HHsearch 1.5 NAME c3j21W_ FAM FILE c3j21W_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j21W_.a3m DATE Thu Jan 10 06:01:48 2013 LENG 72 match states, 72 columns in multiple alignment FILT 100 out of 125 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.6 EVD 0.4173 -0.3401 SEQ >ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC >sa_dssp DEDDEAEECDCEEADDCBEEBDEDCEEBDDEDEEDDECEEEECCDDBDEBBDCADECCEDDDDEDEECEEEE >ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 996999609999999999999999999999998314666534899999999999999999998776543149 >Consensus mkaxElRxxSxeeLxxxlxelkxELfxLRxqxatgxqlxnxxrirxvRkxIARilTVxxerxrexxxgkxxk >c3j21W_ MKPSEIREMSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKEKLREREKGKVKK >UniRef50_B3PMN9(1-69:88) 50S ribosomal protein L29 n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=RL29_MYCA5 E=4e-07 s/c=0.81 id=29% cov=97% MQYSELKQKSIKELEKMLAEYRAELFSLRFKNAT-RQLDQVHKIDLVKKDIARTLTAINEINRMTSQQQA-- >UniRef50_Q9FJP3(68-132:173) 50S ribosomal protein L29, chloroplastic n=4 Tax=rosids RepID=RK29_ARATH E=2e-05 s/c=0.77 id=23% cov=92% ---KEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEF-KSSDFRRMKKQVARMLTVKREREIKEGIKK--- >UniRef50_A7IFY9(1-70:70) 50S ribosomal protein L29 n=61 Tax=Bacteria RepID=RL29_XANP2 E=4e-08 s/c=0.85 id=28% cov=99% MKAEDVRALSPDQLADELLKLKKEQFNLRFQKATG-QLENTARSKQIRRDIARIKTVQTDKRTGAPVQKAK- >UniRef50_Q673S2(4-67:67) Ribosomal protein L29 n=7 Tax=environmental samples RepID=Q673S2_9EURY E=3e-05 s/c=0.78 id=31% cov=90% IRSRDIEKMNPEQRQRRLVELKEELLQLRAQQALGGSSSNAGAYKQTRRSIARLLTKMSEGTKE-------- >UniRef50_Q8EUC0(2-62:244) Ribosomal protein L29 n=1 Tax=Mycoplasma penetrans RepID=Q8EUC0_MYCPE E=5e-05 s/c=0.80 id=23% cov=85% LMIKELRTKTDNELGNLISKLKIQLLEMRFKIANG-EVEGLHKFKEIKKTIAMAMTVLSER----------- >UniRef50_D2RU04(4-64:74) Ribosomal protein L29 n=2 Tax=Halobacteriaceae RepID=D2RU04_9EURY E=0.0001 s/c=0.78 id=35% cov=86% LHVEEIRDMTPAEREEELEELETELLNQKSVLAAGGAPENPGRIGELGRTIARIKTIQREE----------- >UniRef50_A5GVW8(6-65:71) 50S ribosomal protein L29 n=4 Tax=cellular organisms RepID=RL29_SYNR3 E=3e-06 s/c=0.89 id=36% cov=82% ----ETRKLSDTEINEQISGTRRELFDLRFQQATS-RLENPHRFRHARVKLAQLLTVQQERER--------- >UniRef50_Q6ME55(3-69:73) 50S ribosomal protein L29 n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=RL29_PARUW E=2e-05 s/c=0.75 id=35% cov=92% -KAKDLRDQSLEELEATHDESRRKLFELNNEFRSQKKREKPHEMKHTRKDIARLLTVITEKRRENQ------ >UniRef50_Q4UIF8(23-94:142) 60S ribosomal protein L35 n=3 Tax=Theileria