HHsearch 1.5 NAME c3j20R_ FAM FILE c3j20R_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3j20R_.a3m DATE Wed Jan 9 22:35:42 2013 LENG 113 match states, 113 columns in multiple alignment FILT 106 out of 158 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.6 EVD 0.3903 -1.8321 SEQ >ss_dssp CCCCCCTTCCCCSSCCCCSSSTTSSSCCCCSCEEEEEEEECCSTTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTSEEEEEECSCSSSSEEE EEEEECCCCCCCC >sa_dssp EEEEBCDECECBEEBDBCEDACBCDEAECEEEDCEBCBDCDEDEECBBBCCDCEEDCEEEEEECEDDDECDABBADBDEADDBADBCABCBEEBDEDBDB AAACCEECEEEEE >ss_pred CCEEEECCCCCCHHHCCCCCCCEEEEEEEEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEECCEEEEEEECCCCCEECCCCEEEEECCCCCCCCEEE EEEEEECCCCCCC >ss_conf 9135530653754540677787042236822999999996078985999997798726310265121459998788756037988999505646640459 9998340665569 >Consensus xxxxiglxxxxpxxxxxDxxcpxxgxxxvrgrxlxGxVvsxkmxKTvxVxvxrxxxhpkyxKxxxrxkkyxaHDxxnxxxkvGDxVxIxexrPlSKtKxx xVxxixxxaxxxx >c3j20R_ MMRDIGLRVQPPAEKCDDPKCPWHGNLKIHGRVFEGIVVSDKPRKTVTVERQYYFYLNKYERYELRRSKIHAHNPPCINAKVGDKVLIAETRPLSKTKHF VVVAVLERAEERR >UniRef50_Q3LW88(7-115:119) Ribosomal protein S11 n=2 Tax=Chlorarachniophyceae RepID=Q3LW88_BIGNA E=9e-27 s/c=1.11 id=35% cov=97% MINKFKIKIPLRNKDKIDKKCPFYGKINLRGRILRGKVRKIKMKSTVIIRIDYLKFLKKYNRFVKRHKNIPAHLSNLLTCKVGDIVIIAECRPISKTVRF NVIKVFSKV---- >UniRef50_UPI00006CFC97(24-109:205) ribosomal protein S17 containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CFC97 E=9e-07 s/c=0.63 id=32% cov=71% ------------------------------GRELFGTVIQhGKMDKTVTVKVDYRYWYPKTKEFKSKTSKYQVHDSENFCVT-GDKVVIKSMLPISTMKH YyvrNIVKPFPRDT--- >UniRef50_B7P646(9-86:110) Carrier protein, putative n=1 Tax=Ixodes scapularis RepID=B7P646_IXOSC E=0.0005 s/c=0.58 id=21% cov=62% --------------------------------ILMGKCISSAMKKSVRVVVPRFVLNTYLMAHYKERTEYDVFD-ANEECKPGDWVIIRELpERLSLKIA HKV----------- >UniRef50_UPI00004EE5EF(36-152:157) PREDICTED: similar to ribosomal protein S11 n=1 Tax=Bos taurus RepID=UPI00004EE5EF E=4e-23 s/c=0.92 id=28% cov=100% FHKNISLGFKTPKEAIEgnyiDKKCRFTGNGSIQGQILSSDQNEDGEGHSLICP-DYLRYIRKYNRFERGHRNMSVHLSPCFrDIQIGDIFTVGTCWPRS KTVPFHVRKVTKAADTKR >UniRef50_A9SK20(8-87:116) Predicted protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9SK20_PHYPA E=6e-16 s/c=1.07 id=32% cov=71% ------------------------GPLRVEAmKKIQGRVICASNDKTIAVEVTRIAPHSKYLKRIKSAKKYHAHDPEN-ECNVGDIVTLEKCKPISKSKT FIVVE--------- >UniRef50_Q5KK21(8-87:157) 30S ribosomal protein S17, putative n=2 Tax=Filobasidiella