HHsearch 1.5 NAME c3j21d_ FAM FILE c3j21d_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j21d_.a3m DATE Thu Jan 10 04:56:13 2013 LENG 89 match states, 89 columns in multiple alignment FILT 44 out of 48 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.2 EVD 0.4631 1.4617 SEQ >ss_dssp CCCCSCCSSCCEEEECCTTSCCEEEECCCCCCCCBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCTTSCHHHHHHHHHHHHHHHHC >sa_dssp EEDEEEDEDBDCEECEDEEEEDDDDDCCCECEDDEBEEDEEEBEECCECBEDDDEEDDEEECDBECEDCEBBDEBCEEDDDEEEEEEEE >ss_pred CCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC >ss_conf 98653566721799887998889998216789966788786216835657667652200178665654544589999999999987409 >Consensus xRxxyxTrSnkxxxvrTPGgrlvxxyxkKxxxxpkCxxcgxxLxGixxxrpxexxxlxkxxktvsRxYGGvcsxCxxxvxxriiRAFlx >c3j21d_ MKPMYRSRSWRRKYVRTPGGRVVIHFERKKPKIAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMPHLCPRCMRKVMKEQIRAQLS >UniRef50_A8BMF7(14-90:120) Ribosomal protein L34 n=2 Tax=Giardia intestinalis RepID=A8BMF7_GIALA E=4e-07 s/c=0.72 id=36% cov=87% ----YRTRSKIVRYKRTPGNRLTSLRVKKLPNAPHCAETGKQIHGIPRVIP---QHLTRQQRKVSRPYGGkLCGSALRAHILES------ >UniRef50_A1RRJ4(3-83:84) 50S ribosomal protein L34e n=4 Tax=Thermoproteaceae RepID=RL34_PYRIL E=3e-06 s/c=0.66 id=32% cov=91% -RPAYRSRSLRRVKVRTPGGRTVVHYEKRAKGVPKCPVTNLPLGGMN----HKVYRFGISIRAPSRPYGGVfSHKVLARALRLAVR---- >UniRef50_A0D0J3(10-96:108) Chromosome undetermined scaffold_33, whole genome shotgun sequence n=6 Tax=Paramecium tetraurelia RepID=A0D0J3_PARTE E=1e-14 s/c=0.93 id=31% cov=97% -RTSYNTRSNKIRKVKTPGGNVVVQYPNKKTSASTCADSNLNvvLNGLKRIRPTKLKQLARRQRTVSRPYGGVLS--AGALKNRIIRAFL- >UniRef50_Q6E6C0(10-95:113) Large subunit ribosomal protein L34e n=1 Tax=Antonospora locustae RepID=Q6E6C0_ANTLO E=5e-14 s/c=0.92 id=28% cov=98% -RRTYNNASNQKKIRRTPGNRRVYIPKKKPGRVPKCVKCRSKLRGIDICRPAAFARLRKSQRTVARTYGGNL--CGSCLENRILDAFLS >UniRef50_Q8SSA2(11-93:110) 60S ribosomal protein L34 n=2 Tax=Apansporoblastina RepID=RL34_ENCCU E=3e-13 s/c=0.92 id=36% cov=93% ----YKTRSNRRRKVRTPSGKLVNRRVKKHSKKHRCHECNAILGSIARMRPAEFSRQKVSARRVNRPYGAT--TCGRCVREKIISAFL- >UniRef50_O14396(25-96:97) Putative uncharacterized protein (Fragment) n=1 Tax=Schizosaccharomyces pombe RepID=O14396_SCHPO E=1e-12 s/c=1.03 id=26% cov=82% ------------TVIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALVLVSLTRLSHNKKTVQRAYGGCLS---ANAVRSIVRAF-- >UniRef50_A9RCX4(1-84:102) Predicted protein (Fragment) n=3 Tax=Embryophyta RepID=A9RCX4_PHYPA E=4e-11 s/c=0.82 id=24% cov=93% ----YTTKSKQTRVVEIPSGKNVFQTATKRARGPKCPVTRKRIAGISHLRPTEYKasHLHRHRKTINRANGGTMAG--SAVRERIIQAFL- >UniRef50_Q17JY6(9-86:123) Ribosomal protein L34, putative (Fragment) n=1 Tax=Aedes aegypti RepID=Q17JY6_AEDAE E=0.0002 s/c=0.60 id=25% cov=84% ----YNT--NKRRVVRTLGSdRLVYLFIKKQRIVSKCCQCKGE---AVRNQASVHVCMCRCLKTVIRTFGGVI-----CHRERIIRAFL- >UniRef50_C7DI91(3-80:105) Ribosomal protein L34e n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI91_9EURY