HHsearch 1.5 NAME c3j21U_ FAM FILE c3j21U_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j21U_.a3m DATE Fri Jan 11 00:03:35 2013 LENG 121 match states, 121 columns in multiple alignment FILT 102 out of 219 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.5 EVD 0.4146 -0.7442 SEQ >ss_dssp CCCCCCCHHHHHHHHHHCCTTGGGGGSEEEBCHHHHHHTCCSEEECCSSSEEEECSSSCSSEEEEEEEEETTTTEEEETTCEEECSSSCEEECCBCGGGE EEEECCCCCHHHHHHHHTTTC >sa_dssp EEEEDEDEEDDDDEDEEBDEEDBDEDBCACACEEBCEEDEBEDBDBCDDBDADACEDECEDDDBDADDCDCEDCDACADCABDEDEEEDECDCCBDBECB CACDBCDEDEEBDDDADEEDE >ss_pred CEEEECCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCEEEEEECCCEEEEEECCCCCCCEEEEEEECCCCEEEEECCEEEECCCCEEECCCCCEEE EEEECCCCCHHHHHHHHHHCC >ss_conf 9134368100234322086110222221522988798508525575049989998637788715899997368889994323772477555516050007 997155888779999775169 >Consensus xxxxsxxxrKxRKxxfxAxxxxrxkxmsaxLskelrxkyxirxxxIxkGDxVxVixGxxKGkxGkVxxVxxxxxxVxVegvnxxkxxxkxxexPIhxSNV xixxlxxxxxxRxxxlxxkxg >c3j21U_ MKISSKQPRKQRKFLYNAPLHVRQKLMSAPLSRELREKYKVRNLPVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNV MIIELNLEDEKRKKIIERRAG >UniRef50_Q98RW9(10-108:108) 60S ribosomal protein L26 n=1 Tax=Guillardia theta RepID=Q98RW9_GUITH E=7e-11 s/c=0.69 id=28% cov=82% -------RRKNRKRCFLNLKRKNSNIIKTNLSKEMQKYHKKKTLILKKNYEIKVKRGDFKGKTGKVIQIKPEQQKIFVDNIFRNKFEKTNIFVPLKPSNI QIIKI---------------- >UniRef50_B0X484(49-114:141) Ribosomal protein L26 n=1 Tax=Culex quinquefasciatus RepID=B0X484_CULQU E=1e-05 s/c=0.77 id=30% cov=36% ------------------------------------------------------------------------KAVVYIERIQRKRANGTNVYVGVHPFKF LIVKLKM-NKDRKRIL----- >UniRef50_C5LE50(81-160:172) 60S ribosomal protein L24, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LE50_9ALVE E=0.0002 s/c=0.59 id=34% cov=63% ----------------------------------------IRTWKVRVGDMVEIISGKDKGTQGEILQTDYRRNMVKVRGANLRRmkdKDGNDYQIekKI HYSNVNLLDPVFKKPTRVDL------ >UniRef50_B4FTJ3(25-144:192) 50S ribosomal protein L24 n=4 Tax=Andropogoneae RepID=B4FTJ3_MAIZE E=4e-13 s/c=0.63 id=33% cov=76% -----------RLATYSAPQPGVRFMVKicpieMRLKRWERKKCKPNSLPvlhkmhVRIGDTVQVIAGREKGKVGEVTRLFKHNSTVIVKDLNLKSKHKK gtddepgeivMIEGPIHSSNVML------------------- >UniRef50_Q2N9C2(3-89:106) 50S ribosomal protein L24 n=83 Tax=Bacteria RepID=RL24_ERYLH E=2e-11 s/c=0.81 id=26% cov=61% ---------------------------------------------IKKGDSVVVLSGKDKGKTGTVAKVMPKEGKVVVEGVNMIARHRKPsqenpqggid rYEAPMHIAKVAVADPKDGKPTRVRIEEK--- >UniRef50_P35872(106-182:184) Transcription antitermination protein