neoformans RepID=Q5KK21_CRYNE E=3e-12 s/c=0.91 id=32% cov=71% --------------------------------VFKGIVTKVGaMRKTATVTVERIFEHPKILKEMKRHKKFLVHDEGEL-ARLGDKVSIIHGARTSRHKS FRLQSILSRNTQK- >UniRef50_Q4FW85(86-172:312) 30S Ribosomal protein S17-like protein n=6 Tax=Trypanosomatidae RepID=Q4FW85_LEIMA E=1e-14 s/c=0.93 id=33% cov=69% -----------------------------------GYVVGTSMLKTAVVAANHMVYYPKFNQRVSRTSRFFAHDED-LACVEGDLVHIKQSRKISKYKHY YVFSILEPNIEGR >UniRef50_D1ZTJ0(17-96:165) Whole genome shotgun sequence assembly, scaffold_108 n=5 Tax=Sordariomycetes RepID=D1ZTJ0_SORMA E=1e-09 s/c=0.81 id=26% cov=61% ---------------------------------LHGVVVTSGlMDKTVKVRVGGQKFNRFLQKHFDDPKQYLVHDPNN-SLRTGDVVAIMPGFITSKSKR HVV----------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * 1352 * * 2960 * * 1060 * * * * * * * * * 1 0 * * * * * * 2752 0 0 M 2 * * * * * * 3361 3561 * * 2234 * * * * * 2737 1503 * 3284 2 0 * * * * * * 3032 0 0 R 3 * * * * * * * * 1032 * * 3717 * * 1201 * * * * * 3 0 * * * * * * 3235 0 0 D 4 * * 1737 2924 * * 4295 * 4043 * * 1285 * * * 4430 * * * * 4 0 * * * * * * 3830 0 0 I 5 * * * * 4076 * * 394 * 4317 * * * * * * * 2947 * * 5 0 * * * * * * 3861 0 0 G 6 * * * * * 472 * * 2685 * * * * * * 3019 * * * * 6 87 4101 * 1000 1000 * * 3861 1000 0 L 7 * * * * 4440 * * 1652 * 879 4517 * * * * * * 4376 * * 7 381 2108 * 0 * * * 3861 1935 0 R 8 * * 3282 * * 1313 4581 * 3113 * * 2828 * * 3393 5993 * * 3547 * 8 0 * * * * * * 3297 0 0 V 9 * * * * 2277 * * 1796 * 4566 * 3286 * * * * * 1639 * 4650 9 0 * * * * * * 3320 0 0 Q 10 * * * 2823 * * 4650 * 1234 3060 * * 3501 3425 * * 3439 * * * 10 0 * * * * * * 3320 0 0 P 11 4792 * * 3251 * 4356 * * * 2250 6045 * 1905 * * 4724 2375 3522 * * 11 0 * * * * * * 3320 0 0 P 12 * * * * * * 5215 * 3336 * * * 275 * 4386 * * * * * 12 0 * * * * * * 3382 0 0 A 13 2451 * * 2324 * 4402 * 4937 1585 * * 3559 * 3938 * * 4210 * * * 13 0 * * * * * * 3534 0 0 E 14 3850 * * 1458 * * * 4585 3589 * * * * * 3407 2373 3148 4584 * * 14 0 * * * * * * 3534 0 0 K 15 1713 * 3362 3303 * * * * 4873 * * * * 3040 * 3019 5278 2793 4402 * 15 19 6294 * 2000 415 * * 3534 1000 0 C 16 * 1034 4402 * 4585 * * 2174 4533 * * * * * * 3648 * 5278 * 4259 16 0 * * * * * * 3534 0 0 D 17 4584 * 2444 1901 * 4402 * 3357 * * * 2245 * * * 4648 3171 * * * 17 488 1802 * 1960 428 * * 3534 2620 0 D 18 * * 0 * * * * * * * * * * * * * * * * * 18 0 * * * * * * 3534 0 0 P 19 3648 * 3729 4402 * * * * 1057 * * * 1861 * * * 4584 * * * 19 0 * * * * * * 3534 0 0 K 20 