RepID=RL35_THEAN E=0.0002 s/c=0.66 id=25% cov=101% LRVFELRDKSDAELLKLLDDLKQELATFRVSKVTATGTSKLSKITLVRKAVAKVLTVYNQRKKEEARKKYKK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 3372 * 1988 618 * * * * * * * * * 1 0 * * * * * * 4324 0 0 K 2 * * 5420 5228 * * 6066 * 682 * 5806 3817 * 5405 2505 * 5418 * * * 2 0 * * * * * * 4708 0 0 P 3 1181 5954 * * 4045 * * 2855 5236 4305 4835 * 4427 * * 4690 4402 3685 * 5532 3 0 * * * * * * 4699 0 0 S 4 3371 * 4035 4168 4896 * 5248 * 1704 * 6509 5400 * 5077 3245 2908 4040 5919 * 4657 4 0 * * * * * * 4730 0 0 E 5 * * 2132 662 * * * * 4498 * * * * 3710 * 6644 * 6803 * * 5 0 * * * * * * 4732 0 0 I 6 6493 * * * 4820 * * 1998 * 796 4916 * * * * * 6336 3823 6501 * 6 0 * * * * * * 4737 0 0 R 7 * * 6687 6058 * * 5520 5448 2754 6566 * * * 5613 537 5765 6818 6415 5433 * 7 0 * * * * * * 4737 0 0 E 8 3155 * 2795 2246 * 3621 * * 2491 * * 3016 * 4630 * 4143 4849 5765 * * 8 0 * * * * * * 4737 0 0 M 9 6153 * * * 5905 * * * 2197 1440 1713 * * 4223 5379 * * * * * 9 8 7585 * 2000 415 * * 4738 1000 0 S 10 * * 4287 5704 * 5015 * * 5638 * * 3761 6094 * * 712 2477 * * * 10 0 * * * * * * 4733 0 0 I 11 3240 * 2447 4482 * 7036 * 3513 2887 4348 * 4077 3048 5590 6174 4867 5414 3133 * * 11 0 * * * * * * 4733 0 0 E 12 3213 * 2307 1229 * 6820 6196 * 4212 * * 5467 6094 4107 * 5309 4174 6492 * * 12 0 * * * * * * 4733 0 0 E 13 5281 * 2464 789 * 5630 * * 6718 6084 * 6779 * 2638 * * * * * * 13 0 * * * * * * 4733 0 0 I 14 6072 * * * 6304 * * 3042 * 444 5714 * * * 3550 * * 6446 * * 14 0 * * * * * * 4733 0 0 D 15 4123 * 4039 2908 * 5302 5467 5976 2888 3025 5344 3946 * 2891 4309 5185 3763 4523 * 7102 15 0 * * * * * * 4733 0 0 A 16 2617 * 3947 2016 6483 4670 * * 1991 * * 4563 * 3853 4664 5115 5226 5943 * * 16 0 * * * * * * 4733 0 0 K 17 6483 * 5312 3068 * * 5224 * 1571 2915 5887 5948 * 2680 4431 6128 3343 * * * 17 0 * * * * * * 4733 0 0 I 18 5833 7209 * 4964 * 6158 5307 2734 * 751 5060 6582 * * 5197 * * 3441 * * 18 0 * * * * * * 4733 0 0 R 19 3187 * 3151 3347 6084 4755 6686 4366 2762 4797 * 4687 * 3743 4491 4344 4238 2991 * * 19 0 * * * * * * 4733 0 0 E 20 3707 * 2378 1112 * 5522 * * 3630 7102 * 4410 * 4261 * 4598 5800 * * * 20 0 * * * * * * 4733 0 0 L 21 3850 6697 * * 4748 * * 6720 4609 575 * * * * 6304 4171 4637 6428 * 4579 21 0 * * * * * * 4733 0 0 R 22 5632 * * 5022 * 6084 6652 * 826 * 6628 5870 * 5578 1979 5330 6158 * * 5662 22 0 * * * * * * 4733 0 0 L 23 3026 * 7609 2702 * 4539 6842 5419 2016 4385 * 6935 * 3541 2761 4617 4086 7143 * * 