nusG n=13 Tax=Bacteria RepID=NUSG_THET8 E=3e-05 s/c=0.64 id=29% cov=43% ----------------------------------------------REGDQVRVVSGPFADFTGTVTEINPERGKVKV----MVTIFGRETPVELDFSQV V-------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 1628 * * 1435 * * * * * * 1705 * * 1 0 * * * * * * 1581 0 0 K 2 * * * * * * * * 968 * 1715 * * * 2442 * * * * * 2 0 * * * * * * 2320 0 0 I 3 * * * * * * * 2311 * * 2248 * * 3178 3363 * 3166 1895 * * 3 0 * * * * * * 3013 0 0 S 4 * * * * * * * 3363 2172 * * * * * * 1741 2603 3313 * 3101 4 0 * * * * * * 3013 0 0 S 5 * * * * * * * * * * * * * * * 362 2173 * * * 5 0 * * * * * * 3387 0 0 K 6 * * * * * * * * 1547 * * * * * 3802 771 * * * * 6 0 * * * * * * 3387 0 0 Q 7 * * 4451 * * * * * 1798 3848 * 3142 * 1970 4212 2517 * * * * 7 0 * * * * * * 3602 0 0 P 8 2706 * * * * * * * * * * * 1304 * 1333 4479 * * * * 8 66 * 4479 * * * * 3846 0 0 R 9 * * * * * 3161 * * 3168 * * * * * 898 3414 2771 * * * 9 0 * * * * 0 * 3825 0 1000 K 10 * * * * * * * * 0 * * * * * * * * * * * 10 0 * * * * * * 3914 0 0 Q 11 3073 4511 * * * * * * 4304 * 3033 3151 * 1137 * * 4426 4304 * * 11 0 * * * * * * 3914 0 0 R 12 * * * * * * * * 4326 * * * * * 74 * * * * * 12 119 3655 * 0 * * * 4071 1295 0 K 13 * * * * * * * * 390 3219 * * * 4446 3576 * * * * * 13 0 * * * * * * 4220 0 0 F 14 1567 * * * 4034 * * * * 4537 3706 3692 * 3674 3264 4382 4464 * * 2958 14 0 * * * * * * 4220 0 0 L 15 4798 4009 * * * * 2668 3883 * 3285 4690 * * 4363 2703 4409 4049 4391 * 2489 15 0 * * * * * * 4477 0 0 Y 16 * * * * 962 * * * * * * 4437 * 4391 4798 4409 4363 * * 1936 16 0 * * * * * * 4477 0 0 N 17 4594 * 4523 5003 * * * * 4537 3370 * 3286 * 3769 3203 3397 1455 * * * 17 57 * 4686 * * * * 4664 0 0 A 18 345 4592 * * * * * * * * 4515 4073 * * * 4714 * 5058 * * 18 0 * * * * * 0 4615 0 1000 P 19 4552 * * * * * * * 3455 4073 * 3192 1167 * 4577 2897 4747 4691 * * 19 0 * * * * * 0 4615 0 1000 L 20 2800 * 4592 4577 * 3062 * 4552 3276 2845 * 4698 * 3469 * 2943 4894 4529 * 4945 20 0 * * * * * 0 4615 0 1000 H 21 4747 * 4513 4944 * 3842 1763 * 4691 * * * 4077 3825 2832 2973 4515 * * 4577 21 0 * * * * * 0 4615 0 1000 V 22 3533 * 4691 3114 * 4077 3485 4857 4073 5144 * * * 3930 * * 2880 1800 * * 22 0 * * * * 0 * 4615 0 1000 R 23 * * * 4686 * * * * 1934 * * 4083 * 3075 1103 * * 4156 * * 23 0 * * * * * * 4664 0 0 Q 24 3980 * * 4786 * * 3041 * * 4737 * * * 3266 1422 2173 * 4559 * * 24 0 * * * * * * 4664 0 0 K 25 * * * * 4156 * 4537 4594 997 4848 5014 3471 * * 4686 4827 * 2961 * * 25 0 * * * * * * 4664 