3648 * * 4210 * * 4412 * 900 3858 * 2221 * * * * * * * * 20 0 * * * * * * 3534 0 0 C 21 3648 249 * * * * * * * * * * * * * 3667 * * * * 21 0 * * * * * * 3534 0 0 P 22 * * * * * * * * * * * 3738 265 * 3883 5331 * * * * 22 0 * * * * * * 3585 0 0 W 23 3734 * * * 986 * 4656 * * 3738 * * * * * * * * 1937 4504 23 112 3738 * 2000 415 * * 3585 1000 0 H 24 4096 * * * * * 906 5331 * * * * * * 3734 * 2166 * * 3553 24 0 * * * * * * 3585 0 0 G 25 * * * * * 160 * * * 3774 * * * * * * * 4958 * * 25 74 4319 * 1585 585 * * 3687 1000 0 N 26 4319 * 3738 4331 3819 * 2645 * 2933 * * 1736 4301 * * 3678 4859 * * * 26 0 * * * * * * 3687 0 0 L 27 * * * * * 3936 * 2682 * 954 * * * 3774 3819 * * 3075 * * 27 0 * * * * * * 3687 0 0 K 28 4297 * * * * * * * 2277 * * 3187 * * 2122 1444 * 4809 * * 28 0 * * * * * * 4174 0 0 I 29 * * 3843 * * * * 1603 * 3419 * * * * * * * 978 * * 29 0 * * * * * * 4217 0 0 H 30 * * * 4795 * * 4196 * 3929 * * * 4668 2821 658 * 5104 * * * 30 93 4994 4996 0 * * * 4094 1000 0 G 31 3003 * * * * 747 * * 4937 4317 * 4325 * 4850 3538 * * 5259 * * 31 48 4940 * 0 * * 0 4272 1000 1000 R 32 * * * * 5885 * * * 1832 * * 4789 * 2077 1382 6098 5959 6082 * * 32 0 * * * * * 0 4628 0 1000 V 33 * 5773 * 4146 4348 * * 1905 5370 2900 * * * 4093 * 4706 2569 2833 6590 4849 33 30 5602 * 0 * * 0 4761 1000 1000 F 34 * * * * 2450 * * 2905 6968 915 4498 * * * 6419 * * 4834 6343 4574 34 0 * * * * 0 * 4946 0 1000 E 35 5819 * 4708 2634 4447 * * 5083 3354 5879 4914 5766 5761 3298 4492 3958 2557 2811 * * 35 0 * * * * * * 4989 0 0 G 36 * * * * * 116 * * 5323 * * * * * * 4964 * 5638 * * 36 0 * * * * * * 5093 0 0 I 37 * * 4964 6570 * * 6700 2745 2605 4240 * * * 4943 3143 6323 2452 2230 * 5195 37 0 * * * * * * 5093 0 0 V 38 * 4848 * * * * * 5725 * 5323 7247 * * 4964 * * * 180 * * 38 0 * * * * * * 5093 0 0 V 39 4323 * * 4838 5326 * 6883 1819 * * * 5028 * * 6810 6076 2913 1330 * 6251 39 0 * * * * * * 5088 0 0 S 40 6547 5877 * 5028 * 3443 * * 3036 * * 6795 * 5801 4020 725 4877 * * * 40 26 5801 * 0 * * * 5088 1000 0 D 41 2689 6543 2202 * * 5801 5574 5769 4251 6296 5168 2936 * 6824 6034 3910 2785 3320 * * 41 126 3585 * 180 3090 * * 5088 2656 0 K 42 4149 * 6771 * 5520 3015 * * 937 5247 4960 6620 6538 6776 3807 3776 5405 * * 6629 42 96 3962 * 0 * * * 5088 2363 0 P 43 3448 6554 6880 5031 * 5117 5372 5896 * 4444 684 5844 4642 6544 5233 6952 5833 * * * 43 11 * 7008 * * * * 5107 0 0 R 44 4943 * 2079 3419 * 4621 5119 5876 3916 5539 5254 3286 4028 2828 5054 4868 3878 * * * 44 0 * * * * 0 * 5110 0 1000 K 45 * * 7362 5781 * 5702 4438 * 399 * 7048 4747 * 4801 4000 6818 * * * * 45 15 * 6638 * * * * 5107 0 0 T 46 4628 * * * * 6835 * 5321 * * 5499 5577 * * * 2361 569 6136 * * 46 0 * * * * 0 * 5106 0 1000 V 47 2663 5565 * * * 5786 * 1876 * 4358 * * * * 5447 * * 1124 * * 47 0 * * * * * * 5108 0 0 T 48 5506 * 5328 * * 6784 * 2913 2776 * 5441 6832 * * 3272 6947 2439 1567 * * 48 0 * * * * * * 5108 0 0 V 49 6961 4448 * * * * * 3607 * 4842 3896 * * * * * * 392 * * 49 8 * 7475 * * * * 5108 0 0 E 50 3254 6637 * 2410 * 6885 * 5786 3782 3536 4988 * 5025 3638 2384 4330 3821 4134 * * 50 45 * 5025 * * * 0 5048 0 1000 R 51 4897 6781 * 6756 * * 4268 3353 4936 * * * * 5938 3200 * 5621 740 * 5530 51 0 * * * * 904 1103 4940 0 1379 Q 52 3599 * 2453 1880 * 6373 * 5568 4477 * * 4073 4461 4798 5760 3843 3275 4928 * 5647 52 0 * * * * * 0 5048 0 1000 Y 53 5916 * 5593 6299 * 5573 4781 5317 4434 6798 6394 5349 * * 1139 5296 4056 6885 5098 2332 53 0 * * * * * 0 5048 0 1000 Y 54 6093 * 6800 4056 5391 * 6217 4896 4102 1856 5076 7052 5916 4277 2215 5802 4722 4655 6267 3615 54 0 * * * * 0 * 5048 0 1000 F 55 3725 * * 5125 4185 * 3204 4455 2461 6944 4610 * * 6639 4182 * 5943 1907 * 3211 55 0 * * * * * * 5108 0 0 Y 56 5821 * * 5346 3371 * 7047 6322 2584 3439 6947 7212 4080 6160 3511 * 4707 6747 2773 2235 56 0 * * * * * * 5108 0 0 L 57 * * 2824 * 5901 * 1062 3487 * 5410 5533 3371 * 5328 * 5048 * 4387 * 5095 57 0 * * * * * * 5108 0 0 N 58 5228 5328 * 6747 * * * 6463 2550 6483 * 3869 1109 5447 3806 6090 4337 4835 * 5631 58 22 6035 * 0 * * * 5108 1000 0 K 59 6299 * * * 5885 * 5070 4738 1065 2875 6416 * * * 3183 * 3990 4059 * 4502 59 0 * * * * * * 5108 0 0 Y 60 * * * * 3338 * * 3980 * 3543 * * * * * * 5020 3860 6915 635 60 0 * * * * * * 5048 0 0 E 61 7006 * 5041 4615 * 2430 3643 * 1828 3960 4938 3413 * 4532 3495 4871 5900 * * * 61 0 * * * * * * 5048 0 0 R 62 4883 * * 5810 * * * * 804 * * * * 4712 1806 5582 * 5039 * * 62 0 * * * * * * 5048 0 0 Y 63 5317 * * 4466 3044 * 5029 3260 4686 4773 5806 * 6941 5593 2816 * 3534 4919 * 1787 63 0 * * * * * * 5048 0 0 E 64 4750 * * 2877 2937 6247 * 2409 5282 5317 3729 6028 * 4943 * * * 2187 4764 3962 64 0 * * * * * * 5048 0 0 L 65 * * * 7125 * 4444 * 4436 2131 4948 5717 4071 4190 6481 1744 3965 3745 4534 * 6028 65 37 * 5317 * * * * 5048 0 0 R 66 5245 * 5536 4847 6279 4323 6863 6521 1930 6899 6745 * * 5441 1383 5399 4939 4163 * 4786 66 0 * * * * * 0 4966 0 1000 R 67 6853 * * * 6720 * 