23 0 * * * * * * 4733 0 0 Q 24 6072 * 3873 370 * * * * 4268 * 5930 * * 4889 * 6452 5066 * * * 24 0 * * * * * * 4733 0 0 L 25 5534 * * * 4928 6694 * * * 249 * * * 4117 * 6365 6680 * * 6072 25 0 * * * * * * 4733 0 0 A 26 3497 * * * 984 5331 * 4391 * 3080 3301 * * * * 4514 * 4951 5858 5628 26 0 * * * * * * 4733 0 0 K 27 4775 * 3707 3245 * 4892 5044 * 3269 6431 6455 1715 * 3478 4222 3701 4129 6843 * * 27 0 * * * * * * 4733 0 0 E 28 5984 * * 3713 6271 * * * * 321 4662 6597 * 5694 * * * 6158 * 6464 28 0 * * * * * * 4733 0 0 R 29 6102 * * 4770 * 6820 5790 * 4146 6833 6565 5332 * * 347 * * 4844 * * 29 0 * * * * * * 4733 0 0 G 30 4136 * * * 1125 4764 * 4767 * 4125 4154 5999 * * * 5541 3787 2486 * 6720 30 0 * * * * * * 4733 0 0 L 31 3214 * * 4990 * * 6861 5968 2757 4620 5521 6820 * 1097 4433 4808 5599 4961 * 6094 31 0 * * * * * * 4733 0 0 L 32 3767 * * * 5999 * 3347 4550 1805 3123 * 3824 * 2480 4473 4138 * 5852 * * 32 0 * * * * * * 4733 0 0 T 33 1081 * * 5394 * 5428 6158 5326 3563 6635 6861 * * 5131 5352 2844 5830 2963 * * 33 14 * 6686 * * * * 4733 0 0 M 34 3867 * * * * * * 4256 5796 3446 3530 5135 * * 6168 3492 1004 4242 * * 34 211 6419 3007 0 * 0 * 4728 1000 1000 G 35 3552 * 6544 6625 * 550 * * 6231 * * 5095 * 5887 3838 3920 6009 * * * 35 889 * 1120 * * 0 * 4663 0 3194 T 36 * * * 4122 * 1481 4996 * 3755 5960 4663 2862 3898 * 2974 5821 3760 * * * 36 300 * 2414 * * 0 * 4651 0 3858 S 37 2829 * * 3790 * 6103 * * 4191 * * 5323 * 1277 3842 3234 4566 4014 * * 37 50 5918 5833 1000 1000 0 * 4687 1000 3208 L 38 4095 6085 * 5612 5599 5923 6080 4436 * 823 * 5047 3061 * 5962 5270 5438 5157 * * 38 17 * 6384 * * 0 * 4698 0 1000 E 39 6281 * 3198 1340 * 4251 * * 4796 6847 * 4316 5010 4323 * 2854 3699 6618 * 5097 39 15 * 6550 * * 0 * 4717 0 1000 N 40 4790 * 5211 6009 * 5504 * * 1710 * * 1071 * 4164 5646 5014 6523 * * * 40 15 * 6620 * * 0 * 4725 0 1000 P 41 6146 * * * 6096 5909 5223 5125 * 2974 * 6075 1449 6954 * 3855 1862 4698 * * 41 0 * * * * * 0 4729 0 1000 M 42 2507 * * * 5821 2533 2155 6690 5448 * 6141 6671 * 5394 5809 1822 6369 5973 * * 42 0 * * * * * 0 4729 0 1000 V 43 4645 * 6421 3114 * * 5909 6723 2185 6414 6057 5857 * 3655 1227 5960 * 5616 * * 43 0 * * * * 0 * 4729 0 1000 I 44 * * * * 2704 * * 928 * 2852 3596 * 6685 * * 6756 * 3906 * 6154 44 0 * * * * * * 4730 0 0 R 45 * * 6078 6065 * 3216 6391 * 1625 * * 6079 3984 6462 1457 4062 6264 * * * 45 0 * * * * * * 4730 0 0 N 46 4124 * 4901 2393 6804 4736 4028 5362 3261 3754 7147 4974 6946 3122 4241 4939 