0 0 L 26 4641 * * * 3206 * * 2414 * 2969 3047 3687 4686 3367 2595 * * 4784 * * 26 0 * * * * * * 4664 0 0 M 27 * * * * * * * 3471 * 2550 1264 * * * * 4594 * 2321 3621 * 27 0 * * * * * * 4664 0 0 S 28 4559 * * * * 4007 3546 * 3119 * * 3937 * * 2675 1196 * 4784 * * 28 83 4156 * 2322 322 * * 4664 1000 0 A 29 1190 * * 4774 * * * * 4642 * 3413 * * * * 1747 3423 * * * 29 0 * * * * * * 4622 0 0 P 30 5032 * * * 4642 * 3190 * 5294 * * 4098 1647 4794 1518 * 4996 * * * 30 120 4540 4774 0 * * * 4622 1000 0 L 31 * * * * 3565 * * 4582 * 251 * * * * * * * 4913 * * 31 58 * 4667 * * * 0 4330 0 1000 S 32 4918 * 4607 * * * * 4618 4140 * * 5175 * * * 563 3525 4764 * * 32 0 * * * * * 0 4151 0 1456 R 33 * * 3416 4110 * * * * 900 * * * * * 2842 3154 4040 * * * 33 57 4680 * 2322 322 825 1199 4247 1000 1456 E 34 * * 1689 1111 * * 4693 * 5020 * * 4992 * 4771 * 4629 * * 4350 * 34 0 * * * * * 0 4381 0 1000 L 35 3960 * 4761 3495 * * * * * 460 4277 * * * * * * 4983 * * 35 0 * * * * * 0 4381 0 1000 R 36 4158 * * * * * * * 2854 * * * 3749 3169 753 5216 * * * * 36 0 * * * * * 0 4427 0 1000 E 37 3729 * 3866 3062 * * 5133 * 1662 4126 * * 4655 3917 4726 3326 3455 * * * 37 0 * * * * * 0 4427 0 1000 K 38 4767 * * 2125 * * * * 943 3749 * * * 4180 * * * 4835 * 4341 38 0 * * * * * 0 4427 0 1000 Y 39 4655 4439 * * * * 3245 * 5133 4657 * 3290 * 3192 * * * * * 919 39 95 * 3971 * * * 0 4427 0 1000 K 40 * * 5262 * 3751 1360 * * 1884 * 4792 2927 * * * 3802 * * * * 40 159 3699 5205 1409 682 1520 618 4426 1517 1660 V 41 * * * * 3476 * * 1172 2765 * 5340 * 4727 3756 * * 5419 2649 * * 41 77 4261 * 1591 582 1317 740 4630 1682 1769 R 42 * * * 3828 * * * 5005 1702 * 5011 4877 5455 * 991 * * * * * 42 0 * * * * * 0 4692 0 1393 N 43 2389 * 5367 4559 * * 4403 * 3815 * * 5776 * * 2384 2261 2436 * * 5583 43 0 * * * * 0 * 4726 0 1393 L 44 5857 * * * 3173 * * 2578 * 2165 3254 * * * * * 3968 2639 2877 5961 44 0 * * * * * * 4785 0 0 P 45 * * * 5816 * 6060 6414 4564 2801 * * 3805 1903 5536 1929 4137 3477 * * * 45 24 5930 * 2585 263 * * 4749 1000 0 V 46 * * * * 4772 * * 656 * 3614 * * * * * * * 2018 * * 46 0 * * * * * * 4704 0 0 R 47 4315 6324 * * 4694 * 5358 5812 1651 5496 * 4944 * 5997 1606 6044 5790 3505 * 5816 47 0 * * * * * * 4732 0 0 V 48 4412 * * 4620 * * * 6637 1142 * * * 4769 6009 2341 6211 3511 3345 * * 48 0 * * * * * * 4727 0 0 G 49 * * 2833 4548 * 510 * * * * * 3123 * * * * * * * * 49 0 * * * * * * 4728 0 0 D 50 5812 * 118 5793 * * * * * 6328 * * * 6003 * * * * * 6071 50 0 * * * * * * 4728 0 0 K 51 5512 * * 2692 * * * 4047 2831 3234 4865 5818 * 4603 3392 4433 1997 5023 * * 51 0 * * * * * * 4728 0 0 V 52 5512 * * * * * * 3537 * * * * * * * * * 165 * * 52 0 * * * * * * 4728 0 0 R 53 5775 5240 * 2831 * * * 4248 2050 3948 4267 * * 2381 4266 6433 6442 3116 * 5542 53 0 * * * * * * 4728 0 0 I 54 * * * * * * * 1486 * 5199 * * * * * * * 700 * * 54 0 * * * * * * 4728 0 0 M 55 * 4688 * 5512 4979 * 6276 1415 5151 2014 3643 * * * 6527 * 4994 3038 * * 55 0 * * * * * * 4728 0 0 R 56 2224 6000 * * * 6234 6032 5707 4001 * * * * 5039 2243 1908 3185 4909 * 6829 56 0 * * * * * * 4728 0 0 G 57 * * * * * 31 * * * * * * * * 5536 * * * * * 57 0 * * * * * * 4728 0 0 D 58 3483 * 3163 3754 * 6342 5310 * 1872 5846 * 4123 3869 6032 3152 2994 5830 * * * 58 22 6023 * 2304 326 * * 4728 1574 0 Y 59 6162 * 1209 3752 2595 6519 3406 * 5450 * 5690 4393 * 5471 5751 * * * * 3689 59 75 4308 * 3386 145 * * 4728 2124 0 K 60 3685 * 6234 5439 * * 6494 6817 613 * * * * 4758 3340 6690 6000 5512 * 5096 60 0 * * * * * * 4728 0 0 G 61 * * 4202 * 6580 296 * * 5165 * * 4931 * * 6032 * 5381 5600 * * 61 33 6580 6342 3322 152 * * 4728 1000 0 H 62 4980 * 6150 3635 6090 * 5577 4659 964 * * 6659 * 4685 3553 6697 3955 3685 * * 62 22 * 6023 * * 0 * 4724 0 1000 E 63 * * 5425 2210 * 6625 * 2837 4308 * * * * 2759 3572 4075 2407 3639 * * 63 0 * * * * 0 * 4702 0 1000 G 64 4991 * * * * 208 * * * * * 6075 6160 * * 4724 4799 * * * 64 20 6160 * 0 * * * 4728 1000 0 K 65 6091 * * 3082 * * * 4403 1026 5082 * 6464 6358 5467 4246 * 2964 3786 * * 65 14 6708 * 3807 107 * * 4728 1000 0 V 66 * * * * * * * 2398 * * * * * * * * * 304 * * 66 0 * * * * * * 4728 0 0 V 67 4901 * * 5574 * 6330 * 2842 4244 1686 5593 * * * 4535 3652 2683 2932 * * 67 0 * * * * * * 4728 0 0 E 68 3062 * 4935 2713 6662 4639 5380 * 2089 * 6519 5264 * 3068 2802 3712 6622 * * * 68 12 * 6876 * * * * 4728 0 0 V 69 6176 5844 * * * * * 2305 * 4207 * * * * 6762 6620 5106 591 * * 69 18 6346 * 1000 1000 0 * 4728 1000 1000 D 70 6000 * 1813 * 3048 * * 2881 4868 2987 7372 3324 * 5846 5241 5050 6358 4630 * 4314 70 8 * 7481 * * * * 4728 0 0 L 71 4313 5823 * 5834 6687 * 4573 5510 3575 3794 * 6522 2173 6328 1978 5509 3565 4580 * 4732 71 0 * * * * 0 * 4733 0 1000 K 72 5202 * 3352 2267 * 4944 6650 * 1605 5595 6125 5719 6328 4833 3457 3663 6490 * * 6219 72 0 * * * * * * 4728 0 0 R 73 5265 * 4207 4186 * 4851 6677 5821 1861 6288 * 4022 * 4196 2942 3062 2915 5955 * * 73 0 * * * * * * 4812 0 0 Y 74 5481 * 4458 3641 4724 2647 6814 * 5059 6450 4310 1864 6325 3664 5867 3680 * * 