HHsearch 1.5 NAME c3j20S_ FAM FILE c3j20S_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j20S_.a3m DATE Thu Jan 10 00:48:16 2013 LENG 67 match states, 67 columns in multiple alignment FILT 43 out of 47 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.6 EVD 0.4487 1.4906 SEQ >ss_dssp CCCCCCHHHHHHHHHHHHHSGGGCCSCHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHHHTCCC >sa_dssp EEEECEEEBCDBADDBBEEDCEDBCEDDEEACECADECDEDEDEECCCDBACBACEABECDEEEECE >ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC >ss_conf 9753278899999999998311415787889999999830024024579999999999999752689 >Consensus MGxIrxkxiKrxaxxlxexyxxxxtxDFxxNKxxvxextxvxSKklRNkIAGYvTxlxkxxxxgxvx >c3j20S_ MGKIRQGFIKRVARELVNKYPNEFTTDFEHNKKKVQELTNVTSKKIRNRIAGYVTKLVRMKMEGKIL >UniRef50_Q4Q806(1-66:143) 40S ribosomal protein S17, putative n=3 Tax=Leishmania RepID=Q4Q806_LEIMA E=2e-14 s/c=1.22 id=39% cov=100% MGKIRTKTVKRASRQVVEKYYSKLNFDFYQNKRVIMDVTIAESKKLKNKIAGYTTHIMKRLARGPV- >UniRef50_B7XH88(1-66:125) SSU ribosomal protein S17E n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XH88_ENTBH E=5e-13 s/c=1.15 id=37% cov=100% MGKVRGRAIKIASRQIIEGYFNRINNDFENNLAVVKDVTITQNKKTRNVLAGFVTHLYKRIQKGEV- >UniRef50_Q64BW7(1-66:76) Ribosomal protein S17E n=5 Tax=Archaea RepID=Q64BW7_9ARCH E=5e-12 s/c=1.09 id=43% cov=100% MGTVKPTYVKKLAKQLLKEV-AECTDDFELNKKLVDKYTNVESKDVRNRIAGYITHKKKGKVAEPEL >UniRef50_A0RTT2(55-109:174) Ribosomal protein S17E n=1 Tax=Cenarchaeum symbiosum RepID=A0RTT2_CENSY E=7e-07 s/c=1.00 id=36% cov=84% --------IKKHTEELLKNHKSEFGLSFEENKKTLERLSTIRYKILKNEIAGYITNQNKKEAE---- >UniRef50_UPI00015531AB(18-80:128) PREDICTED: similar to OTTHUMP00000016594 n=2 Tax=Murinae RepID=UPI00015531AB E=9e-06 s/c=0.81 id=27% cov=96% MGYICIKTGKKAAWVITEKNYTGLSNDLHNKKDLCKEIIIFPSKKLY-KIAGFVMRLMKQIQRN--- >UniRef50_O26894(1-62:62) 30S ribosomal protein S17e n=6 Tax=Euryarchaeota RepID=RS17E_METTH E=3e-14 s/c=1.29 id=44% cov=94% MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITRIISQQK----- >UniRef50_Q648S6(10-76:76) Putative uncharacterized protein n=1 Tax=uncultured archaeon GZfos37B2 RepID=Q648S6_9ARCH E=1e-12 s/c=1.11 id=46% cov=101% MGNIRPTYIKKIAKELIETRGYAFGTDFEANKVQVAKHTDITSKTIRNRVAGYIVRRNVIAKREKIL >UniRef50_C3MZH2(1-65:79) 30S ribosomal protein S17e n=12 Tax=Sulfolobaceae RepID=RS17E_SULIA E=2e-09 s/c=0.98 id=42% cov=96% MGNIYTKDIKRIVKEIYNQYKDEIKDDYNTNKQIVVRYVDVKSKKVRNRIAGYLTRYYKIMKE---- >UniRef50_D2EGN2(1-60:72) 30S ribosomal protein S17e n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGN2_9EURY E=3e-09 s/c=1.05 id=39% cov=91% MGRIRGKEIRNATIEVLKTYKGLFTDDFENNKEALSGIITAQ-KRTRNKIAGFITKLAKSK------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 3459 0 0 G 2 * * * * * 0 * * * * * * * * * * * * * * 2 50 * 4871 * * * * 3496 0 0 K 3 * 3522 * * * * * * 2294 5158 * 1871 * * 2303 3658 4024 * * 3958 3 0 * * * * 0 * 3498 0 1000 I 4 * * * * * * * 772 * * * * * * * 4593 * 1423 * * 4 0 * * * * * * 3512 