3519 4067 * 6155 46 0 * * * * * * 4730 0 0 L 47 3385 6410 * * 5958 * * 2508 6698 2545 5531 4966 * * * * 3213 1481 * * 47 0 * * * * * * 4730 0 0 R 48 * * * * * 6480 6418 * 1807 * * * * * 570 5828 * * * * 48 0 * * * * * * 4730 0 0 R 49 * * * * * * 4908 5595 1040 6058 * 5743 * * 1332 * 5925 6344 * * 49 0 * * * * * * 4730 0 0 D 50 4148 * 1506 3403 * 6391 * * 4338 6155 5328 3415 * 4624 4797 3304 2997 * * * 50 0 * * * * * * 4730 0 0 I 51 6363 * * * * * * 266 * 3688 * * * * * * * 3671 * * 51 0 * * * * * * 4730 0 0 A 52 0 * * * * * * * * * * * * * * * * * * * 52 0 * * * * * * 4730 0 0 R 53 * 6628 * * * * 6485 * 4019 6625 6168 * * 3130 391 * * 5958 * * 53 0 * * * * * * 4730 0 0 L 54 4169 * * * 6241 * * 1225 * 2603 4524 * * * * 5090 4824 2115 * * 54 0 * * * * * * 4730 0 0 L 55 * * * 5106 * * 5632 * 1844 981 4862 4315 * 5839 5290 * * * * 4715 55 0 * * * * * * 4730 0 0 T 56 * * * * * * * * * * * * * * * * 0 * * * 56 0 * * * * * * 4728 0 0 I 57 4528 * * 6746 * * * 1488 6139 5585 5800 * * * * * 6532 924 * * 57 0 * * * * * * 4728 0 0 K 58 4849 6687 * 4038 6435 * 6457 2037 3825 1801 3294 * * 3656 4541 * * 5677 * 5226 58 0 * * * * * * 4722 0 0 K 59 5889 * * * * 5156 3840 * 4156 * * 1740 * 5417 1862 2687 4072 5913 * * 59 0 * * * * * * 4722 0 0 E 60 3740 * 6702 637 * * 6046 * 5863 5867 * * * 2397 6031 5783 * * * * 60 17 6400 * 2000 415 * * 4714 1000 0 K 61 4313 * * 4827 * 5865 * 6183 1484 * * 5381 * 3966 1368 6411 5573 * * 5798 61 23 * 5959 * * * * 4701 0 0 L 62 3992 * 5858 2617 * 5841 * 5848 2596 4893 * 4197 * 2241 3082 4266 4016 5317 * * 62 0 * * * * 0 * 4511 0 1000 R 63 5464 * * * * * * 3932 1957 3642 4206 4090 * * 1235 5934 5654 * * * 63 0 * * * * * * 4435 0 0 E 64 4065 * 3722 1081 * 5188 * * 3262 4930 4324 3665 * 4792 * 5149 4859 * * * 64 36 * 5332 * * * * 4286 0 0 R 65 4812 * * 2253 * 2768 * * 3580 4722 * 3684 * 5219 2874 3830 2514 * * * 65 0 * * * * 0 * 4137 0 1000 E 66 3612 * * 1896 * 2513 * * * * * 4380 4487 2709 * 3215 3812 4326 * * 66 0 * * * * * * 4048 0 0 K 67 * * * * * * * 4239 1198 * * 4677 * 3070 2749 * * 2293 * * 67 0 * * * * * * 3873 0 0 G 68 * * * * * 672 * * 2804 * * 3570 * 2785 * * * * * * 68 0 * * * * * * 3679 0 0 K 69 3120 * * 2575 * * * * 734 * * * * 3107 * * * * * * 69 0 * * * * * * 3380 0 0 V 70 709 * * * * * * * 3155 * * * * * * * * 2932 * 2784 70 0 * * * * * * 3017 0 0 K 71 * * * * * 2932 2936 * 438 * * * * * * * * * * * 71 0 * * * * * * 2831 0 0 K 72 * * * * * * * * 0 * * * * * * * * * * * 72 0 * * 0 * * * 2296 0 0 //