6587 3608 74 0 * * * * * * 4812 0 0 R 75 4795 * 6584 4212 5411 6099 6561 * 2045 4505 5765 7088 * 4549 2061 3593 3259 4819 4889 * 75 0 * * * * * * 4812 0 0 I 76 3192 * * * * * * 2220 * 3127 * * * * * * * 833 * * 76 0 * * * * * * 4812 0 0 Y 77 4289 6319 * * 4222 * 5129 1926 4037 3272 * 6152 * 5294 6056 4757 3178 3391 * 2953 77 0 * * * * * * 4812 0 0 V 78 * 4987 * * * * * 2207 * 5991 * * * * * * * 442 * * 78 10 * 7159 * * * * 4812 0 0 E 79 5091 * 2369 1055 * * * * 2578 * * * * 4290 4751 6119 6632 5993 * * 79 0 * * * * * 0 4727 0 1000 G 80 6728 * 3430 * * 675 6624 * 3826 * * 3061 * * 4976 5649 5688 * * * 80 13 6748 * 1000 1000 * 0 4727 1000 1000 A 81 5067 3336 * * 5685 * * 2283 * 2302 6555 * * * 6334 * * 1250 * * 81 35 5393 * 2883 210 * 0 4729 1821 1000 T 82 5980 * * * 5131 5584 * 6747 3808 6263 5884 809 * 6110 6663 4827 2475 6187 * * 82 17 6399 * 1000 1000 0 * 4721 1000 1000 L 83 6975 6200 * 4667 * 6338 5879 2814 3524 3026 2345 * * 6226 2641 * 4868 2803 * 6658 83 16 6547 * 3170 170 * * 4817 1000 0 R 84 3619 * 6262 2882 * * * 3548 2236 * 5211 5839 * 4377 3399 4612 4617 2300 * * 84 39 5224 * 3747 112 * * 4725 1524 0 K 85 4960 * * * 5806 * 5478 4548 757 * * 3906 * * 4330 6213 2616 * * * 85 26 5793 * 2415 300 * * 4788 1577 0 T 86 2802 * * 5893 5698 5315 * 3527 1726 5779 * 5794 5389 * 2572 3196 4674 5072 * * 86 28 5704 * 2000 415 * * 4823 1000 0 N 87 4012 * 2783 5139 6192 4914 1467 * 3470 * 6249 2716 5385 5391 * * 5250 * * 5260 87 24 5899 * 1000 1000 * * 4859 1000 0 G 88 5064 * * 6319 5385 1298 * 4001 3659 5595 5011 * * 3464 5343 * 4822 2728 4964 * 88 0 * * * * * * 4859 0 0 T 89 6046 * 4991 3887 * 3795 * * 1129 * * 4453 6337 4060 3352 5737 3202 * * 6249 89 260 2601 * 3397 144 * * 4859 3026 0 E 90 4040 * 5359 2572 5737 * * * 3747 6113 6242 3506 1933 5271 6683 4662 2381 6828 * * 90 206 2910 * 3450 138 * * 4859 2644 0 V 91 4848 * * 4343 3766 * * 2964 4489 6100 4386 4589 * 5954 4748 5692 2889 1592 * 5240 91 232 2748 * 3305 154 * * 4859 3126 0 F 92 5550 * 4323 1176 3485 6238 * * * 5759 * 5574 2125 5364 5737 4806 6589 * * 5281 92 49 4894 * 3490 134 * * 4859 1992 0 Y 93 1893 * * * 3984 4215 * 3026 4686 4285 3779 * 5954 * 4426 4610 6812 2488 * 4753 93 64 4535 * 2502 280 * * 4814 2045 0 P 94 4970 * * 6207 4090 4237 * * 4444 5942 * 6057 515 * 6376 5219 6097 * * 6370 94 29 5660 * 1000 1000 * * 4814 1000 0 I 95 * * * * 6379 * * 479 * 2972 4607 * * * * * * 3289 * * 95 0 * * * * * * 4814 0 0 H 96 6084 * 3187 * * * 638 * 4659 * * 4229 6076 * 4040 4469 * * * 5710 96 0 * * * * * * 4796 0 0 P 97 2645 5783 * * 6197 * 4574 2243 * 4648 6426 * 1990 * 5228 4172 6025 3637 * 3757 97 0 * * * * * * 4796 0 0 S 98 6284 4951 5250 * 6133 * * * * * * * * * * 155 5940 * * * 98 0 * * * * * * 4796 0 0 N 99 * * 5250 * * * * * 2540 * * 434 * 5176 * 6084 5696 * * * 99 0 * * * * * * 4796 0 0 V 100 * 5889 * * 6133 * * 4093 * 1918 * * * * * * * 631 * * 100 0 * * * * * * 4796 0 0 M 101 2795 * * 6372 * * * 4007 4356 3520 1956 5187 * 3861 3952 6104 4686 2673 * 5896 101 0 * * * * * * 4745 0 0 I 102 5831 * * * * * * 1415 * 1361 * * 6289 6193 * * * 2383 * * 102 0 * * * * * * 4733 0 0 I 103 5863 * * * 5202 * * 2386 5590 4208 * * * 5974 * * 1491 1737 * 5807 103 56 * 4705 * * * * 4735 0 0 E 104 4252 4691 1671 3094 * 4522 * * 1542 * * 4274 * * * 4680 * * * * 104 36 * 5344 * * 0 * 4657 0 1000 L 105 4600 * * * 4120 * * 5074 4944 1027 * * 2427 5042 * 4032 5069 4603 * * 105 39 5229 * 1000 1000 0 * 4716 1000 1000 N 106 2396 * 3578 * 3671 * 4396 5095 2385 * * 2287 * 5308 * 5494 * 3918 * 4033 106 0 * * * * * * 4674 0 0 L 107 4483 4347 3169 4266 5124 * * 3808 5386 1488 3447 * * * * * 2549 * * * 107 245 * 2681 * * * * 4674 0 0 E 108 4849 * 2085 3234 * 2372 * * 4989 * * 2816 * * * 2123 5209 * * * 108 0 * * * * 0 * 4487 0 2600 D 109 * * 1419 4506 * * * 4367 2139 5027 * 2696 * * 3982 4102 * * * * 109 0 * * * * * * 4674 0 0 E 110 4030 * 5713 3636 * 3582 * * 1772 * * 5583 1356 5280 * 5283 * * * * 110 89 * 4069 * * * * 4674 0 0 K 111 5083 * 2111 * * 5540 * * 4896 3379 5193 5576 * * 2659 4393 1954 5348 4297 * 111 0 * * * * 0 * 4511 0 1553 R 112 * * 4870 * * * * * 4969 * * * * * 99 * * * * * 112 70 5324 5476 0 * * * 4588 1000 0 K 113 5007 * * 4063 5081 * * 4114 1277 * 4881 * * * 4955 * 5093 2006 * 3951 113 0 * * * * * 0 4477 0 1000 K 114 2199 * 3974 2755 * 3751 * * 2229 * * 2864 * * 2779 * * * * * 114 68 4438 * 0 * * 0 4477 1000 1000 I 115 3612 * * * 4631 * * 2358 2285 2104 * * * 4484 2837 5118 * * * 4982 115 0 * * * * 0 * 4434 0 1000 I 116 4092 * * 4411 * * * 1510 * 975 * * * * * * 4860 * * * 116 0 * * * * * * 4159 0 0 E 117 4683 * 4812 1061 * 3127 * * 3087 * 4613 4859 4047 4740 4613 * * * * * 117 67 4468 * 0 * * * 4098 1000 0 R 118 3271 * * 2117 * 4466 * * 2568 * * * * * 1146 * * * * * 118 0 * * * * * * 4050 0 0 R 119 * * * 4307 * * * 4184 685 * * * * * 2132 4502 * * * * 119 0 * * * * * * 3999 0 0 A 120 1340 * 3579 * * 3340 * * 2967 3074 * 4004 * * * 3136 * * * * 120 0 * * * * * * 3828 0 0 G 121 * * * * * 0 * * * * * * * * * * * * * * 121 0 * * 0 * * * 2861 0 0 //