E=6e-11 s/c=0.88 id=36% cov=88% -KPRYRSHSFKKVQRVTKSGRNVTHYRRGKNAEPKCGICGAELNGIG-------TRGGKSRKTTSRIFGGVlCSKCTAEVVKLESR---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1532 0 0 K 2 * * * * * * * * 2332 * * * * * 319 * * * * * 2 0 * * * * * * 3614 0 0 P 3 * * * * * * 3239 * * 2708 4109 3904 1184 * 3765 * 3282 * * * 3 0 * * * * * * 3738 0 0 M 4 2565 * * * * 3742 2973 * * * 3932 * 4274 * 2766 2078 3935 5435 * 4667 4 0 * * * * * * 3842 0 0 Y 5 * * * * 2976 * 5209 * * 3642 * * * 4304 * * * * * 484 5 0 * * * * * * 4188 0 0 R 6 4014 * * * * * 5056 * 3428 * * 1439 * * 1421 4733 4831 * * * 6 0 * * * * * * 4194 0 0 S 7 * * * * * * * * * * * 3317 * * * 2151 568 * * * 7 54 * 4774 * * * * 4194 0 0 R 8 3571 * * 5520 * 3805 4574 5019 2537 * * 5756 * * 1015 4969 4957 * * * 8 0 * * * * * 0 4130 0 1000 S 9 * * * * * 4782 * * 4632 * * * 5520 * 5019 296 4155 * * * 9 0 * * * * 0 * 4130 0 1000 W 10 * * * * 3737 * * * 2917 3091 * 768 * * * 4801 * * 4265 * 10 0 * * * * * * 4194 0 0 R 11 5017 * * * * 5166 * 4497 1298 4987 * * * 2997 1753 4773 * * * * 11 0 * * * * * * 4211 0 0 R 12 * * * * 4800 * 6191 2566 2831 * 4223 * * 5000 1562 * 3162 3240 * * 12 0 * * * * * * 4238 0 0 K 13 5169 * * * * * * 4427 1731 * 4984 * * * 1570 * 3843 2425 * * 13 29 * 5633 * * * * 4317 0 0 Y 14 5207 * * * * * * 2940 2546 2681 * * 4013 4745 * * * 2410 * 2133 14 0 * * * * 0 * 4279 0 1000 V 15 * * * * * * * 4618 3304 * * * * * 2681 4336 * 616 * * 15 0 * * * * * * 4317 0 0 R 16 * * * 4842 * * * * 1467 * * * * * 821 * * 4748 * * 16 0 * * * * * * 4317 0 0 T 17 5037 * * * * * * 4842 * 3622 * * * * * * 278 5110 * * 17 0 * * * * * * 4317 0 0 P 18 5196 * * * * * * * 4748 4855 * * 150 * * * * * * * 18 0 * * * * * * 4317 0 0 G 19 * * * * * 301 * * * * * * * * * 2409 * * * * 19 0 * * * * * * 4317 0 0 G 20 * * * * * 604 * * * * * 1822 * * * 4078 * * * * 20 51 4855 * 0 * * * 4317 1000 0 R 21 * * * 5800 * * * 6131 1730 * * 3250 * * 964 5037 * 5774 * * 21 0 * * * * * * 4317 0 0 V 22 * * * * * * * 3205 5110 1146 5196 3794 * * 4573 5037 3043 3088 * * 22 0 * * * * * * 4317 0 0 V 23 4296 * * * * 4151 * 4115 4249 * * * * * 3771 * 3032 769 * * 23 0 * * * * * * 4317 0 0 I 24 3771 * * 5110 4842 * * 2302 * 5267 4905 4836 * * * 4618 4748 2291 * 1818 24 0 * * * * * * 4317 0 0 H 25 4984 * * * * * 1532 4008 * 2132 * * * 1750 4836 * * * * * 25 0 * * * * * * 4317 0 0 F 26 * * * * 3183 * 3140 * 4905 5341 * * 4573 * 3723 * 4377 4090 * 1018 26 0 * * * * * * 4317 0 0 E 27 4842 * * 2884 * * * 2672 3062 4851 * * 4222 * 2708 * 3479 2171 * * 27 0 * * * * * * 4317 0 0 R 28 5169 * 4044 * * 5165 5199 * 866 * * 4752 5881 5196 2661 * 4842 4905 * * 28 0 * * * * * * 4317 0 0 K 29 * * * * * 4748 * * 193 * * * * * 3504 * * * * * 29 0 * * * * * * 4317 0 0 K 30 4488 * * * * * 4836 5196 1346 3133 * * 4096 4293 2444 * 4071 4919 * * 30 0 * * * * * * 4317 0 0 P 31 2857 * * * * 2472 4233 4851 4982 * * 