0 0 R 5 * 3925 * * * * * * 1991 * * * * * 758 4593 * * * 4326 5 0 * * * * * * 3512 0 0 Q 6 * * * * * 3610 * 2965 * * * 3519 2211 2382 * * 1761 * * * 6 0 * * * * * * 3512 0 0 G 7 4090 * * * * 4805 * * 975 * * 5272 * 5080 4418 3041 2531 * * * 7 43 * 5080 * * * * 3512 0 0 F 8 4397 * 3446 4633 2899 * * 3963 * 5599 * 4501 * * * * 2037 3968 * 2000 8 0 * * * * * 0 3424 0 1000 I 9 * * * * * 3929 * 928 * * * * * * * 4627 * 1441 * * 9 0 * * * * 0 * 3649 0 1000 K 10 * * * * * * * 5058 134 * * * * * 4087 * * * * * 10 0 * * * * * * 3660 0 0 R 11 * * * * * * * 4503 1552 * * 3637 * 5506 1256 3417 * * * * 11 0 * * * * * * 3713 0 0 V 12 1497 * * * 5131 * 5006 2299 * 3305 5346 * * * * 4424 2480 5001 * * 12 0 * * * * * * 3713 0 0 A 13 893 * * * * 3447 * * * * * * * * * 2322 2993 4494 * * 13 0 * * * * * * 3713 0 0 R 14 * * 4275 4366 4704 * * 4211 1890 4873 4693 * * 4561 1812 * 4711 * 3710 5433 14 0 * * * * * * 3713 0 0 E 15 4401 * * 1466 4707 5739 * 5949 3849 5506 * * * 2427 * 5111 4646 2812 * 5111 15 0 * * * * * * 3713 0 0 L 16 * * * * 4630 * * 1624 * 987 5571 * * * * * * 3188 * * 16 0 * * * * * * 3694 0 0 V 17 4733 * * * 3288 * * 1648 * 1515 * * * * * * 3398 4202 * 4578 17 0 * * * * * * 3694 0 0 N 18 * * 3607 703 * * * 5132 2960 * * 4166 * 5691 4526 5148 * * * * 18 0 * * * * * * 3694 0 0 K 19 * * * 3716 * 4681 * * 1465 * 5728 3919 * 2688 3156 * 2553 * * * 19 0 * * * * * * 3703 0 0 Y 20 * * * * 5272 * 2443 * * * * 4329 * * 4999 * * 5450 * 543 20 33 * 5450 * * * * 3703 0 0 P 21 * * * 5156 3033 4164 4918 * 2719 * * * 1893 * 4353 * * * * 1782 21 0 * * * * 0 * 3689 0 1000 N 22 5450 * 2147 5585 * 3316 * * 4302 * 4659 3302 5328 4116 * 2702 2549 * * 4999 22 0 * * * * * * 3703 0 0 E 23 3916 5976 * 2540 * 4329 5166 4976 2664 3799 * * 4674 6123 2105 4240 * 3881 * * 23 0 * * * * * * 3703 0 0 F 24 * 5450 * * 1167 * * 3637 * 1457 4857 * * * * * * * 4249 * 24 0 * * * * * * 3703 0 0 T 25 * * 4761 * * 1963 * * 4595 * * 3048 * * * 4329 1016 * * * 25 0 * * * * * * 3703 0 0 T 26 * * 2984 4225 5489 4518 * 5166 2879 3654 * 2529 * * 3565 3223 2775 * * * 26 0 * * * * * * 3703 0 0 D 27 * * 270 * * * 5328 * * * * 4011 * * * 4414 4761 * * * 27 0 * * * * * * 3703 0 0 F 28 * * * * 138 * * * * 4329 * * * * * * * * * 4595 28 0 * * * * * * 3703 0 0 E 29 5419 4674 3138 1191 * * 2158 * * * * 4595 * 5166 * * 5530 * * 3820 29 0 * * * * * * 3703 0 0 H 30 4240 * 4436 3077 5399 * 3021 * 4976 5450 5187 3120 * 3942 * 4674 1674 5585 * * 30 0 * * * * * * 3703 0 0 N 31 * * 4945 * * * * * 4329 * * 124 * * * * * * * * 31 0 * * * * * * 3703 0 0 K 32 * * * * * * * * 114 3720 * * * * * * * * * * 32 0 * * * * * * 3703 0 0 K 33 3394 * 4329 3495 5166 * 3865 6198 1583 4761 * * * 4595 2452 * * 4026 * * 33 0 * * * * * * 3703 0 0 K 34 3630 * * * 5166 * * 3085 3467 2276 6342 * * 4999 5054 4837 4984 1572 * * 34 0 * * * * * * 3703 0 0 V 35 * 1914 * * * * * 5489 * 2714 * * * * * * * 837 * * 35 0 * * * * * * 3703 0 0 Q 36 