2919 5522 3251 * * 5648 5309 * 2092 2632 1978 6307 * 6020 67 0 * * * * * 0 4966 0 1000 S 68 6307 * * 5967 * * * 7176 1155 * 5451 6642 * 6020 3286 2646 2333 7327 * * 68 0 * * * * * 0 4966 0 1000 K 69 * * 5517 4628 * * 6818 5339 1067 * * 2990 * * 2773 5146 3416 5363 * 6867 69 0 * * * * * 0 4981 0 1000 I 70 * 6014 * * 2772 * 5338 2580 * 3859 4194 * * * * * * 4041 * 1115 70 0 * * * * * 0 4981 0 1000 H 71 4109 * 5707 * 4282 * 2504 5553 3453 2642 3107 5760 5137 4360 4863 3994 5067 5743 6764 4160 71 0 * * * * * 0 4981 0 1000 A 72 1038 6608 * * 6387 * * 4239 * * * * * * * 6243 5591 1373 * 5818 72 26 * 5816 * * * 0 4981 0 1000 H 73 * 6110 * * 5663 * 240 * * * * * * 6001 4417 5201 * * * 5093 73 0 * * * * 759 1290 4933 0 1602 N 74 6806 5158 474 * 6449 * * * * 3083 6243 6353 * * * 5601 6391 4162 * * 74 69 * 4430 * * * 0 4981 0 1000 P 75 6088 * 5959 1246 * 5745 6475 * 7313 * * * 1523 6335 * 2863 6190 * * * 75 58 * 4671 * * 339 2255 4919 0 2829 P 76 3984 * 3002 2570 5797 3980 5654 6917 3627 5122 6217 3215 2982 7832 4369 3731 4725 * * 6538 76 103 * 3863 * * 356 2194 4960 0 2591 C 77 * 2089 4139 5415 * 4779 5628 * * 4691 6158 1013 6321 5317 * 4951 6655 * * * 77 743 6823 1345 2322 322 419 1989 4940 1000 3016 I 78 4797 * * 3034 2669 * * 1811 5962 2819 4026 * * 5480 * 4177 6292 3734 6057 * 78 504 3519 2267 0 * 84 4150 4918 1944 4100 N 79 3821 5632 2887 1960 * 6643 * 5611 4098 * * 4867 5148 3664 5251 2294 4358 7021 * * 79 144 5230 3869 1000 1000 0 * 5011 1330 3493 A 80 2251 1625 * * 5188 * * 3769 * 3212 * * 5684 * * * 5742 2354 * 5426 80 20 * 6170 * * 256 2619 5122 0 2323 K 81 5024 * 5739 4824 * 4765 5314 * 1410 6258 * 2858 * 3378 3090 4424 4791 5068 * * 81 26 * 5798 * * 0 * 5043 0 1581 V 82 7178 6536 * 1998 * * * 2783 5493 3656 5417 * 3749 * * 5905 6367 1480 * * 82 0 * * * * 0 * 5040 0 1000 G 83 * * 5219 * * 56 * * * * * 6494 * * * * * * * * 83 0 * * * * * * 5068 0 0 D 84 * * 108 4747 * * 6458 * * * 6446 * * * * 6406 * * * * 84 0 * * * * * * 5068 0 0 K 85 6060 * * 6538 4864 * * 2298 2746 3574 4868 5926 * 6040 3864 5782 3221 2438 4794 5450 85 0 * * * * * * 5068 0 0 V 86 * * * * 5054 * * 2768 * 6166 * * * * * * * 305 * * 86 0 * * * * * * 5068 0 0 L 87 6338 * * 2616 * * 5240 3475 3615 2782 5283 * * 4826 2658 5906 2774 3497 6610 * 87 0 * * * * * * 5068 0 0 I 88 4490 4221 * * 3785 * * 670 * 3468 6044 * * * * * 5926 3664 * * 88 0 * * * * * * 5068 0 0 A 89 2895 * 6006 3087 * 2714 6481 3813 3518 * 3919 6942 * 4472 2979 3801 4574 4839 6008 * 89 