4008 2360 4101 4293 3386 3863 4983 * * 31 0 * * * * * * 4317 0 0 K 32 4748 * 4296 * * 3332 * 4855 2300 * * 3384 * 4905 3701 1949 3186 * * * 32 0 * * * * * * 4317 0 0 I 33 2811 * * 4748 5633 2475 * 3515 2628 * * * 4146 * 4459 * * 2212 * 4233 33 0 * * * * * * 4317 0 0 A 34 2222 * * * * * 3604 * * * * * 911 * * 3372 * 3740 * * 34 0 * * * * * * 4317 0 0 H 35 * * * * * * 2778 * 1099 * * * * 4984 2592 * 3863 3043 * * 35 48 4919 * 1000 1000 * * 4317 1071 0 C 36 * 147 * * * * * * * * * * * * * * 3944 4983 * * 36 0 * * * * * * 4317 0 0 A 37 1404 4855 * * * 1760 4836 * * * * * 2410 * * 5199 * 4573 * * 37 90 4905 5199 1000 1000 * * 4317 1000 0 M 38 4949 * 2171 2564 * * * 2719 3237 4857 3742 * * 4281 * 4959 * 2993 * * 38 46 4985 * 1000 1000 0 * 4258 1000 1000 C 39 * 665 * * * 3372 * * * * * * * * * 3801 2316 * * * 39 46 4984 * 0 * * * 4317 1000 0 G 40 * * * * * 953 4905 * 2289 * * 2885 4919 * 3701 * * * * * 40 0 * * * * * * 4317 0 0 R 41 2944 5196 * 4379 * 3334 * 5774 1776 3553 * * * * 3192 3485 4933 3866 * * 41 0 * * * * * * 4317 0 0 P 42 3187 * * 3801 * * * 4836 2821 5037 * 3944 2009 4618 2313 * * 4153 * * 42 107 4752 4855 1000 1000 * * 4317 1076 0 L 43 * * * * * * * 2153 * 429 * * * * * * * 4957 * * 43 0 * * * * * 0 4255 0 1000 N 44 2828 * 4384 * 5583 3872 3320 * * * * 1825 * 2596 2693 5662 * * * * 44 0 * * * * * 0 4255 0 1000 G 45 4121 * * * * 141 * * * * * * * * * 4810 * * * * 45 0 * * * * 0 * 4255 0 1000 I 46 4855 * * * * * * 956 * 3863 4982 * * * * 5341 4045 1920 * * 46 0 * * * * * * 4317 0 0 P 47 4836 * 4573 * * 4748 * * 2157 * * 4982 1618 * 3443 3121 5923 3630 * * 47 153 4984 3860 0 * * * 4317 1000 0 R 48 2466 5111 * * * 5202 3410 4510 5138 * * * 4158 * 1328 4171 3531 * * * 48 41 * 5152 * * * 0 4214 0 1515 G 49 5809 4492 * 5287 * 2778 * 3789 * 1436 3770 4708 4758 * * 3880 * 3210 * * 49 45 * 5018 * * * 0 4184 0 1852 R 50 * * * * * * * 3921 4048 * * * 4065 3691 538 * * 4391 * * 50 45 * 5038 * * * 0 4147 0 2111 P 51 3203 * * * * * 4674 * * 4258 * * 597 * 4838 4762 5179 * 4660 * 51 69 * 4418 * * 1314 742 4198 0 2272 V 52 2831 5139 * * * * 3828 * 4730 4751 * 4178 * * 3016 2576 3060 2974 * 3441 52 0 * * * * 2109 381 4268 0 2222 E 53 4417 * 4786 1196 5102 4724 * * 3384 * * * * 3182 * 4438 5112 3240 5237 * 53 0 * * * * * 0 4210 0 2011 M 54 4755 * * * 3021 * 4610 3910 * 1770 4255 3842 * * 3736 5112 * 4829 * 2491 54 0 * * * * 394 2065 4210 0 2011 R 55 3485 * * * * 5182 5256 * 2463 4913 3865 * 5887 4599 2316 3646 2926 4740 * 3922 55 91 4038 * 1000 1000 * 0 4293 1280 1000 K 56 5888 4740 * * * * 3706 * 2354 4043 * 5140 * 4296 1334 3399 6112 * 5182 * 56 0 * * * * * 0 4293 0 1000 L 57 3332 * * 4350 4932 4710 * 5179 * 978 3260 * * 4821 * 4913 * 4436 * 5256 57 0 * * * * * 0 4293 0 1000 P 58 3539 3484 * * * 3004 4822 * 3950 * * * 2810 * 2876 1837 4599 * * * 58 0 * * * * * 0 4293 0 1000 K 59 * 4913 * * * * 4590 4932 973 5179 * * * * 1643 * * 4821 * * 59 0 * * * * * 0 4293 0 1000 T 60 * 4740 * * * 5226 3851 * 4912 * * 2993 * 3975 2640 1780 2378 * * * 60 0 * * * * * 0 4293 0 1000 K 61 3502 * * 3691 * * 3987 4932 2456 3735 * 4912 * 2063 2739 * 4959 5226 * * 61 0 * * * * * 0 4293 0 1000 K 62 * * * * * * * * 952 * * * * * 1050 * * * * * 62 0 * * * * * 0 4293 0 1000 R 63 4932 * * * * * 4897 * 3341 * 5226 * * * 2114 3897 971 * * * 63 0 * * * * * 0 4293 0 1000 P 64 * * * * * * * 3285 * * * * 1971 * * * 3793 810 * * 64 0 * * * * 0 * 4293 0 1000 E 65 3742 * * 2897 * * * 4855 * * * 2546 * 3675 * 1249 3537 * * * 65 0 * * * * * * 4317 0 0 R 66 * * * * * * * * * * * * * * 0 * * * * * 66 0 * * * * * * 4317 0 0 P 67 1597 * * * * * * 3799 5535 * 4552 * 1239 * * * 3191 * * * 67 0 * * * * * * 4317 0 0 M 68 * * * * 2598 * * * * * 4509 4842 * * * * * * * 404 68 36 5325 * 0 * * * 4317 1000 0 P 69 * * * * * 65 * * * * * * 4509 * * * * * * * 69 0 * * * * * * 4317 0 0 H 70 4836 * * * * 158 5518 * * * * 5500 * * * * * * * 5325 70 666 2037 2987 0 * * * 4317 3222 0 L 71 * 5323 * * * * 4756 4504 5495 1924 4154 5292 * * * 5577 3700 1222 * * 71 407 2787 3310 0 * * 0 4430 2380 2155 C 72 * 1021 * * * * * 4546 * 1493 4603 * * * * 3879 * * * * 72 188 * 3029 * * 661 1444 4304 0 2535 P 73 2745 * * * * 3907 2975 * * * * 4734 2869 * * 1153 4925 * * * 73 106 5295 4468 2585 263 1094 912 4185 1000 2642 R 74 * * * 3789 * 2806 3823 5855 2186 * 5793 4026 * * 2195 3172 4723 * * 5043 74 347 * 2226 * * 1058 944 4231 0 2497 C 75 3982 224 * * * * * 4683 * * * * * * * * * 4593 * * 75 0 * * * * 3339 150 3963 0 2801 M 76 2524 * * * * 2662 3468 4260 * 2069 3523 * * * * * 3559 3114 * * 76 0 * * * * 201 2944 3962 0 2901 R 77 2774 * * 3765 * 4354 * * 2876 * * 3119 * 5174 1691 3191 4921 * * * 77 0 * * * * 0 * 4255 0 1000 K 78 2562 1938 5867 3580 * * 4983 * 3018 * * 4177 * 4100 3438 3640 * 5169 * * 78 22 6058 * 2585 263 * * 4317 1000 0 V 79 4279 * * * 5568 5267 4172 3520 * 2106 5037 * * * 4184 * 4851 1299 * * 79 0 * * * * * * 4317 0 0 M 80 * * * 5493 * * * 2172 2672 3460 3257 * * 5180 1749 * * 3673 * * 80 0 * * * * * * 4317 0 0 K 81 4533 * 3667 1704 * * * * 1960 5504 5812 3604 * 5749 3454 * * 3607 * * 81 0 * * * * * * 4317 0 0 E 82 3366 * * 3315 * * 5619 4948 3163 3001 * * * * 1020 5638 * * * * 82 0 * * * * * * 4317 0 0 Q 83 4837 * * 3383 * * * 797 4910 * 4334 * * 3926 * 2787 * * * * 83 0 * * * * * * 4287 0 0 I 84 2791 * * * * * * 1553 4488 3466 4359 * * * * 4646 * 1780 * * 84 0 * * * * * * 4273 0 0 R 85 * * 4884 5105 * * * * 3979 * * 4994 * 4713 485 4740 5606 4989 * * 85 0 * * * * * * 4244 0 0 A 86 369 * * * * * * * * * * 3678 * * * 2761 * * * * 86 0 * * * * * * 3951 0 0 Q 87 * * * * 278 * * * 5107 * * * * 3799 * 4840 4669 * * * 87 0 * * * * * * 3794 0 0 L 88 * * * * * * * 3659 * 327 3734 * * * * * * 4373 * * 88 0 * * * * * * 3610 0 0 S 89 * * * * * * * * * * * 2040 * * * 402 * * * * 89 0 * * 0 * * * 2143 0 0 //