3590 * 4301 1367 * 6123 * * 3494 * 4297 5419 * 3118 * 3184 4857 4595 * * 36 0 * * * * * * 3703 0 0 E 37 4078 * 2600 1094 * 5250 * * 3100 * * * * 3824 3776 * 5588 * * * 37 0 * * * * * * 3703 0 0 L 38 * * * * 5603 * 4999 1932 * 1875 * * * * * * 4674 2171 * 2714 38 0 * * * * * * 3703 0 0 T 39 2018 * * * * 5399 * 3202 * 4976 * * * * * 3058 1226 4595 * * 39 0 * * * * * * 3703 0 0 N 40 * 5272 3783 4382 * * * 1527 4976 5166 * 2646 * 4771 * 4272 2626 4761 * * 40 0 * * * * * * 3703 0 0 V 41 3952 * * * 4329 * * 1485 4976 5763 * * * * * 5328 4245 1320 * * 41 0 * * * * * * 3703 0 0 T 42 * * * 2577 * 5272 * * 3718 4674 * 5728 2023 3014 3344 4067 3148 4976 * * 42 38 * 5250 * * * * 3703 0 0 S 43 5041 * * * * * * * * * * 3834 * * * 377 3366 * * 4941 43 0 * * * * 0 * 3677 0 1000 K 44 * * * 4789 * * * * 53 * * * * * * * * * * * 44 0 * * * * * * 3703 0 0 K 45 5187 * 5450 5530 * 4099 4420 4984 1184 * 5453 4789 6229 * 2947 5166 3525 4857 * * 45 0 * * * * * * 3703 0 0 I 46 * * * * 4976 * * 2680 * 873 6197 * * * * * 3937 2418 * * 46 0 * * * * * * 3703 0 0 R 47 * 4182 * * * * * * 2941 * * * * 4945 449 * * * * 4329 47 74 * 4329 * * * * 3703 0 0 N 48 * * * * * * * * * * * 55 * * * 4740 * * * * 48 0 * * * * 0 * 3634 0 1000 R 49 * * * 3445 * 5328 * * 1324 * 5272 * * 3957 1496 * * 4681 * * 49 0 * * * * * * 3703 0 0 I 50 * * * * * * * 290 * 4681 * * * * * * * 2804 * * 50 0 * * * * * * 3703 0 0 A 51 113 * * * * * * * * * * * * * * * 4789 4674 * * 51 0 * * * * * * 3703 0 0 G 52 * * * * * 53 * * * * * * * * * 4789 * * * * 52 0 * * * * * * 3703 0 0 Y 53 * * * * 2529 * * * * * * * * * * * * * * 274 53 0 * * * * * * 3703 0 0 V 54 5399 * * * * * * 1489 * 3184 * * * * * 4857 4705 1194 * * 54 0 * * * * * * 3703 0 0 T 55 5328 * * * * * * * * * 3491 * * * * * 281 3987 * * 55 28 5720 * 0 * * * 3703 1000 0 K 56 * * * * * * 1253 * 4092 * * 4185 * * 1218 4761 * * * * 56 0 * * * * * * 3703 0 0 L 57 * * * * * * * 3534 2460 773 * * * 4984 4999 * * 5720 * 3949 57 0 * * * * * * 3703 0 0 V 58 4401 * * * * * * 3442 4421 4247 1777 3906 * 4993 * * 4137 2352 * 3074 58 0 * * * * * * 3763 0 0 R 59 4437 * * 5006 * 4947 * * 607 * * 5426 * * 2748 5392 * 4725 * * 59 0 * * * * * * 3837 0 0 M 60 * * * * 4826 5104 * 3299 3224 4983 3812 * * 2573 1420 4077 * 5430 * * 60 0 * * * * * * 3812 0 0 K 61 4620 * * 3024 5286 * * 1513 2077 3694 3913 * * 5306 4201 * * * * * 61 0 * * * * * * 3800 0 0 M 62 2876 * * 2850 * 4779 * 4987 2684 4067 5758 * * 1512 5834 * * 4176 * * 62 0 * * * * * * 3777 0 0 E 63 4682 * * 2458 * * 5462 * 2467 * * * * 3818 1406 * 3361 5063 * * 63 0 * * * * * * 3772 0 0 G 64 * * 4170 3030 * 833 * * 4299 * * 3187 * * 3897 4926 * * * * 64 0 * * * * * * 3376 0 0 K 65 * * * 3796 * * * * 1703 * * * 1095 3176 * 4569 * * * * 65 0 * * * * * * 3236 0 0 I 66 * * * 3817 * * * 2090 * 3882 4763 * * * * * * 763 * * 66 0 * * * * * * 3161 0 0 L 67 * * * * * * * * * 0 * * * * * * * * * * 67 0 * * 0 * * * 1837 0 0 //