0 * * * * * * 5064 0 0 E 90 4165 * * 832 * 6944 3801 * 4840 * * 6266 4277 4068 6657 3427 4623 * * * 90 0 * * * * * * 5066 0 0 T 91 * 1260 * * * 3763 4907 5863 * 4868 5801 5824 * * * 3108 2017 5812 * 7015 91 77 4778 6017 0 * * * 5066 1648 0 R 92 4113 * * 5262 * 6305 5516 6536 4775 5404 7000 * 4840 4314 641 * 7057 * 4547 5248 92 0 * * * * 0 * 5047 0 1000 P 93 * * * * * * 6465 * 3283 * * * 342 * 3367 * * * * * 93 0 * * * * * * 5066 0 0 L 94 6920 * * * 5008 * * 1791 5125 1223 4433 * * * 4460 6142 4233 4356 * 7216 94 0 * * * * * * 5066 0 0 S 95 5252 * * * * 5588 * * 5614 * * 5661 * * * 132 * * * * 95 0 * * * * * * 5066 0 0 K 96 3542 * * 6001 * 5588 * * 458 5734 * * * * 3146 * 5801 * * * 96 0 * * * * * * 5066 0 0 T 97 * * 5179 5694 6685 5146 3875 7649 3909 3964 5801 4443 * 6888 3165 3791 1173 * * 6417 97 30 5588 * 1585 585 * * 5066 1000 0 K 98 * * * * * * * 3224 585 * * * * * * 5661 6017 2388 * * 98 0 * * * * * * 5066 0 0 H 99 3764 * * * 6219 * 2857 * 4489 * * 5597 5045 * 1293 2325 4524 * * 5141 99 0 * * * * * * 5066 0 0 F 100 * 7029 * * 1210 * 2864 * * * * 5580 * * * 5411 * * 1703 3817 100 28 5714 * 1585 585 * * 5047 1000 0 V 101 4060 5851 * 4796 * * 4645 3567 4846 5778 5491 3365 * * 2786 4621 3800 1646 * 6250 101 0 * * * * * * 5031 0 0 V 102 5179 * * * 6815 * * 3065 * 2070 6346 * * * * * * 753 * * 102 0 * * * * * * 5015 0 0 V 103 4516 * 7180 4938 4728 * 5400 2580 4075 2719 6349 * * 6424 4868 4840 3922 1756 * 5524 103 0 * * * * * * 4801 0 0 A 104 6948 * 3874 1611 * 3692 6276 * 2136 * * * 4409 4383 3278 3859 6433 * * * 104 0 * * * * * * 4793 0 0 V 105 * * * * 5837 * * 1398 3230 4055 * * 5487 * 5913 * 5249 1430 * * 105 0 * * * * * * 4776 0 0 L 106 * 4959 6441 5046 4730 * * 2857 3291 1492 * 6809 6165 * 5825 5402 3931 2619 * * 106 0 * * * * * * 4683 0 0 E 107 4181 * * 1938 * 6325 6309 * 1864 * * 6751 3254 4881 3587 2832 6327 * * * 107 0 * * * * * * 4649 0 0 R 108 3221 * 3326 * * * * * 1425 * * 5764 5615 * 1792 5381 4265 5867 * * 108 0 * * * * * * 4532 0 0 A 109 1070 * 3686 5365 * * * * 5764 * * 4074 4551 5501 5374 2620 * 3436 * * 109 0 * * * * * * 4487 0 0 E 110 5055 * 3893 2593 * 3367 * 4360 * * * 3324 * * 3939 3482 1890 3902 * * 110 0 * * * * * * 4324 0 0 E 111 3594 * 4464 1239 * * * * 4978 * * * * 3368 2697 * 2597 * * * 111 0 * * * * * * 4169 0 0 R 112 3830 * * 3278 * 3301 * * 1698 * * * * * 1797 * * * 2954 * 112 0 * * * * * * 3716 0 0 R 113 * * * * * * * * 1277 * * * * 3057 1098 * * * * * 113 0 * * 0 * * * 3517 0 0 //