47 0 * * * * * * 4604 0 0 K 48 * * * * * * * * 953 5488 * 5116 4038 4494 1989 5255 4350 * * * 48 0 * * * * * * 4604 0 0 R 49 3062 * * 5830 4216 6155 * * 5334 * * * 3964 4067 809 6038 * * 5745 4589 49 0 * * * * * * 4604 0 0 N 50 5434 * 4146 * * 6059 3467 * 5022 * * 2325 4200 6018 2889 1990 4538 5255 * 4091 50 0 * * * * * * 4604 0 0 K 51 5121 4761 3055 * * * 3900 * 3549 3215 * 3305 * 2430 5934 2678 6018 * * 3658 51 0 * * * * * * 4604 0 0 I 52 * * * * * * * 361 * 4532 * * * * * * * 2487 * * 52 0 * * * * * * 4604 0 0 F 53 * * 4077 4371 4256 * 3546 5745 2085 * * * * 1966 5163 3978 3220 * 5775 5198 53 0 * * * * * * 4604 0 0 I 54 * * * * 5610 * * 319 * 4946 * * * * * * * 2784 * * 54 0 * * * * * * 4604 0 0 K 55 * * 4652 2107 * * * 1568 3043 2588 5832 * * * 5252 4784 * 5426 * * 55 0 * * * * * * 4612 0 0 E 56 5033 * 4419 1957 * 4784 * * 2416 * * 3535 * * 2750 2276 * * * * 56 0 * * * * * * 4612 0 0 I 57 * * * * * * * 1352 * * * * * * * * 4483 828 * * 57 0 * * * * * * 4533 0 0 K 58 2439 * 4412 2625 * * * * 2403 * * 5563 * 4088 5171 3075 3128 4347 * 5178 58 0 * * * * * * 4555 0 0 E 59 4402 * * 692 * * * * * * * * 4634 3439 5006 4173 4048 4208 * * 59 0 * * * * * * 4544 0 0 I 60 * * * * * * * 1172 * 3101 * * * * * * * 1186 * * 60 56 4716 * 0 * * * 4528 1180 0 R 61 2062 * 3440 5802 * 4729 * * 2045 * * 5131 2822 4939 5801 2738 * * * * 61 0 * * * * * * 4527 0 0 P 62 3314 * 1973 2900 * 5289 * * * * * 4465 1621 * * 5517 4662 4225 * * 62 0 * * * * * * 4532 0 0 E 63 3711 * 3118 1026 * 5473 5389 4824 2634 * * * * * * 3742 * * * * 63 0 * * * * * * 4417 0 0 E 64 4679 * 1943 1078 * * * * 3692 4844 * 4311 * * * 4774 5158 * * * 64 32 5490 * 0 * * * 4386 1000 0 A 65 2949 5197 4654 * * * * 2699 * 3789 * 5443 * * * 3535 5283 1177 * * 65 0 * * * * * * 4378 0 0 E 66 * * * 3107 * * * * 1222 * * 4462 5335 3943 2503 4371 5159 3889 * * 66 0 * * * * * * 4735 0 0 D 67 * * 1149 4570 * * 4935 * 4119 * * 2888 * * 2079 4477 * * * * 67 0 * * * * * * 4371 0 0 I 68 * * 4400 * * * * 3632 3014 * * 4554 1056 4195 3677 4079 * 4927 * * 68 0 * * * * * * 4316 0 0 V 69 4094 * * * * * 3854 2711 * * 4280 3367 * * 4452 4369 3562 2668 * 2089 69 0 * * * * * * 4269 0 0 V 70 * * * * 4310 * * 2150 * 2188 * * * * * * * 986 * * 70 0 * * * * * * 4269 0 0 R 71 * * * * * * 4106 * 624 3493 * * * 4946 3177 4029 * * * * 71 0 * * * * * * 4269 0 0 R 72 3949 * 4434 2923 * * * * 3147 * 4369 * * 1158 4115 * * 4703 * 4280 72 85 * 4126 * * * * 4269 0 0 L 73 * * * * 3593 * * 3297 * 410 3992 * * * * * * * * * 73 0 * * * * 0 * 3737 0 1000 S 74 1776 * * * * * * * * * * * * * * 1512 1485 * * * 74 0 * * * * * * 3121 0 0 L 75 * * * * * * 1592 * * 582 * * * * * * * * * * 75 0 * * * * * * 2192 0 0 E 76 * * * 0 * * * * * * * * * * * * * * * * 76 0 * * * * * * 2192 0 0 L 77 * * * * * * * * * 678 1415 * * * * * * * * * 77 0 * * 0 * * * 1659 0 0 //